BAC Information

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BAC

Clone NameB6Ng01-170F07
Chromosome13 (Build37)
Map Location 41,467,244 - 41,608,487
singlet/doubletdoublet
Overlap geneNedd9
Upstream geneLOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659
Downstream geneEG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1, Edn1, Hn1-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170F07.bB6Ng01-170F07.g
ACCDH961071DH961072
length1,0441,212
definitionDH961071|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F07, 5' end.DH961072|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,607,439 - 41,608,487)(41,467,244 - 41,468,470)
sequence
gaattccactaatttgtgttaactcactgtcaagttcagcagaatcagga
tttatccatttccaccaatacacaaccttcctctgttatcctccaccaac
acaggactctgaactcttcaccacttgatgtcaaaatctgagagctgggc
cagaacctagagactgctcagcagttaatggttcttgccaccgaacctgc
tgcgctcagttccattcctggaacacacatgggggaagcagagaacactg
caagcaaattatcctttgactcccacacagtggcctgcgatgtatgcgca
cacacggagagactcacacactaaataaatgggagagaaaatctgaaatc
ttcattagtgttgctgcctagcaaacaatcacagtatacaacttgtttca
gtaaggtgggtgagtttttacctgattcaagcttaaagctcaatgctaga
ttcaattgattgtgccctctgacagctttatgagaatgaatgatttaggg
aggaagagagtttatgcattcagactgcctccagattttcctgaccttgg
aaacaagggatgtttggggatgtcaagatggttgagcaagtggagacatt
gccaagcctgatgaccggggcttgatccctgtaacccatgggggagaagg
ggggaaaaatcaactcctaaaagttgtcttcagaagttcacacatgcaca
tggtggccacgtgtacctcccccgcccagcaatagataaacataataaaa
caattgcaagctgtatatttaccaaggctattttaactcttatggtaaat
gagaggcccttggaaacacgaagaagcaccctgaggattcctgtttgaat
tagcttcccaatgttccatacagatactgtcagcaaagtattgttccgta
gagatactgttagcaaagtataggggagacgctcatgctttccttgaaaa
caaaacaaaatcaaacaaaaaaaacaaaaaaaccctgaaacttgcttttc
caggaataatacaatacaattatgttttgctatagatgggtgca
gaattcagagaccatttcacatggttcaactttattttcctttttttttt
cacatttaacaaagtgatccatctggaaagtggatgtttaaaaactttca
ctatgagaaatcacttcttttcagggaagataatatatttttttcctctc
tttgggtggggcaggggtggatatttagatacgtgttacacaaagctaca
ctgtggaccaaataataacatcaacaccaaaggataaaggcatacaccag
cccagacttccttcctatacactcagagcattgaggtaaatggaatgacc
gtcagaagatcttacaggtactgttggcatctgtggctcaggaagtcagc
gcagagcatggctcaggttgatgggacctcaaggctatttgcatgtccat
gctccaagacttgttccacagggacctacagttccagagagagaggcaaa
ggcagactccactcaggctccaggaatgaaatgtatttatctattttgtg
atgctagggactgaattctggcctttctgtatgctagacaactcaaccac
tgagccacaaccttagcctttcaataaagaaattttatacacacacacac
acacacacacacacacacacacacagacctacatatatatacacacacaa
acatataatatagacacataatatatattcacttgcatttataatatata
catatattgtatatgcacatataacacatacacatatataatatagacac
atatattcacttgcatttataatatacatacaagtatattatatatacac
atacacacacacaaactcacacatgtcgtaacacatattcattttcaggt
actttgaactttgggctttgcagaggctgagcagtgctctacctctgagc
tctgttccccagcagactgagcttctttttagttcttctagcgtaagttt
agccacatcacttagcacggctgtttgttaaccacctcagacactgcact
gaacagtcagggcttctgaagtacagtttggccaaagcctttctgaactt
gcaagggtcagctgaagaaagccattctttaaggtcacttgggcccaggt
gccccttccggttctgttttcgcggaagatggttttcacttcacacccca
gaaatcaaaagctgtccaggaaacatctccctagcctgctcagtcagtct
attaacaaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_41607439_41608487
seq2: B6Ng01-170F07.b_49_1092 (reverse)

seq1  TGCACCAATCTATAGCATATATAAATTGTATTGTGTATTTCCTGGAAAAG  50
      |||||| |||||||||| |    ||||||||||| |  ||||||||||||
seq2  TGCACCCATCTATAGCAAAACATAATTGTATTGTATTATTCCTGGAAAAG  50

seq1  CAAGTTTCAGGGTTTTTTTGTTTTTTTTTTTGTTTGTTTTTGTTTTTGTT  100
      ||||||||||||||||||||   ||||||||||||| |||||||||   |
seq2  CAAGTTTCAGGGTTTTTTTG---TTTTTTTTGTTTGATTTTGTTTT--GT  95

seq1  TTTTCAGGAAAGCATGTGCGTCTCCCCTATACTTTGCTAACAGTATCTCT  150
      |||  ||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCAAGGAAAGCATGAGCGTCTCCCCTATACTTTGCTAACAGTATCTCT  145

