BAC Information

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BAC

Clone NameB6Ng01-170J17
Chromosome13 (Build37)
Map Location 55,070,584 - 55,189,176
singlet/doubletdoublet
Overlap geneUnc5a, Hk3, Uimc1, LOC622707
Upstream geneDrd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17
Downstream geneZfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170J17.bB6Ng01-170J17.g
ACCDH961276DH961277
length4111,074
definitionDH961276|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J17, 5' end.DH961277|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,188,760 - 55,189,176)(55,070,584 - 55,071,658)
sequence
tacttctgaaccaacaggcagcaggaagtgaactgagtcactaagcctgg
cttgaacttttgagatcttaaagcccaccccctagtgacacacttcctcc
aacaaagccaaacccaccacaaggcctcacctctcaatagtgctctgggc
caaacattcaaacacatgagtctatggggctattcttattaaaccaccac
agcattcttttcataatttcttttattgtcttttcttattttggctacta
tctgagttttcagttttgattagtattatttgacttttgcttttaatcta
tgtagtagttgatcgatatattttactttctgctttttttattaatagca
taatttctgcattatgagaagatagaaatggaggagaagtggatctgggg
gagaggggagg
gaattcaaaggaactgttttctccttgataaaaagctgacaaactgaaag
aaaagaaacaaaaggttggacagccaagcagcctgcttggtggagaagcg
ggagatgtgcttttgggcaaagaatcaaaactcatctccctttctcactc
actcaaataaagtcatggactttgcagttaaatctcaactcttttggatg
atggtaaaatgccaggccagtgaaggatggctttaggggaggtctacctc
ggaggcagtgggcgcactgagtttggatcggggtcacatcatggagactg
tctaggtggaaggaatttggggcacagaaggacaggagtgcactggacag
gatgagaagggagctgaagaagttatccatgtccccctcccccatcgcag
ggctgaggacagatgtagcctgctgtgtggcccagtgtgggaggtacatc
cgggttgaggggggtgtgtcggtcacagatcaactggtgtgctgtagtaa
ttcaatttgcacatctgtggaatggatgcagtgaaagccggtgcaagccg
gccttacagagatgtgagagcatctgagagcccagagatgatgctgtgca
ggcaatggtgacgtccccgaaagctgagtgactgtcgagacagctgccgt
ggaaaggagaccagtacatgaaactcagcctggtccacctggaactagct
caggaagaagagtctgtgcgggaaacatggaagaagtctacaaaaatcag
cgagaaggggccactctgctcctcggctaaaatcgctgcctcacaggcag
ccccctccctagcccggcccccaaccaagctcaggagaagacagctttaa
aaccagtaacaggaactctgctggtactcggcagggacaactttgaaatc
gtttctctagaggtggatacagaccggaaatataaattgcttccaggagg
gttagataagttcgtggaatgtggaggccagaatggttcctggccaaata
gatggtgaggaggcctcttgctccggtgagacgatgtgaaaaaggagttc
ccatcagagcaggatgcctgggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55188760_55189176
seq2: B6Ng01-170J17.b_51_467 (reverse)

seq1  CCTCCCCTCTCCCCCAGATCCACTTCTCCTCCATTTCTATCTTCTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCTCCCCCAGATCCACTTCTCCTCCATTTCTATCTTCTCATAA  50

seq1  TGCAGAAATTATGCTATTAATAAAAAAAGCAGAAAGTAAAATATATCGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAATTATGCTATTAATAAAAAAAGCAGAAAGTAAAATATATCGAT  100

seq1  CAACTACTACATAGATTAAAAGCAAAAGTCAAATAATACTAATCAAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACTACATAGATTAAAAGCAAAAGTCAAATAATACTAATCAAAACT  150

seq1  GAAAACTCAGATAGTAGCCAAAATAAGAAAAGACAATAAAAGAAATTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCAGATAGTAGCCAAAATAAGAAAAGACAATAAAAGAAATTATG  200

seq1  AAAAGAATGCTGTGGTGGTTTAATAAGAATAGCCCCATAGACTCATGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGCTGTGGTGGTTTAATAAGAATAGCCCCATAGACTCATGTGT  250

seq1  TTGAATGTTTGGCCCAGAGCACTATTGAGAGGTGAGGCCTTGTGGTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTTTGGCCCAGAGCACTATTGAGAGGTGAGGCCTTGTGGTGGGT  300

seq1  TTGGCTTTGTTGGAGGAAGTGTGTCACTAGGGGGTGGGCTTTAAGATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTGTTGGAGGAAGTGTGTCACTAGGGGGTGGGCTTTAAGATCTC  350

seq1  AAAAGTTCAAGCCAGGCTTAGTGACTCAGTTCACTTCCTGCTGCCTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCAAGCCAGGCTTAGTGACTCAGTTCACTTCCTGCTGCCTGTTG  400

seq1  GTTCAGAAGTAGAATTC  417
      |||||||||||||||||
seq2  GTTCAGAAGTAGAATTC  417

seq1: chr13_55070584_55071658
seq2: B6Ng01-170J17.g_66_1139

seq1  GAATTCAAAGGAACTGTTTTCTCCTTGATAAAAAGCTGACAAACTGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGAACTGTTTTCTCCTTGATAAAAAGCTGACAAACTGAAAG  50

