BAC Information

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BAC

Clone NameB6Ng01-171O09
Chromosome13 (Build37)
Map Location 5,808,860 - 5,810,064
singlet/doubletsinglet
Overlap genenone
Upstream geneEG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171O09.bB6Ng01-171O09.g
ACCGA000661GA000662
length1,1851,135
definitionB6Ng01-171O09.b B6Ng01-171O09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaagtggtagggctgtataatgagataggccctggaaaaatct
aataatataacagtaatttacaagatagatgcaaatgtgcagggacatga
gacatgggagcaagctagaaatcaatagctgtaatgcaagcattggggca
agaatggggaggaaaagaggggctcattacagagtttcaggaatttttct
ttaactcaaacaaaggtcttattaaactttgctcccagaaaacagtaagg
gcttttttggccttaattttaatgaaagacttaataattttttcaattac
ctaattgaatggtagtttcagactaaattgtgctatttaaaatcgtattt
tctatgccaaaaactgggattactttttgtttgtgtacagtattgcatat
atattatgtatagtattgtacatgtgtatatacatgcttgttttcatgtg
tgtgtgcatgcatgtgaaaggcagaggttcacccagggtgtcttcatcaa
tttctctccaccacataaccagagatagcatctctcattcactccagact
ggcagactttgttggtctaggtcgccagcttgtgttgggaatccctgtct
gaacttcatatactctaggattacgcataaaggatgacatagccacccag
aatctatgtgggtgctgggaacccaaactctcaaatgtttctatttgctg
agctggcactatagccctttagtttgcttatttgtttgacttgtgtttat
tgtttaagcataatgttaccaaggataggcactgggtttcttcagcaaat
ttacagtgccactttctaacacacaaactcttttgtgtttaaagcacttg
ttggtattgttccctcttaaaaaatatttcatggtatggttatttccact
tgtagaaaagttttattataattatttttccttatttactttttatatct
aagatttccagaggatttttctattctagccttactaatgctcctctaca
tcatcttgacctcgatgatgtactaagatgtctagatttactttttaatt
tatttttgctggtgtacatgtgagtgtgtggttctggtggtaagaacgga
agacacgaactgaacgatcgaacgacggacagacgtggctgtttaagcta
cttctaggaaatggatccttggatcacaattcatg

gaattccacagaatcaggaacaagactaagttgtccactccttcttaggt
attcaacacatttagtgaagtttgggctaaagaaatacaaaaactgaagg
agataaaggaggtagaaattgtaaaggaagaagtcaaagtatcattattt
tgcagatgatatgatggtatacataaatgaccctaaaaaattccaccagg
gaaattctacagccaataaacactttcagcaaagtggctagataaaagag
cagctttaaaaaaaaatcaatagccctcctatatacaaatggcaaatgga
ctgagaaagaaatcaaggaaagaatactcttcaaaattgcctcaaataat
atatgatatcttgaggtaattttaaccaagcaagtaaaagacttcatatc
gttgaagaaagaaattgaagagcatacaaaaagatggaaagacttcccat
atttatcagcagaattaatatagcaaaagtggtcatcctaccaaaagcaa
tctacagactcaatgcaatccccgtaaaactcctaatagttctttacagc
ccttgaaaagacaatgttctctccctgtgggggaaaacaaaaaacaggat
agctaaaaacaagcctaaacaatataagaactgctagaggtatcaccatc
cctaatttcaagttgtagtacagatgtagtaacaaaaacttcattgtatt
ggcataaaaacagacatagtgatcaatgaaatcgaatttgaagatcaaaa
tataaatctaaacaagggtggatacttgattttttttttaataaaaaatc
tttaaaagacagtatcttcaacaaatggtgctgatctaactggatggctg
gaggtacaagaattcacatagattcatatctatcagcctgcacaaacaca
gtccaagaggatcaaagactcatataaaccagatacattgaccaatagaa
aacaagtggagatttaccttgacacagaagaaaaattttctaaaagaaga
cgtagtgcagaacacctagatcaactataatgagaactcatgaataattt
cctgttgcaaggtaacccatcaatggcattatcagcctacgaatgaattt
tgcaagtccaccaaggactatttctcaatatttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5808860_5810064
seq2: B6Ng01-171O09.b_35_1219 (reverse)

seq1  CATGAATTTTGTGATCCAGGAATACCTATTACCTAGGAAGTTCTAAGCTA  50
      ||||||  |||||||||| | ||  | ||| |||| |||||    |||| 
seq2  CATGAA--TTGTGATCCAAGGAT--CCATTTCCTA-GAAGT----AGCTT  41

seq1  TAACAGCACAC-TCTGTCTGTCTGTCTGTCTGTCTGT--CTGTCTATCTG  97
       |||||| ||| |||||| |||  ||  ||  || ||   ||||| || |
seq2  AAACAGC-CACGTCTGTCCGTCGTTCGATCGTTCAGTTCGTGTCT-TCCG  89

seq1  TCTATAACACACAGACACACACACTCACATGTACACACAGCAAAAATAAA  147
      |   || ||| ||||  ||||||||||||||||||| |||||||||||||
seq2  TTCTTACCAC-CAGAACCACACACTCACATGTACAC-CAGCAAAAATAAA  137

