BAC Information

Click to search

BAC

Clone NameB6Ng01-170P16
Chromosome8 (Build37)13 (Build37)
Map Location 36,642,640 - 36,642,7886,169,998 - 6,171,171
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1
Downstream geneMfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170P16.bB6Ng01-170P16.g
ACCDH961559DH961560
length1,0261,187
definitionDH961559|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P16, 5' end.DH961560|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,642,640 - 36,642,788)(6,169,998 - 6,171,171)
sequence
gaattccagactcagcatctactcttccactgaggcagtctaggcaggag
gtgatccactgagcaacaacggagtcagagacagcccttctccaattgtt
agggggactacttgaagaccaagctgcacatttgcaacaaatgtgtagga
tcctaggtccagcctgtgtatgctccttggttgatagttttagcctaggt
tagtgggctctgtaggtcttctgttacgtctttgacccttccagcttgct
catttctaacccccactcttccctgggctccacttgatctttggctgtag
gtctctgcacctgttttcatctgctgctggatgaagcctctcagaagaca
gatatgctatgttcctgtctgcaagcatagcagagtatcattaatagtgt
caggggttggctctctcccatgggatgggtcttaagttggggcattggtt
ggctgttcccttagtctctgctccatctttattcctgcacatcttatagg
caggtcaatttgggtgcattgatatactcctcccttcactggaagtcctg
ttgggctacaaaatgtggcctcttcagtctccttatcccctgctggtaga
aatctcagctaaggtcatccccatagattcttagtaggctccaccatctc
aggccttcaactagtcaccagagatgtccactccccttttccattcttac
tgcctgccctccatcaaaatcccatccccccacacctgatctccatccct
gttcccctcctcacccacctctttcatccagttcccttctccatccacct
tctctgactattttgttttcctttctaaggatgattcatgcatcctcttt
aggcctttttctctctctctctctttttttaagatgtaaggatggacttt
tttttttaaatctttttaggactacaaattacaaagggaaagcagatcac
tacacagaatctaatgaaaatatttgcctggtgcatgaaactttatcaaa
gtcattcattttacaaattcacccac
gaattctcttgcttgtgcctgcatactgtgtagccaaacccacttcaggc
ctctatcagtattcacgtaaccatttgttctggcttccttcataagggag
cctgcgatacagagaaagtatgccttctacaaactggttaaatcacacag
cactgcagcccagccttgcactgttggattggggacgctattgatttcca
gcatagtagacattcacatacagttcagtttttcagttttctacattcta
gtatcagaggcatcaggagcattcttacaagacctgtcggatgcttgctg
acagtgcaacccaagctggcccaggactcagtctcctcacctattttgaa
ttccaatgtaatgccttcatgctgaatgactctatcctccttgctggagg
gagatgtttttgtgttgtttttcttgataaaatgaggaccaaaatagtag
atgacaacaccacgccctgcagtctgccagccacctataaaagccatatg
ttcattaagttaataaatttgacctaaatctgtttccatacctgtgtgat
aaaatttcgtctacagctgcctctgtgtacagggaacatcaacctaacct
agcctataagtaaactgaaacctgatttaacagtatgttcttgtagttgt
cgggtttctccagagaagcagaattagtggaataaatgtacaccatgtta
ggggtatgctaccctggctcatgcagtagaggttggatagtttagcaagt
agccctgagcttacctgagagcttaaggaactgcttcccctctcacgaag
ctaagcgtctcaggagtcccagtgtgatgctgaagtcctagcatcttcct
agagcacttctgctcttcagttcatggaaaagctgaaagaaactagtgtt
gatattcagggaaatacggcagcagtcagcagatctgatgcacacagcag
ccagaagcaaacacagcttttgtcatggacccgaatcagctcaggtgtgg
gtcttttgtcctgtgaagtgatttttcccatagaattcaatcttagttga
ttccagaaggcaggtaagttgaacgatcatgaattttacaattcttgatt
tctgtaacaaagtggctgaattgcaaccagtatagctcaaggtttccaca
cggtttaaatatctctctatatttaacacaggtctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_36642640_36642788
seq2: B6Ng01-170P16.b_918_1068

seq1  TTTTTTT------CAAGGATGGACTTTATCTATTTTTTTTAATCTTTTTA  44
      |||||||       |||||||||||||     ||||||| ||||||||||
seq2  TTTTTTTAAGATGTAAGGATGGACTTT-----TTTTTTTAAATCTTTTTA  45

seq1  GGACTACAAATTACAAAGGGAAAGCAGATCACTACACAGAATCTAATGAA  94
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACAAATTACAAAGGGAAAGCAGATCACTACACAGAATCTAATGAA  95

seq1  TACATTTGCC-CGTGCATAAAACTTTATCAAAGTCATTCATTTTACAAAT  143
       | |||||||  |||||| |||||||||||||||||||||||||||||||
seq2  AATATTTGCCTGGTGCATGAAACTTTATCAAAGTCATTCATTTTACAAAT  145

seq1  TCACCC  149
      ||||||
seq2  TCACCC  151

seq1: chr13_6169998_6171171
seq2: B6Ng01-170P16.g_71_1257

seq1  GAATTCTCTTGCTTGTGCCTGCATACTGTGTAGCCAAACCCACTTCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGCTTGTGCCTGCATACTGTGTAGCCAAACCCACTTCAGGC  50

seq1  CTCTATCAGTATTCACGTAACCATTTGTTCTGGCTTCCTTCATAAGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCAGTATTCACGTAACCATTTGTTCTGGCTTCCTTCATAAGGGAG  100