seq1  AAAAGAAACAAAAGGTTGGACAGCCAAGCAGCCTGCTTGGTGGAGAAGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACAAAAGGTTGGACAGCCAAGCAGCCTGCTTGGTGGAGAAGCG  100

seq1  GGAGATGTGCTTTTGGGCAAAGAATCAAAACTCATCTCCCTTTCTCACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTGCTTTTGGGCAAAGAATCAAAACTCATCTCCCTTTCTCACTC  150

seq1  ACTCAAATAAAGTCATGGACTTTGCAGTTAAATCTCAACTCTTTTGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATAAAGTCATGGACTTTGCAGTTAAATCTCAACTCTTTTGGATG  200

seq1  ATGGTAAAATGCCAGGCCAGTGAAGGATGGCTTTAGGGGAGGTCTACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAAATGCCAGGCCAGTGAAGGATGGCTTTAGGGGAGGTCTACCTC  250

seq1  GGAGGCAGTGGGCGCACTGAGTTTGGATCGGGGTCACATCATGGAGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGTGGGCGCACTGAGTTTGGATCGGGGTCACATCATGGAGACTG  300

seq1  TCTAGGTGGAAGGAATTTGGGGCACAGAAGGACAGGAGTGCACTGGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTGGAAGGAATTTGGGGCACAGAAGGACAGGAGTGCACTGGACAG  350

seq1  GATGAGAAGGGAGCTGAAGAAGTTATCCATGTCCCCCTCCCCCATCGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAAGGGAGCTGAAGAAGTTATCCATGTCCCCCTCCCCCATCGCAG  400

seq1  GGCTGAGGACAGATGTAGCCTGCTGTGTGGCCCAGTGTGGGAGGTACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGACAGATGTAGCCTGCTGTGTGGCCCAGTGTGGGAGGTACATC  450

seq1  CGGGTTGAGGGGGGTGTGTCGGTCACAGATCAACTGGTGTGCTGTAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTGAGGGGGGTGTGTCGGTCACAGATCAACTGGTGTGCTGTAGTAA  500

seq1  TTCAATTTGCACATCTGTGGAATGGATGCAGTGAAAGCCGGTGCAAGCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTGCACATCTGTGGAATGGATGCAGTGAAAGCCGGTGCAAGCCG  550

seq1  GCCTTACAGAGATGTGAGAGCATCTGAGAGCCCAGAGATGATGCTGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACAGAGATGTGAGAGCATCTGAGAGCCCAGAGATGATGCTGTGCA  600

seq1  GGCAATGGTGACGTCCCCGAAAGCTGAGTGACTGTCGAGACAGCTGCCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGGTGACGTCCCCGAAAGCTGAGTGACTGTCGAGACAGCTGCCGT  650

seq1  GGAAAGGAGACCAGTACATG-AACTCAGCCTGGTCCACCTGGAACTAGCT  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAAAGGAGACCAGTACATGAAACTCAGCCTGGTCCACCTGGAACTAGCT  700

seq1  CAGGAAGAAGAGTCTGTG-GGGAAACATGGAAGAAGTCTAC-AAAATCAG  747
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  CAGGAAGAAGAGTCTGTGCGGGAAACATGGAAGAAGTCTACAAAAATCAG  750

seq1  CGAGAAGGGGCCACTCTGCTCCTCGGCT-AAATCGCTGCCTCACAGGCAG  796
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CGAGAAGGGGCCACTCTGCTCCTCGGCTAAAATCGCTGCCTCACAGGCAG  800

seq1  CCCCCTCCCTAGCCCGGCCCCCCAACCAAGCTCAGGAGAAGACAGCTTTA  846
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCTAGCCCGG-CCCCCAACCAAGCTCAGGAGAAGACAGCTTTA  849

seq1  AAACCAGTAACAGGAAACCCTGCT-GTACTCGGCAGGGAACAAACTTTGA  895
      |||||||||||||| ||| ||||| ||||||||||||||   ||||||| 
seq2  AAACCAGTAACAGG-AACTCTGCTGGTACTCGGCAGGGA--CAACTTTG-  895

seq1  AAATCGTTTCCCCTAGAGGT-GATACAGACCGGAAATATAAATTGCTTCC  944
      ||||||||| | |||||||| |||||||||||||||||||||||||||||
seq2  AAATCGTTT-CTCTAGAGGTGGATACAGACCGGAAATATAAATTGCTTCC  944

seq1  AGGAGGGTTTAGATAAGTTCGTGGATTGTGGA-GCCAGAATGGTTCCTGG  993
      ||||||| ||||||||||||||||| |||||| |||||||||||||||||
seq2  AGGAGGG-TTAGATAAGTTCGTGGAATGTGGAGGCCAGAATGGTTCCTGG  993

seq1  GCAAAATTAGAATGTGAGGAGGCCTC-TGCCCCGTGAAGACGATGTGAGA  1042
       ||||  ||||  ||||||||||||| ||| |||   ||||||||||| |
seq2  CCAAA--TAGATGGTGAGGAGGCCTCTTGCTCCGGTGAGACGATGTGAAA  1041

seq1  GAGGGAGTCCCATCAGAGCAGGATGCCTGGGCA  1075
       |||   ||||||||||||||||||||||||||
seq2  AAGGAGTTCCCATCAGAGCAGGATGCCTGGGCA  1074