BAC Information

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BAC

Clone NameB6Ng01-170P22
Chromosome13 (Build37)
Map Location 36,792,973 - 36,894,215
singlet/doubletdoublet
Overlap geneNrn1
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590, LOC666758
Downstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170P22.bB6Ng01-170P22.g
ACCDH961571DH961572
length1,0071,096
definitionDH961571|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P22, 5' end.DH961572|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,792,973 - 36,793,926)(36,893,126 - 36,894,215)
sequence
gaattcctccatgtaaattaaaaaaaaaaatgtgtttgcagatgaaatga
tcgtatgtgtataaaaccctagattttacacacacacacacacacacaca
cacacacacacacacacacacacaccatctgctaaaaccaaaaggaagtt
gacctgggcacagcagagcccatgtggcagtcccaacactctggaggtgg
aggctgaaagattagtcagaagcttctctaactccagtgcctataggggc
agggaaggagcagaggcaggaggattgctggggatggctggacagcagcc
tagctccgtgttctatgagaggccttgtattaagggtacagtttgataga
gcatgacactggatggccttttctgagttagaccagggttcaccctccat
acacaagtgttcataaaccacacacatactctcacattcacactcacaca
cacaaattaaaaaaaaaattaacacatcaataaattagcaggaaagttca
cacacaaataccagttgtagtttcaataagataacaatggacactctgga
aaggaaattaagaaaacaattgtgtttacaatagcataaaaaccttagac
atctacttagggcagtaaatcccaacttgtacaatgagaattgctgtttc
tcattctgaagtaagtaaaggataaatgggaagatacatatgtccatgca
ccagaggacaatatggttaagaggtcactgccaaccaggttgatacacat
caatgggtagttttaaatacaggaaaatccttccaaaaaatttgtatgga
tgtcagggatcccagaataggtaagatagtctatcctgaattgattttag
aattattcaaagctgctgttatcaaaatagcatggtgcggacatgcagac
atgcacaccaaaagaatagggtagataatccagagatgactgcttaacac
acatggacaggtgatttctgactatataagcaataaggaaagaattttat
caacaaa
gaattcactgaaatactcacaatggtgggaccatgcataatttaacaacc
caggaacccctgctgttaatgtttgggtttctgtcttctcagatttatgt
tttacatcttacatatatttaaattcaaatggcatcacacacactattat
aaaaaaatgcaaacatataaaattaaaaatgagtaaatgccaagcataag
tatggaagagattaaaaattataataaagcataatgtatagcatcctatt
tttgaactaaactcacaacaaaaaggccactctgtgcaaaaataaaagca
ccgaaattgctcgtgaaaaaaattaagatggcataaaataacaactgtag
aaaaatatgagagacagaagtttcactccaaaaggttctggctttcgaat
gtttttccagcaaactcctcagacttttaaggaacagaatcctcaagcta
aacaaacagtttcagagtctaaaacagggaaggacggttaaaccaagtgg
cttacacaagagaattgagacgctgtcagggacgggactagaacacgtga
catgaagaaggacaacaggaacggtgagcagggaggaggaagggggaagg
gcaagaaccaaaatcaagtctgaaaatgccagaaaaaaaaaaagaaaaac
agttactttgtatctaaataaaataaagagttgaaaaagaatgaaatttg
aacatggactgctttattgtccttgtatatatgtgctgttgctattattg
tatgtaaagtagctcagttagggagcactgctagtgtagacacaccttgg
gttccactccagcaaaacacaaaagcccctggtatgttttcaaaagccta
ctttctgtttcattgggagtttctaactctttctgtgacatgactcttga
agactgaggataactcagatataaactttgtttttggaagggtttgtagc
tcagtgagtggagaaggccacttagtgctctgtacacatcggcaacaacc
ccaaaaacacaaccaacaacaacaacttacaacaacaccacatttatatc
aaaacaccaccatactcaccacgacacacaactacacatttcacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_36792973_36793926
seq2: B6Ng01-170P22.b_45_998

seq1  GAATTCCTCCATGTAAATTAAAAAAAAAAATGTGTTTGCAGATGAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCATGTAAATTAAAAAAAAAAATGTGTTTGCAGATGAAATGA  50

seq1  TCGTATGTGTATAAAACCCTAGATTTTACACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATGTGTATAAAACCCTAGATTTTACACACACACACACACACACACA  100

seq1  CACACACACACACACACACACACACCATCTGCTAAAACCAAAAGGAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACCATCTGCTAAAACCAAAAGGAAGTT  150