seq1  ACGGAACAATACTTTGCTGACAGTATCTGTATGGAACATTGGGAAGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAACAATACTTTGCTGACAGTATCTGTATGGAACATTGGGAAGCTAA  195

seq1  TTCAAACAGGAATCCTCAGGGTGCTTCTTCGTGTTTCCAAGGGCCTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAGGAATCCTCAGGGTGCTTCTTCGTGTTTCCAAGGGCCTCTCA  245

seq1  TTTACCATAAGAGTTAAAATAGCCTTGGTAAATATACAGCTTGCAATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATAAGAGTTAAAATAGCCTTGGTAAATATACAGCTTGCAATTGT  295

seq1  TTTATTATGTTTATCTATTGCTGGGCGGGGGAGGTACACGTGGCCACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATGTTTATCTATTGCTGGGCGGGGGAGGTACACGTGGCCACCAT  345

seq1  GTGCATGTGTGAACTTCTGAAGACAACTTTTAGGAGTTGATTTTTCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTGTGAACTTCTGAAGACAACTTTTAGGAGTTGATTTTTCCCCC  395

seq1  CTTCTCCCCCATGGGTTACAGGGATCAAGCCCCGGTCATCAGGCTTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCCCATGGGTTACAGGGATCAAGCCCCGGTCATCAGGCTTGGCA  445

seq1  ATGTCTCCACTTGCTCAACCATCTTGACATCCCCAAACATCCCTTGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCACTTGCTCAACCATCTTGACATCCCCAAACATCCCTTGTTTC  495

seq1  CAAGGTCAGGAAAATCTGGAGGCAGTCTGAATGCATAAACTCTCTTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCAGGAAAATCTGGAGGCAGTCTGAATGCATAAACTCTCTTCCTC  545

seq1  CCTAAATCATTCATTCTCATAAAGCTGTCAGAGGGCACAATCAATTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCATTCATTCTCATAAAGCTGTCAGAGGGCACAATCAATTGAAT  595

seq1  CTAGCATTGAGCTTTAAGCTTGAATCAGGTAAAAACTCACCCACCTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTGAGCTTTAAGCTTGAATCAGGTAAAAACTCACCCACCTTACT  645

seq1  GAAACAAGTTGTATACTGTGATTGTTTGCTAGGCAGCAACACTAATGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGTTGTATACTGTGATTGTTTGCTAGGCAGCAACACTAATGAAG  695

seq1  ATTTCAGATTTTCTCTCCCATTTATTTAGTGTGTGAGTCTCTCCGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGATTTTCTCTCCCATTTATTTAGTGTGTGAGTCTCTCCGTGTGT  745

seq1  GCGCATACATCGCAGGCCACTGTGTGGGAGTCAAAGGATAATTTGCTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATACATCGCAGGCCACTGTGTGGGAGTCAAAGGATAATTTGCTTGC  795

seq1  AGTGTTCTCTGCTTCCCCCATGTGTGTTCCAGGAATGGAACTGAGCGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTCTGCTTCCCCCATGTGTGTTCCAGGAATGGAACTGAGCGCAG  845

seq1  CAGGTTCGGTGGCAAGAACCATTAACTGCTGAGCAGTCTCTAGGTTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCGGTGGCAAGAACCATTAACTGCTGAGCAGTCTCTAGGTTCTGG  895

seq1  CCCAGCTCTCAGATTTTGACATCAAGTGGTGAAGAGTTCAGAGTCCTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCTCAGATTTTGACATCAAGTGGTGAAGAGTTCAGAGTCCTGTG  945

seq1  TTGGTGGAGGATAACAGAGGAAGGTTGTGTATTGGTGGAAATGGATAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGAGGATAACAGAGGAAGGTTGTGTATTGGTGGAAATGGATAAAT  995

seq1  CCTGATTCTGCTGAACTTGACAGTGAGTTAACACAAATTAGTGGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTCTGCTGAACTTGACAGTGAGTTAACACAAATTAGTGGAATTC  1044

seq1: chr13_41467244_41468470
seq2: B6Ng01-170F07.g_68_1279

seq1  GAATTCAGAGACCATTTCACATGGTTCAACTTTATTTTCCTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACCATTTCACATGGTTCAACTTTATTTTCCTTTTTTTTTT  50

seq1  CACATTTAACAAAGTGATCCATCTGGAAAGTGGATGTTTAAAAACTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTAACAAAGTGATCCATCTGGAAAGTGGATGTTTAAAAACTTTCA  100

seq1  CTATGAGAAATCACTTCTTTTCAGGGAAGATAATATATTTTTTTCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGAAATCACTTCTTTTCAGGGAAGATAATATATTTTTTTCCTCTC  150

seq1  TTTGGGTGGGGCAGGGGTGGATATTTAGATACGTGTTACACAAAGCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTGGGGCAGGGGTGGATATTTAGATACGTGTTACACAAAGCTACA  200

