BAC Information

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BAC

Clone NameB6Ng01-172A16
Chromosome13 (Build37)
Map Location 77,051,535 - 77,244,852
singlet/doubletdoublet
Overlap geneMctp1, EG666607, Ankrd32
Upstream geneRhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, LOC666603
Downstream gene2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172A16.bB6Ng01-172A16.g
ACCGA000765GA000766
length8051,002
definitionB6Ng01-172A16.b B6Ng01-172A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,051,535 - 77,052,339)(77,243,853 - 77,244,852)
sequence
gaattcattgtttttaatagctgagtagtactccattatgtaaatgtacg
acattttctgtatccattcctctgttgaggaacatctgggttctttccag
cttcttgctattataaataaggctgctatgaacatagttgaacatgtgtc
cttattacaagttggaacatcttctgggtatatgcccaagagtgggattg
ctggatcttccagtagaactatgtccaatttccctgaaacccacctctag
ctccaccaaagtgtgtttaccactgaaggacagctgaaagcattgcctcc
ataaagggctggagccttagacagcaactggagtaccaggtctccagagc
cactcagaccttctcaggggcagaaagaacacagcacttcatgctgcttc
aatgtcttactctaaagtgattttatttatttttttcctcatgtaagcta
atttaaaaaaacaaaaaacaaacaaacaaaaaaccctgaacttctaaagg
cctgttttcctacctttgtcttttttaattgaggaatgaaatgccagaga
aaagagcaaaggatactgataggtttctcaggtctcaggatgaattgctt
agtcctatttagcctttctcattgtttctggatgaaacactgtgcctcat
ccttttcctaatcaccaaattgtattatgataaaggaggcgagatggaga
ccacttgctcactcctggcctggggtttcttctattacactctgctccta
actatagcttgtagtaggtggtcttagaagagaaggggaaggggttgagg
gaggg
gaattcacttgaaaaatcagacaacagaaaaaaaaaaaaaaaaaaaaaaa
aacaggaagactgcagctcttgtgcagtatttcagacattagtgataaac
aacagcaaaagtaatactagttctagtgtagaaaagcaaatgttcatttc
atgctatgtttaataggtttattttgttagtttatcaagtcaaaactcag
tagttactaagtctaaactgaaagatttttatgtttaaattgaaactcac
tgtattcatggtaggaaatttgaaagttttttaattctgcagtttcttat
gacatgacatgattggctaaaactttatagaattaaaatactttatcagt
tttgctccttgtcttcctgaatacagtgatatttgtgtgcccatttagac
ttccttctgtgaccatgtttgcaagtttcataagagaatttttaaattga
tttgtctgatttgtgcaatataacttcatatgaacagtgtttacatgtat
caaaagagtgtaaactacggaagttaccacagttgattctgtttttttat
taaacagaaaaatatatgtttttctaaaagataaagaaatcattaaaata
aatatacgagaatatacatgcaactaacaaatttttcatatctaaaaata
gtttgtaatactctatcctcagaattaaattagtaagtacatctggtaag
ttactacttataaaatgtggcaaactaaagcatttgttttctggtctgtt
ttgtataagaacgatgtattaaaactcactttatattttaagtttaatgt
catgtgtgttttataaacctactttccctgaaattttttttattatgact
tctattagttgtggtgaagctatattatatataaccgagagtatatttat
ttttatatacatgcagaataaaatggaaaatcataataaaatgttagtga
tagatttgttctgagtgaacatccacaaaaaaaatttcaaagacttcaga
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_77051535_77052339
seq2: B6Ng01-172A16.b_45_849

seq1  GAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTATGTAAATGTACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTATGTAAATGTACG  50

seq1  ACATTTTCTGTATCCATTCCTCTGTTGAGGAACATCTGGGTTCTTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTGTATCCATTCCTCTGTTGAGGAACATCTGGGTTCTTTCCAG  100

seq1  CTTCTTGCTATTATAAATAAGGCTGCTATGAACATAGTTGAACATGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCTATTATAAATAAGGCTGCTATGAACATAGTTGAACATGTGTC  150

seq1  CTTATTACAAGTTGGAACATCTTCTGGGTATATGCCCAAGAGTGGGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTACAAGTTGGAACATCTTCTGGGTATATGCCCAAGAGTGGGATTG  200

seq1  CTGGATCTTCCAGTAGAACTATGTCCAATTTCCCTGAAACCCACCTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCTTCCAGTAGAACTATGTCCAATTTCCCTGAAACCCACCTCTAG  250

seq1  CTCCACCAAAGTGTGTTTACCACTGAAGGACAGCTGAAAGCATTGCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCAAAGTGTGTTTACCACTGAAGGACAGCTGAAAGCATTGCCTCC  300

seq1  ATAAAGGGCTGGAGCCTTAGACAGCAACTGGAGTACCAGGTCTCCAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGCTGGAGCCTTAGACAGCAACTGGAGTACCAGGTCTCCAGAGC  350

seq1  CACTCAGACCTTCTCAGGGGCAGAAAGAACACAGCACTTCATGCTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGACCTTCTCAGGGGCAGAAAGAACACAGCACTTCATGCTGCTTC  400

seq1  AATGTCTTACTCTAAAGTGATTTTATTTATTTTTTTCCTCATGTAAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTACTCTAAAGTGATTTTATTTATTTTTTTCCTCATGTAAGCTA  450

seq1  ATTTAAAAAAACAAAAAACAAACAAACAAAAAACCCTGAACTTCTAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAAACAAAAAACAAACAAACAAAAAACCCTGAACTTCTAAAGG  500

seq1  CCTGTTTTCCTACCTTTGTCTTTTTTAATTGAGGAATGAAATGCCAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTCCTACCTTTGTCTTTTTTAATTGAGGAATGAAATGCCAGAGA  550

