BAC Information

Click to search

BAC

Clone NameB6Ng01-170N07
Chromosome13 (Build37)
Map Location 24,363,669 - 24,364,796
singlet/doubletsinglet
Overlap geneLrrc16
Upstream geneZfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170N07.bB6Ng01-170N07.g
ACCDH961445DH961446
length1,1671,115
definitionDH961445|Mus musculus domesticus DNA, BAC clone: B6Ng01-170N07, 5' end.DH961446|Mus musculus domesticus DNA, BAC clone: B6Ng01-170N07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacccgaggaatattgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tctacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtaataccggaagatcccgcaatacctctcctgggc
atatatccagaagatgtcccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaataaatttatgaaattcctaggca
aatggatggacctggacagcatcatcctgagtgaggtaacacaatcacaa
aagaactcaaataatatgtactcactgataagtggatattagcccagaaa
cttaatatattgagatataaggtacaatttgcaaaacacatgaaactgaa
gaagaatgaagaccaaagtgtggacactttgccccttcttagaattggaa
acaatcacccatggaaggagttacagagacaaagtttggagctgagacaa
aaggatggaccatcaagagactgccatatccagggatccatcccataatt
agcctccaaatgatgacaccattgcatacactaacaagcatttggtgcaa
ggactgtgatatagccgtctcttgtgagactaggccggggcctaacaaac
acagaagtggatgctcacaatcaactattgaatggatcacagggccccaa
tggaggagctagagaaagtacacaggagctaaagggatctgcaccctgta
gtgcacattatgactaaccagtaccccggagctcttgactctagctgcat
atatatcaaagatggcctagtcgccatccactggaagagaggtccatgac
tgccaactttaattgccagtaaggggtacgctgggccaaaatgggaatgg
gtggggtagaggggttg
gaattctctagaagtgaatattcagttagcaaatgactgaaaaagagtct
aagacacacagagtcacttactaaaaataactcctaaaaaccaaagaggc
atctctgcaaaagaaggactggctctccaccatggccacagagaccacat
tcccactaggacccagggactgagggactgtcctctagaagagcactcag
aaggaaagctcaactattgtagtctttaaacctccaaagccctggcctgt
actacccccgtttgtaacattgggttctctgaccaagtctgaagccctag
tctactttattctttaaaatgcacagaagtatactcatccctccggagct
gaagagatggcttagcactgaacagcaccggctgttcttctaaaggatcc
aagttcagttcccagcacccacatggctgttcctagtagtctctaactcc
agttcttggggatctaatgtcctcttctaaccttttcaggtaccagtcac
acatatatatatgcagggaaaacactcatgcttattaaaagataggaata
ataaaaaaataatttaaaaataaaatttcagaaaggatattaatgtccct
ggaagtccaaagttgagactgatttattactaacaccctggttgccaaat
ttataaaagcacagaattgctttcattctaagacaccatagcctgttgct
ttctaacgatgccattcataaggtgccaccagctcttggccttacaaaca
aatctctgcccctcagtggaagcatcaggtaccaggatttaagattaaca
tgtttttggtcagtgacaaaagagaaagcaaggacccttggttagtgaag
catcatgataaagtattaggtttcacgggatgcctgccagtttgtaaata
catgtgcataattcccaaagccaagcatatgatcgctacggttacagcac
ccagcttcattcaagaaagcaattgactaacattggtctaagttgctagc
cttttgcacctcccaccactgagagaccagcggaggctcatcaggagcaa
gtggttataaaaaaaaataaaaaaactggtggaaaggagacctgtgctga
acagttctgattttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24363669_24364796
seq2: B6Ng01-170N07.g_69_1183

seq1  GAATTCTCTAGAAGTGAATATTCAGTTAGCAAATGACTGAAAAAGAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGAAGTGAATATTCAGTTAGCAAATGACTGAAAAAGAGTCT  50

seq1  AAGACACACAGAGTCACTTACTAAAAATAACTCCTAAAAACCAAAGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACACAGAGTCACTTACTAAAAATAACTCCTAAAAACCAAAGAGGC  100

seq1  ATCTCTGCAAAAGAAGGACTGGCTCTCCACCATGGCCACAGAGACCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCAAAAGAAGGACTGGCTCTCCACCATGGCCACAGAGACCACAT  150

seq1  TCCCACTAGGACCCAGGGACTGAGGGACTGTCCTCTAGAAGAGCACTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTAGGACCCAGGGACTGAGGGACTGTCCTCTAGAAGAGCACTCAG  200