seq1  CTGTGGACCAAATAATAACATCAACACCAAAGGATAAAGGCATACACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACCAAATAATAACATCAACACCAAAGGATAAAGGCATACACCAG  250

seq1  CCCAGACTTCCTTCCTATACACTCAGAGCATTGAGGTAAATGGAATGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTTCCTTCCTATACACTCAGAGCATTGAGGTAAATGGAATGACC  300

seq1  GTCAGAAGATCTTACAGGTACTGTTGGCATCTGTGGCTCAGGAAGTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAGATCTTACAGGTACTGTTGGCATCTGTGGCTCAGGAAGTCAGC  350

seq1  GCAGAGCATGGCTCAGGTTGATGGGACCTCAAGGCTATTTGCATGTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCATGGCTCAGGTTGATGGGACCTCAAGGCTATTTGCATGTCCAT  400

seq1  GCTCCAAGACTTGTTCCACAGGGACCTACAGTTCCAGAGAGAGAGGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAGACTTGTTCCACAGGGACCTACAGTTCCAGAGAGAGAGGCAAA  450

seq1  GGCAGACTCCACTCAGGCTCCAGGAATGAAATGTATTTATCTATTTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACTCCACTCAGGCTCCAGGAATGAAATGTATTTATCTATTTTGTG  500

seq1  ATGCTAGGGACTGAATTCTGGCCTTTCTGTATGCTAGACAACTCAACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGGGACTGAATTCTGGCCTTTCTGTATGCTAGACAACTCAACCAC  550

seq1  TGAGCCACAACCTTAGCCTTTCAATAAAGAAATTTTATACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACAACCTTAGCCTTTCAATAAAGAAATTTTATACACACACACAC  600

seq1  ACACACACACACACACACACACACAGACCTACATATATATACACACACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACAGACCTACATATATATACACACACAA  650

seq1  ACATATAATATAGACACATAATATATATTCACTTGCATTTATAATATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAATATAGACACATAATATATATTCACTTGCATTTATAATATATA  700

seq1  CATATATTGTATATGCACATATAACACATACACATATATAATATAGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTGTATATGCACATATAACACATACACATATATAATATAGACAC  750

seq1  ATATATTCACTTGCATTTATAATATACATACAAGTATATTATATATACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCACTTGCATTTATAATATACATACAAGTATATTATATATACAC  800

seq1  ATACACACACACAAACTCACACATGTCGTAACACATATTCATTTTCAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACAAACTCACACATGTCGTAACACATATTCATTTTCAGGT  850

seq1  ACTTTGAACTTTGGGCTTTGCAGAAGCTGAGCAGTGCTCTACCCCTGAGC  900
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  ACTTTGAACTTTGGGCTTTGCAGAGGCTGAGCAGTGCTCTACCTCTGAGC  900

seq1  TCTGTTCCCCAGCAGGACTGAGCTTCTTTTTAGTTCTTCTAGCGTTAAGT  950
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  TCTGTTCCCCAGCA-GACTGAGCTTCTTTTTAGTTCTTCTAGCG-TAAGT  948

seq1  TTAGCCACATCACTCAGCACGGCTGTTTGTTAACCACCTCAAGACACTGC  1000
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  TTAGCCACATCACTTAGCACGGCTGTTTGTTAACCACCTC-AGACACTGC  997

seq1  ACTGAACAGTCAAGGCCTCTGAAGCACAGTTTGGCCAAAGCCTTTCTG-A  1049
      |||||||||||| ||| ||||||| ||||||||||||||||||||||| |
seq2  ACTGAACAGTCAGGGCTTCTGAAGTACAGTTTGGCCAAAGCCTTTCTGAA  1047

seq1  CCTGCAAGGGTCCAGCTGAAG-AAGCCATTCTTAAAGGTCAC-TGGGCTC  1097
      | ||||||||| ||||||||| ||||||||||| |||||||| ||||| |
seq2  CTTGCAAGGGT-CAGCTGAAGAAAGCCATTCTTTAAGGTCACTTGGGCCC  1096

seq1  AGTGTGCTCCTTCGGTTTCTGTTTTCTGCAGGAAGTAAGGGTTTTCACTT  1147
      || |||| ||||| | |||||||||| || |||||  | |||||||||||
seq2  AG-GTGCCCCTTCCGGTTCTGTTTTC-GC-GGAAG--ATGGTTTTCACTT  1141

seq1  CACACCCACAGAAACCAAGATGGCTGCCCAGGAAACACTCCCCCTCAGCC  1197
      ||||||| |||||| ||| |  |||| |||||||||| || |||| ||||
seq2  CACACCC-CAGAAATCAAAA--GCTGTCCAGGAAACA-TCTCCCT-AGCC  1186

seq1  TGGCTCAGTCTAGTTCTTTAAAACAAAGTG  1227
      | |||||||| |||   ||  |||||||||
seq2  T-GCTCAGTC-AGTCTATT--AACAAAGTG  1212