BAC Information

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BAC

Clone NameB6Ng01-170P01
Chromosome13 (Build37)
Map Location 13,034,181 - 13,035,311
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754
Downstream genePrl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170P01.bB6Ng01-170P01.g
ACCDH961529DH961530
length1,1311,154
definitionDH961529|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P01, 5' end.DH961530|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgtccctcaatatgtgctgtctcctagaaaccttgacacattc
aatgacttggagattgcaaattgtaaaaagaaatcaatgatcagagtgct
aataaatttgacacatatttaattggaaatgttttgaaagatgaaattta
tatactgtgaaaatgacccttttacttacatttcatacttgttctattgt
ctcatctataataatctaactcttgaagccccctagactctccttagctg
gctattctcagtcatcctaaaagtttcaaactagacaaaaatcttcatca
ccagtacccaaggtctcaactggaactgaagtgtaccttaacaagtagcc
tctctggatcattttgcaggtccagcaaccttcacccattgttaagtctg
tgactccgtgcatgatatcttcatatcctccacttctaacacacaatttt
tttttaccatctttcacttctgatatcccactataaattttctaagatgt
ttatactcaacattatcatataatcctatacccatgtatatgtgcactta
taaccgatcctccatgtcttgcccaatggcataagcactctgtgggtcaa
aatttctcatttaaataactgatataagcaaaagaaagtgagactaaaaa
tgaactggggggggtgatatataagtttgttactactctatcaacttcct
aaagctctctactgacatttcagaatttagtcctctctagaactctgtaa
catatgtccagtggctacattttatattataagccatcttttgtcttcaa
ataaatgtattaaatatgcattgaattgccaaggaaaattgtattatgtc
ctttgtggacaaaagctatgtgaaccatttatttctctacttttagtgtg
cttcaattctggtttcttattcacagtcatattgatattggtgcccagtc
tactaaaggcttagactacctctgtacatcttacaagaaatgttcagctt
cttggggagaattcttattttcttttctgtaagacagaaagactcttgag
aaaaaaaacctatgacttctctatggattaattgaaagcattcttcccaa
aataaaaggctgcttgtacttctcgttcttt
gaattcttggtttagttctacacaccatttttgtgattgggttgtttggg
ttttttggtggttagcttctttagttctttatatattttgcatattatcc
ctgtgtcagatgtggggttagtgaagtttttttccaatctgtaggttgca
tatttttattattgactatgtttccttacaggagctttccagtttcatga
ggtctcattgatcaatacttgatcttagagcatgagccactggagttctt
tttaggaaatttcccccctgttccaatgagttcaagtctctttcccactt
acttttctattagattcagtgtatctggttttatgtttaggtccataatc
cacttagatttgagttttgtgtaaggtggcaaatatggggctattttaat
ttttctacatacaaccagccagttagaccagcaatatttatggaagatac
tttcctttttacattgtatatttttggcatctttgtcaaagagcaagtgt
ccataagtttgttgttttatatctgggtcttcaattctattccattgatc
aatgtctcatctctgtgaggataccatgtagtttttatctctattgctct
gtagtaaagcttgaggtcagagatggtgattcccccagccattctttcat
tggtaggaattgtttttgctattctgtttttacttgccttttcagatgaa
tttgagaattgctttccatgtctttgaagaattgtgttgggattttgatg
gggattgcattgaatctgaagattgcctttggtgggatggccattttttc
tatactaattctgccaatccatgagcatggaagatctcaccttttactga
catctcaatttctttcttgagaacttgaagtattttcatgcaggtctttg
acttgttggttagagttaccccaagatattttgtattttagtggctattg
ttaagggacctgtttctttctcagcctgtttatcatttgataaagaacgc
tatctgattgttggatccatcttattctggcccacttggcctaagttttt
atcaagctgggaagttcgtgagtagattttgggtgcattaggtacctacc
acactcccgaaagggaacttgatttatctgtgagtgaactctattaacta
cagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13034181_13035311
seq2: B6Ng01-170P01.b_46_1176 (reverse)

seq1  AAAGAA-GAGAAGTACAAGCAGACTTTTTATTTTGGGAAGAATGC-TTCT  48
      |||||| ||||||||||||||| | |||||||||||||||||||| ||| 
seq2  AAAGAACGAGAAGTACAAGCAG-CCTTTTATTTTGGGAAGAATGCTTTCA  49

seq1  AATAATCCAT--AGAAGTCATAAGTTTTTTTTTCTC-AGAGTCTATCTGT  95
      | ||||||||  ||||||||| || ||||||||||| ||||||| |||||
seq2  ATTAATCCATAGAGAAGTCAT-AGGTTTTTTTTCTCAAGAGTCTTTCTGT  98