seq1  AAAGAGCAAAGGATACTGATAGGTTTCTCAGGTCTCAGGATGAATTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAAAGGATACTGATAGGTTTCTCAGGTCTCAGGATGAATTGCTT  600

seq1  AGTCCTATTTAGCCTTTCTCATTGTTTCTGGATGAAACACTGTGCCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTATTTAGCCTTTCTCATTGTTTCTGGATGAAACACTGTGCCTCAT  650

seq1  CCTTTTCCTAATCACCAAATTGTATTATGATAAAGGAGGCGAGATGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCTAATCACCAAATTGTATTATGATAAAGGAGGCGAGATGGAGA  700

seq1  CCACTTGCTCACTCCTGGCCTGGGGTTTCTTCTATTACACTCTGCTCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGCTCACTCCTGGCCTGGGGTTTCTTCTATTACACTCTGCTCCTA  750

seq1  ACTATAGCTTGTAGTAGGTGGTCTTAGAAGAGAAGGGGAAGGGGTTGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGCTTGTAGTAGGTGGTCTTAGAAGAGAAGGGGAAGGGGTTGAGG  800

seq1  GAGGG  805
      |||||
seq2  GAGGG  805

seq1: chr13_77243853_77244852
seq2: B6Ng01-172A16.g_65_1066 (reverse)

seq1  TTTCTGAAGTCTTTGAATTTTTTTTTGT-GATGTTCACTCAGAACAAATC  49
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  TTTCTGAAGTCTTTGAAATTTTTTTTGTGGATGTTCACTCAGAACAAATC  50

seq1  TATCACTAACATTTTTATTATGATTTTCCATTTTATTCTGCATGTATATA  99
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATCACTAACA-TTTTATTATGATTTTCCATTTTATTCTGCATGTATATA  99

seq1  AAAATAATTATACTCTCGGTTATATATAATATAGCTTCACCACAACTAAT  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATATACTCTCGGTTATATATAATATAGCTTCACCACAACTAAT  149

seq1  AGAAGTCATAAT-AAAAAAATTTCA-GGAAAGTAGGTTTATAAAACACAC  197
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  AGAAGTCATAATAAAAAAAATTTCAGGGAAAGTAGGTTTATAAAACACAC  199

seq1  ATGACATTAAACTTAAAATATAAAGTGAGTTTTAATACATCGTTCTTATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTAAACTTAAAATATAAAGTGAGTTTTAATACATCGTTCTTATA  249

seq1  CAAAACAGACCAGAAAACAAATGCTTTAGTTTGCCACATTTTATAAGTAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGACCAGAAAACAAATGCTTTAGTTTGCCACATTTTATAAGTAG  299

seq1  TAACTTACCAGATGTACTTACTAATTTAATTCTGAGGATAGAGTATTACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTACCAGATGTACTTACTAATTTAATTCTGAGGATAGAGTATTACA  349

seq1  AACTATTTTTAGATATGAAAAATTTGTTAGTTGCATGTATATTCTCGTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTTAGATATGAAAAATTTGTTAGTTGCATGTATATTCTCGTAT  399

seq1  ATTTATTTTAATGATTTCTTTATCTTTTAGAAAAACATATATTTTTCTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTAATGATTTCTTTATCTTTTAGAAAAACATATATTTTTCTGT  449

seq1  TTAATAAAAAAACAGAATCAACTGTGGTAACTTCCGTAGTTTACACTCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAAAAACAGAATCAACTGTGGTAACTTCCGTAGTTTACACTCTT  499

seq1  TTGATACATGTAAACACTGTTCATATGAAGTTATATTGCACAAATCAGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACATGTAAACACTGTTCATATGAAGTTATATTGCACAAATCAGAC  549

seq1  AAATCAATTTAAAAATTCTCTTATGAAACTTGCAAACATGGTCACAGAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATTTAAAAATTCTCTTATGAAACTTGCAAACATGGTCACAGAAG  599

seq1  GAAGTCTAAATGGGCACACAAATATCACTGTATTCAGGAAGACAAGGAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTAAATGGGCACACAAATATCACTGTATTCAGGAAGACAAGGAGC  649

seq1  AAAACTGATAAAGTATTTTAATTCTATAAAGTTTTAGCCAATCATGTCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGATAAAGTATTTTAATTCTATAAAGTTTTAGCCAATCATGTCAT  699

seq1  GTCATAAGAAACTGCAGAATTAAAAAACTTTCAAATTTCCTACCATGAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAGAAACTGCAGAATTAAAAAACTTTCAAATTTCCTACCATGAAT  749

seq1  ACAGTGAGTTTCAATTTAAACATAAAAATCTTTCAGTTTAGACTTAGTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGTTTCAATTTAAACATAAAAATCTTTCAGTTTAGACTTAGTAA  799

seq1  CTACTGAGTTTTGACTTGATAAACTAACAAAATAAACCTATTAAACATAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAGTTTTGACTTGATAAACTAACAAAATAAACCTATTAAACATAG  849

seq1  CATGAAATGAACATTTGCTTTTCTACACTAGAACTAGTATTACTTTTGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGAACATTTGCTTTTCTACACTAGAACTAGTATTACTTTTGCT  899

seq1  GTTGTTTATCACTAATGTCTGAAATACTGCACAAGAGCTGCAGTCTTCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTATCACTAATGTCTGAAATACTGCACAAGAGCTGCAGTCTTCCT  949

seq1  GTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTGTCTGATTTTTCAAGTGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTGTCTGATTTTTCAAGTGAA  999

seq1  TTC  1000
      |||
seq2  TTC  1002