seq1  GACCTGGGCACAGCAGAGCCCATGTGGCAGTCCCAACACTCTGGAGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGGCACAGCAGAGCCCATGTGGCAGTCCCAACACTCTGGAGGTGG  200

seq1  AGGCTGAAAGATTAGTCAGAAGCTTCTCTAACTCCAGTGCCTATAGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAAGATTAGTCAGAAGCTTCTCTAACTCCAGTGCCTATAGGGGC  250

seq1  AGGGAAGGAGCAGAGGCAGGAGGATTGCTGGGGATGGCTGGACAGCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGAGCAGAGGCAGGAGGATTGCTGGGGATGGCTGGACAGCAGCC  300

seq1  TAGCTCCGTGTTCTATGAGAGGCCTTGTATTAAGGGTACAGTTTGATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCGTGTTCTATGAGAGGCCTTGTATTAAGGGTACAGTTTGATAGA  350

seq1  GCATGACACTGGATGGCCTTTTCTGAGTTAGACCAGGGTTCACCCTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACACTGGATGGCCTTTTCTGAGTTAGACCAGGGTTCACCCTCCAT  400

seq1  ACACAAGTGTTCATAAACCACACACATACTCTCACATTCACACTCACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTGTTCATAAACCACACACATACTCTCACATTCACACTCACACA  450

seq1  CACAAATTAAAAAAAAAATTAACACATCAATAAATTAGCAGGAAAGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTAAAAAAAAAATTAACACATCAATAAATTAGCAGGAAAGTTCA  500

seq1  CACACAAATACCAGTTGTAGTTTCAATAAGATAACAATGGACACTCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAATACCAGTTGTAGTTTCAATAAGATAACAATGGACACTCTGGA  550

seq1  AAGGAAATTAAGAAAACAATTGTGTTTACAATAGCATAAAAACCTTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATTAAGAAAACAATTGTGTTTACAATAGCATAAAAACCTTAGAC  600

seq1  ATCTACTTAGGGCAGTAAATCCCAACTTGTACAATGAGAATTGCTGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTAGGGCAGTAAATCCCAACTTGTACAATGAGAATTGCTGTTTC  650

seq1  TCATTCTGAAGTAAGTAAAGGATAAATGGGAAGATACATATGTCCATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGAAGTAAGTAAAGGATAAATGGGAAGATACATATGTCCATGCA  700

seq1  CCAGAGGACAATATGGTTAAGAGGTCACTGCCAACCAGGTTGATACACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGACAATATGGTTAAGAGGTCACTGCCAACCAGGTTGATACACAT  750

seq1  CAATGGGTAGTTTTAAATACAGGAAAATCCTTCC-AAAAATTTGTATGGA  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAATGGGTAGTTTTAAATACAGGAAAATCCTTCCAAAAAATTTGTATGGA  800

seq1  TGTCAAGGGATCCCAGAATAGGTAAGATAGTCTATCCTGAATTGATTTCA  849
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTC-AGGGATCCCAGAATAGGTAAGATAGTCTATCCTGAATTGATTTTA  849

seq1  GAATTATTCAAAGCTGCTGTTATCAAAATAGCATGGTGCGGACATGCAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTCAAAGCTGCTGTTATCAAAATAGCATGGTGCGGACATGCAGA  899

seq1  CATGCACACCAAAAGAATAGGGTAGATAATCCAGAGATGACTGCTTAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACACCAAAAGAATAGGGTAGATAATCCAGAGATGACTGCTTAACA  949

seq1  CACAT  954
      |||||
seq2  CACAT  954

seq1: chr13_36893126_36894215
seq2: B6Ng01-170P22.g_68_1163 (reverse)

seq1  GTGTG-TATGTGTAGTTGTGTGT-GTGTGTGAGTATGTGGGTGTTT--GT  46
      |||||  |||||||||||||||| ||| |||||||||  |||||||   |
seq2  GTGTGAAATGTGTAGTTGTGTGTCGTG-GTGAGTATGGTGGTGTTTTGAT  49

seq1  ATATATGTGGTTGTTGTTGT-AGTTGTTGTTGTTGGTGGTGTGTGTGGGG  95
      ||| |||||| ||||||||| |||||||||||||||| |||| | |||||
seq2  ATAAATGTGG-TGTTGTTGTAAGTTGTTGTTGTTGGTTGTGTTTTTGGGG  98

seq1  -TGTGTGCGATGTGTACAGAGCACTAAGTG--CCTCTCCACTCACTGAGC  142
       |||   |||||||||||||||||||||||  | ||||||||||||||||
seq2  TTGTTGCCGATGTGTACAGAGCACTAAGTGGCCTTCTCCACTCACTGAGC  148