seq1  CTTTACAGAAAAGAAAATAAGAA-TCTCCCC-AGAAGCTGGACAATTTCT  143
      | ||||||||||||||||||||| ||||||| |||||||| || ||||| 
seq2  C-TTACAGAAAAGAAAATAAGAATTCTCCCCAAGAAGCTGAAC-ATTTC-  145

seq1  TTGTAAGATGGTACAGAGGTAGTCTAAGCCTTTAGTAGACTGGGCACCAA  193
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGAT-GTACAGAGGTAGTCTAAGCCTTTAGTAGACTGGGCACCAA  194

seq1  TATCAATATGACCTGTGAATAAGAAACCAGAATTGAAGCACACTAAAAGT  243
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATCAATATGA-CTGTGAATAAGAAACCAGAATTGAAGCACACTAAAAGT  243

seq1  AGAGAAATAAATGGTTCACATAGCTTTTGTCCACAAAGGACATAATACAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATAAATGGTTCACATAGCTTTTGTCCACAAAGGACATAATACAA  293

seq1  TTTTCCTTGGCAATTCAATGCATATTTAATACATTTATTTGAAGACAAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGGCAATTCAATGCATATTTAATACATTTATTTGAAGACAAAA  343

seq1  GATGGCTTATAATATAAAATGTAGCCACTGGACATATGTTACAGAGTTCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTATAATATAAAATGTAGCCACTGGACATATGTTACAGAGTTCT  393

seq1  AGAGAGGACTAAATTCTGAAATGTCAGTAGAGAGCTTTAGGAAGTTGATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGACTAAATTCTGAAATGTCAGTAGAGAGCTTTAGGAAGTTGATA  443

seq1  GAGTAGTAACAAACTTATATATCACCCCCCCCAGTTCATTTTTAGTCTCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTAACAAACTTATATATCACCCCCCCCAGTTCATTTTTAGTCTCA  493

seq1  CTTTCTTTTGCTTATATCAGTTATTTAAATGAGAAATTTTGACCCACAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTGCTTATATCAGTTATTTAAATGAGAAATTTTGACCCACAGA  543

seq1  GTGCTTATGCCATTGGGCAAGACATGGAGGATCGGTTATAAGTGCACATA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTATGCCATTGGGCAAGACATGGAGGATCGGTTATAAGTGCACATA  593

seq1  TACATGGGTATAGGATTATATGATAATGTTGAGTATAAACATCTTAGAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGGTATAGGATTATATGATAATGTTGAGTATAAACATCTTAGAAA  643

seq1  ATTTATAGTGGGATATCAGAAGTGAAAGATGGTAAAAAAAAATTGTGTGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGTGGGATATCAGAAGTGAAAGATGGTAAAAAAAAATTGTGTGT  693

seq1  TAGAAGTGGAGGATATGAAGATATCATGCACGGAGTCACAGACTTAACAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGGAGGATATGAAGATATCATGCACGGAGTCACAGACTTAACAA  743

seq1  TGGGTGAAGGTTGCTGGACCTGCAAAATGATCCAGAGAGGCTACTTGTTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAAGGTTGCTGGACCTGCAAAATGATCCAGAGAGGCTACTTGTTA  793

seq1  AGGTACACTTCAGTTCCAGTTGAGACCTTGGGTACTGGTGATGAAGATTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACACTTCAGTTCCAGTTGAGACCTTGGGTACTGGTGATGAAGATTT  843

seq1  TTGTCTAGTTTGAAACTTTTAGGATGACTGAGAATAGCCAGCTAAGGAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGTTTGAAACTTTTAGGATGACTGAGAATAGCCAGCTAAGGAGA  893

seq1  GTCTAGGGGGCTTCAAGAGTTAGATTATTATAGATGAGACAATAGAACAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGGGGCTTCAAGAGTTAGATTATTATAGATGAGACAATAGAACAA  943

seq1  GTATGAAATGTAAGTAAAAGGGTCATTTTCACAGTATATAAATTTCATCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAATGTAAGTAAAAGGGTCATTTTCACAGTATATAAATTTCATCT  993

seq1  TTCAAAACATTTCCAATTAAATATGTGTCAAATTTATTAGCACTCTGATC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACATTTCCAATTAAATATGTGTCAAATTTATTAGCACTCTGATC  1043

seq1  ATTGATTTCTTTTTACAATTTGCAATCTCCAAGTCATTGAATGTGTCAAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTCTTTTTACAATTTGCAATCTCCAAGTCATTGAATGTGTCAAG  1093

seq1  GTTTCTAGGAGACAGCACATATTGAGGGACAAGAATTC  1131
      ||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGGAGACAGCACATATTGAGGGACAAGAATTC  1131