seq1  AAGGAAAGCTCAACTATTGTAGTCTTTAAACCTCCAAAGCCCTGGCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGCTCAACTATTGTAGTCTTTAAACCTCCAAAGCCCTGGCCTGT  250

seq1  ACTACCCCCGTTTGTAACATTGGGTTCTCTGACCAAGTCTGAAGCCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCCCGTTTGTAACATTGGGTTCTCTGACCAAGTCTGAAGCCCTAG  300

seq1  TCTACTTTATTCTTTAAAATGCACAGAAGTATACTCATCCCTCCGGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTATTCTTTAAAATGCACAGAAGTATACTCATCCCTCCGGAGCT  350

seq1  GAAGAGATGGCTTAGCACTGAACAGCACCGGCTGTTCTTCTAAAGGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATGGCTTAGCACTGAACAGCACCGGCTGTTCTTCTAAAGGATCC  400

seq1  AAGTTCAGTTCCCAGCACCCACATGGCTGTTCCTAGTAGTCTCTAACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGTTCCCAGCACCCACATGGCTGTTCCTAGTAGTCTCTAACTCC  450

seq1  AGTTCTTGGGGATCTAATGTCCTCTTCTAACCTTTTCAGGTACCAGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGGGGATCTAATGTCCTCTTCTAACCTTTTCAGGTACCAGTCAC  500

seq1  ACATATATATATGCAGGGAAAACACTCATGCTTATTAAAAGATAGGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATATGCAGGGAAAACACTCATGCTTATTAAAAGATAGGAATA  550

seq1  ATAAAAAAATAATTTAAAAATAAAATTTCAGAAAGGATATTAATGTCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAATAATTTAAAAATAAAATTTCAGAAAGGATATTAATGTCCCT  600

seq1  GGAAGTCCAAAGTTGAGACTGATTTATTACTAACACCCTGGTTGCCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCAAAGTTGAGACTGATTTATTACTAACACCCTGGTTGCCAAAT  650

seq1  TTATAAAAGCACAGAATTGCTTTCATTCTAAGACACCATAGCCTGTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGCACAGAATTGCTTTCATTCTAAGACACCATAGCCTGTTGCT  700

seq1  TTCTAACGATGCCATTCATAAGGTGCCACCAGCTCTTGGCCTTACAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACGATGCCATTCATAAGGTGCCACCAGCTCTTGGCCTTACAAACA  750

seq1  AATCTCTGCCCCTCAGTGGAAGCATCAGGTACCAGGATTTAAGATTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGCCCCTCAGTGGAAGCATCAGGTACCAGGATTTAAGATTAACA  800

seq1  TG-TTTTGGTCAGTGACAAAAGAGAAGGCAAGGACCCTTGGTTAGTGAAG  849
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTTTTTGGTCAGTGACAAAAGAGAAAGCAAGGACCCTTGGTTAGTGAAG  850

seq1  CATCATGATAAAGTATTAGGTTTCACGGGATGCCTGCCAGTTTGTAAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGATAAAGTATTAGGTTTCACGGGATGCCTGCCAGTTTGTAAATA  900

seq1  CATGTGCATAATTCCCAAAGCCAAGCATATGAATCGCTAACGGTTACAGC  949
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  CATGTGCATAATTCCCAAAGCCAAGCATATG-ATCGCT-ACGGTTACAGC  948

seq1  ACCCAGCTTCATTCAAGAAAGCAATTGACTAACATTGTTCTAAAGTTGCT  999
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  ACCCAGCTTCATTCAAGAAAGCAATTGACTAACATTGGTCT-AAGTTGCT  997

seq1  AAGCCTTTTGCACCTCCCACCACTGGAGAGAACCAAGCGAGGCTCATCAA  1049
       ||||||||||||||||||||||| ||||| ||||   ||||||||||| 
seq2  -AGCCTTTTGCACCTCCCACCACT-GAGAG-ACCAGCGGAGGCTCATCAG  1044

seq1  GAGCAAGTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGGGTGAAA  1099
      |||||||||||          | ||||||||| |||||||| ||  ||||
seq2  GAGCAAGTGGT---------TATAAAAAAAAATAAAAAAACTGGTGGAAA  1085

seq1  GGAGACCTGT-CTGACCAGTCCTGATTTTC  1128
      |||||||||| |||| |||| |||||||||
seq2  GGAGACCTGTGCTGAACAGTTCTGATTTTC  1115