seq1  TACAAACCCATTCAAAAAACAAGTTTATATCTGAGTTATCCTCAGTCTTC  192
      ||||||||| | ||||||  ||||||||||||||||||||||||||||||
seq2  TACAAACCCTTCCAAAAACAAAGTTTATATCTGAGTTATCCTCAGTCTTC  198

seq1  AAGAGTCATGTCACAGGAAGAGTTAGAAACTCCCAATGAAACAGAAAGTA  242
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGAGTCATGTCACAGAAAGAGTTAGAAACTCCCAATGAAACAGAAAGTA  248

seq1  GGCTTTTGAAAACATACCAGGGGCTTTTGTGTTTTGCTGGAGTGGAACCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTGAAAACATACCAGGGGCTTTTGTGTTTTGCTGGAGTGGAACCC  298

seq1  AAGGTGTGTCTACACTAGCAGTGCTCCCTAACTGAGCTACTTTACATACA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTGTCTACACTAGCAGTGCTCCCTAACTGAGCTACTTTACATACA  348

seq1  ATAATAGCAACAGCACATATATACAAGGACAATAAAGCAGTCCATGTTCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCAACAGCACATATATACAAGGACAATAAAGCAGTCCATGTTCA  398

seq1  AATTTCATTCTTTTTCAACTCTTTATTTTATTTAGATACAAAGTAACTGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTCTTTTTCAACTCTTTATTTTATTTAGATACAAAGTAACTGT  448

seq1  TTTTCTTTTTTTTTTTCTGGCATTTTCAGACTTGATTTTGGTTCTTGCCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTTTTTTCTGGCATTTTCAGACTTGATTTTGGTTCTTGCCC  498

seq1  TTCCCCCTTCCTCCTCCCTGCTCACCGTTCCTGTTGTCCTTCTTCATGTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTTCCTCCTCCCTGCTCACCGTTCCTGTTGTCCTTCTTCATGTC  548

seq1  ACGTGTTCTAGTCCCGTCCCTGACAGCGTCTCAATTCTCTTGTGTAAGCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTTCTAGTCCCGTCCCTGACAGCGTCTCAATTCTCTTGTGTAAGCC  598

seq1  ACTTGGTTTAACCGTCCTTCCCTGTTTTAGACTCTGAAACTGTTTGTTTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTTAACCGTCCTTCCCTGTTTTAGACTCTGAAACTGTTTGTTTA  648

seq1  GCTTGAGGATTCTGTTCCTTAAAAGTCTGAGGAGTTTGCTGGAAAAACAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGGATTCTGTTCCTTAAAAGTCTGAGGAGTTTGCTGGAAAAACAT  698

seq1  TCGAAAGCCAGAACCTTTTGGAGTGAAACTTCTGTCTCTCATATTTTTCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAGCCAGAACCTTTTGGAGTGAAACTTCTGTCTCTCATATTTTTCT  748

seq1  ACAGTTGTTATTTTATGCCATCTTAATTTTTTTCACGAGCAATTTCGGTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTTATTTTATGCCATCTTAATTTTTTTCACGAGCAATTTCGGTG  798

seq1  CTTTTATTTTTGCACAGAGTGGCCTTTTTGTTGTGAGTTTAGTTCAAAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTTGCACAGAGTGGCCTTTTTGTTGTGAGTTTAGTTCAAAAA  848

seq1  TAGGATGCTATACATTATGCTTTATTATAATTTTTAATCTCTTCCATACT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGCTATACATTATGCTTTATTATAATTTTTAATCTCTTCCATACT  898

seq1  TATGCTTGGCATTTACTCATTTTTAATTTTATATGTTTGCATTTTTTTAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTGGCATTTACTCATTTTTAATTTTATATGTTTGCATTTTTTTAT  948

seq1  AATAGTGTGTGTGATGCCATTTGAATTTAAATATATGTAAGATGTAAAAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTGTGTGATGCCATTTGAATTTAAATATATGTAAGATGTAAAAC  998

seq1  ATAAATCTGAGAAGACAGAAACCCAAACATTAACAGCAGGGGTTCCTGGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTGAGAAGACAGAAACCCAAACATTAACAGCAGGGGTTCCTGGG  1048

seq1  TTGTTAAATTATGCATGGTCCCACCATTGTGAGTATTTCAGTGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAATTATGCATGGTCCCACCATTGTGAGTATTTCAGTGAATTC  1096