seq1  CCTGCGATACAGAGAAAGTATGCCTTCTACAAACTGGTTAAATCACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGATACAGAGAAAGTATGCCTTCTACAAACTGGTTAAATCACACAG  150

seq1  CACTGCAGCCCAGCCTTGCACTGTTGGATTGGGGACGCTATTGATTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGCCCAGCCTTGCACTGTTGGATTGGGGACGCTATTGATTTCCA  200

seq1  GCATAGTAGACATTCACATACAGTTCAGTTTTTCAGTTTTCTACATTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTAGACATTCACATACAGTTCAGTTTTTCAGTTTTCTACATTCTA  250

seq1  GTATCAGAGGCATCAGGAGCATTCTTACAAGACCTGTCGGATGCTTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGAGGCATCAGGAGCATTCTTACAAGACCTGTCGGATGCTTGCTG  300

seq1  ACAGTGCAACCCAAGCTGGCCCAGGACTCAGTCTCCTCACCTATTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCAACCCAAGCTGGCCCAGGACTCAGTCTCCTCACCTATTTTGAA  350

seq1  TTCCAATGTAATGCCTTCATGCTGAATGACTCTATCCTCCTTGCTGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGTAATGCCTTCATGCTGAATGACTCTATCCTCCTTGCTGGAGG  400

seq1  GAGATGTTTTTGTGTTGTTTTTCTTGATAAAATGAGGACCAAAATAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTTTTGTGTTGTTTTTCTTGATAAAATGAGGACCAAAATAGTAG  450

seq1  ATGACAACACCACGCCCTGCAGTCTGCCAGCCACCTATAAAAGCCATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAACACCACGCCCTGCAGTCTGCCAGCCACCTATAAAAGCCATATG  500

seq1  TTCATTAAGTTAATAAATTTGACCTAAATCTGTTTCCATACCTGTGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAGTTAATAAATTTGACCTAAATCTGTTTCCATACCTGTGTGAT  550

seq1  AAAATTTCGTCTACAGCTGCCTCTGTGTACAGGGAACATCAACCTAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCGTCTACAGCTGCCTCTGTGTACAGGGAACATCAACCTAACCT  600

seq1  AGCCTATAAGTAAACTGAAACCTGATTTAACAGTATGTTCTTGTAGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATAAGTAAACTGAAACCTGATTTAACAGTATGTTCTTGTAGTTGT  650

seq1  CGGGTTTCTCCAGAGAAGCAGAATTAGTGGAATAAATGTACACCATGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTCTCCAGAGAAGCAGAATTAGTGGAATAAATGTACACCATGTTA  700

seq1  GGGGTATGCTACCCTGGCTCATGCAGTAGAGGTTGGATAGTTTAGCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATGCTACCCTGGCTCATGCAGTAGAGGTTGGATAGTTTAGCAAGT  750

seq1  AGCCCTGAGCTTACCTGAGAGCTTAAGGAACTGCTTCCCCTCTCACGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAGCTTACCTGAGAGCTTAAGGAACTGCTTCCCCTCTCACGAAG  800

seq1  CTAAGCGTCTCAGGAGTCCCAGTGTGATGCTGAAGTCCTAGCATCTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCGTCTCAGGAGTCCCAGTGTGATGCTGAAGTCCTAGCATCTTCCT  850

seq1  AGAGCACTTCTGCTCTTCAGTCCATGG-AAAGCTG-AAGAAACTAGGTGT  898
      ||||||||||||||||||||| ||||| ||||||| ||||||||| ||||
seq2  AGAGCACTTCTGCTCTTCAGTTCATGGAAAAGCTGAAAGAAACTA-GTGT  899

seq1  TGATA-TCAGGGAAATACGGCAGCAG-CAGCAGAACTGATGCACACAGCA  946
      ||||| |||||||||||||||||||| ||||||| |||||||||||||||
seq2  TGATATTCAGGGAAATACGGCAGCAGTCAGCAGATCTGATGCACACAGCA  949

seq1  GCCAGAAGCAAACACAGCTTTTGTCAATGGACCCG-ACCAGCCCAGGTGT  995
      ||||||||||||||||||||||||| ||||||||| | |||| |||||||
seq2  GCCAGAAGCAAACACAGCTTTTGTC-ATGGACCCGAATCAGCTCAGGTGT  998

seq1  GGGTCTCTGCCCCTG-GAAGTGATTTTTCCCATAGGAATCAATCTTAGTT  1044
      |||||| |   |||| ||||||||||||||||||| | ||||||||||||
seq2  GGGTCTTTTGTCCTGTGAAGTGATTTTTCCCATAGAATTCAATCTTAGTT  1048

seq1  GATTCCAG-AGGCAGTCAAGTTG-ACAGTCATGA--CTTACCATTCTTGA  1090
      |||||||| ||||||  |||||| ||  ||||||   |||| ||||||||
seq2  GATTCCAGAAGGCAGGTAAGTTGAACGATCATGAATTTTACAATTCTTGA  1098

seq1  -TTCTGTAAC-AAGTGGCTGAATTGCAACCAGTTATAGTCCA---TGTCC  1135
       ||||||||| ||||||||||||||||||||| |||||  ||   | |||
seq2  TTTCTGTAACAAAGTGGCTGAATTGCAACCAG-TATAGCTCAAGGTTTCC  1147

seq1  ACACATGTTAAATA--TCTCATTATTTAACACCATGTCTGC  1174
      ||||   |||||||  ||||  ||||||||| || ||||||
seq2  ACACGGTTTAAATATCTCTCTATATTTAACA-CAGGTCTGC  1187