seq1  TAAAAAAGTTAAAATCTTAGACATCTTTAGTACATCATCGA-GTCAAGAT  196
      | |||||||  ||||| |||||||| ||||||||||||||| ||||||||
seq2  TTAAAAAGT--AAATC-TAGACATC-TTAGTACATCATCGAGGTCAAGAT  183

seq1  GATGTAGAGGAAGCATTTAGTAAGGCTAGAATAGAAAATTCTTCTTGGAA  246
      |||||||||| |||| |||||||||||||||||||||| || ||| |   
seq2  GATGTAGAGG-AGCA-TTAGTAAGGCTAGAATAGAAAAATCCTCTGG---  228

seq1  AAATCTTAGATATAAAAAGTAAATAAAGGAAAAATAATTATAATAAAACT  296
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAATCTTAGATATAAAAAGTAAAT-AAGGAAAAATAATTATAATAAAACT  277

seq1  TTTCTACAAGTGGAAATAACCATACCATGAAATATTTTTTAAGAGGGAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAAGTGGAAATAACCATACCATGAAATATTTTTTAAGAGGGAAC  327

seq1  AATACCAACAAGTGCTTTAAAACACAAAAGAGTTGTGTGT-TTAGAAAGT  395
      |||||||||||||||||| ||||||||||||||| ||||| |||||||||
seq2  AATACCAACAAGTGCTTT-AAACACAAAAGAGTT-TGTGTGTTAGAAAGT  375

seq1  GGCACTGTAAATTTGCTGAAGAAACCCAGTGCCTATCCTTGGTAACATTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTAAATTTGCTGAAGAAACCCAGTGCCTATCCTTGGTAACATTA  425

seq1  TGCTTAAACAATAAACACAAGTCAAACAAATAAGCAAACTAAAGGGCTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAACAATAAACACAAGTCAAACAAATAAGCAAACTAAAGGGCTAT  475

seq1  AGTGCCAGCTCAGCAAATAGAAACATTTGAGAGTTTGGGTTCCCAGCACC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGCTCAGCAAATAGAAACATTTGAGAGTTTGGGTTCCCAGCACC  525

seq1  CACATAGATTCTGGGTGGCTATGTCATCCTTTATGCGTAATCCTAGAGTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGATTCTGGGTGGCTATGTCATCCTTTATGCGTAATCCTAGAGTA  575

seq1  TATGAAGTTCAGACAGGGATTCCCAACACAAGCTGGCGACCTAGACCAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTTCAGACAGGGATTCCCAACACAAGCTGGCGACCTAGACCAAC  625

seq1  AAAGTCTGCCAGTCTGGAGTGAATGAGAGATGCTATCTCTGGTTATGTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGCCAGTCTGGAGTGAATGAGAGATGCTATCTCTGGTTATGTGG  675

seq1  TGGAGAGAAATTGATGAAGACACCCTGGGTGAACCTCTGCCTTTCACATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAAATTGATGAAGACACCCTGGGTGAACCTCTGCCTTTCACATG  725

seq1  CATGCACACACACATGAAAACAAGCATGTATATACACATGTACAATACTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACACACACATGAAAACAAGCATGTATATACACATGTACAATACTA  775

seq1  TACATAATATATATGCAATACTGTACACAAACAAAAAGTAATCCCAGTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATATATATGCAATACTGTACACAAACAAAAAGTAATCCCAGTTT  825

seq1  TTGGCATAGAAAATACGATTTTAAATAGCACAATTTAGTCTGAAACTACC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATAGAAAATACGATTTTAAATAGCACAATTTAGTCTGAAACTACC  875

seq1  ATTCAATTAGGTAATTGAAAAAATTATTAAGTCTTTCATTAAAATTAAGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTAGGTAATTGAAAAAATTATTAAGTCTTTCATTAAAATTAAGG  925

seq1  CCAAAAAAGCCCTTACTGTTTTCTGGGAGCAAAGTTTAATAAGACCTTTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAGCCCTTACTGTTTTCTGGGAGCAAAGTTTAATAAGACCTTTG  975

seq1  TTTGAGTTAAAGAAAAATTCCTGAAACTCTGTAATGAGCCCCTCTTTTCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTAAAGAAAAATTCCTGAAACTCTGTAATGAGCCCCTCTTTTCC  1025

seq1  TCCCCATTCTTGCCCCAATGCTTGCATTACAGCTATTGATTTCTAGCTTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTCTTGCCCCAATGCTTGCATTACAGCTATTGATTTCTAGCTTG  1075

seq1  CTCCCATGTCTCATGTCCCTGCACATTTGCATCTATCTTGTAAATTACTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGTCTCATGTCCCTGCACATTTGCATCTATCTTGTAAATTACTG  1125

seq1  TTATATTATTAGATTTTTCCAGGGCCTATCTCATTATACAGCCCTACCAC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTATTAGATTTTTCCAGGGCCTATCTCATTATACAGCCCTACCAC  1175

seq1  TTGAGAATTC  1205
      ||||||||||
seq2  TTGAGAATTC  1185


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