BAC Information

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BAC

Clone NameB6Ng01-172L22
Chromosome13 (Build37)
Map Location 68,628,873 - 68,747,510
singlet/doubletdoublet
Overlap geneLOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik
Upstream geneZfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272
Downstream geneAdcy2, LOC666205, LOC218332, Pols, A530095I07Rik, Srd5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172L22.bB6Ng01-172L22.g
ACCGA001282GA001283
length1,1651,182
definitionB6Ng01-172L22.b B6Ng01-172L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,628,873 - 68,630,055)(68,746,369 - 68,747,510)
sequence
gaattctttgtctttataggttaaagtgctctgttctcttctgctgtgat
gggcctccggtcactgcaaagaagacattagagatggtaggatggaatta
cccaactatgcaaatgacttaaacatcggattccaattttgtaggtgttt
aaaattagaatttaaaaaaaaaatggtaatgttcttgggtatatcaaaga
tagccaagaatcagatttaatagtgttgaggggtaaccacgcttggcaga
agcagaaagctatagaaaaagaaagagagatcctggggtacaagttagtg
tcttctgtgacaggacaacagcctcttactatacagatgtgtccgtgtct
ttattattgaacctcaattgggtcccctgaaagccctgtaatatttgggg
aggcctgactttccaacagcttcaaatcttgctatttgtgctctctcttc
tatttctttgatactatggtaacagcatgaatgcataccaactgtccaca
agaaataatcaagaaactctgcacaacccaggccggctttcagactcctt
ggttcaggagttaagtaagacattctgggagaaattgccttgaacaaaaa
agtgtgggacagaggaccccgggtcccaaggttcatcactgggaaaatga
aacactgaaagttttggcttctcactcaatttacattatcaccattttcc
aaagtacactgattcactcaaaaaggccaggtggccaagaacaaaaaaaa
tctctgtccttcatgggctcatcatcatagtcccaacgtctcacctcaga
atgtggtaagtggaactgcggaatgacttgctaactcacttagaatttaa
aaataaaccctgagcgaagaaatgtgggacaatttcttccaggctgagca
cagctattattcttgagtgtgggataaccacacatgcagtaccttatgtc
ctgtattctcaattgtaattgccatgtgactgtgccaggctagcagatat
gcaatgaaatgagttctttctcactgcccccaaaaaaaaagacaggcacc
ctggggagttcatgtagcccccactgcttagttgatgagtgagagcatgg
attttggtatataagaccctgtgcctagagctgtgaaggactactggcag
atgtagcatgatgga
gaattcaggtcccttggaagaacagcaagcacttttaactactgagtcat
ctctctcttaagcaatcggatggtagttaggcatatggtctggtctcagt
tttctgtctgcaagccctcctgccctggctatccctgtgctgtctgtagg
gtagaaggaggtcagccacagctgacagcatgaaggacgaacccttgtga
tcaagttgttctcttctaaccgctgaggaccgtatgcaaaagtaggcgtg
ggcggtcttccccatcccacgcccaacagtgctcccactgggcgtgtagt
ctgctcaggtaatgggagccgcagaagaggggaagcaccaacagtaagga
aacaaactgccaggaagggaacagtaaggaaacaaactgtgctgtgtttc
ttgcctcgagctttcggccaggccacccctccagagtggggtgggttctg
ctagggggcggagcttatctgagaaggagacccaatgacagaagaacaga
ttcaaggagaaagggggcttgtaatcactgttacagatgctccacgtcac
agaaacctattgcaatatgcaacttcccaggagaaacgaaaaaacaaagc
aaaacaaaacaaaacagtctattggttttcattttaacgaggtctcctaa
aactctgtaaataggagcagctaagagtctatgctgcctcctcccaattc
cagggcgttgcgagcgcctgggccatgttgatctggattaggaagctcac
tgcttctgggcagggctgatgaaaacccaggagctcccagccccacccta
ccagcccgccccatcctacccttgccgcgtgtgtgctgcatattcagaat
gtttccagaggggggaaaaaggatgaattttttcttactgctgaagaata
agactaaaagggaaaaaaattacctagccagaacggggcagccttcatca
gagcaaaacacctaatcccgtcttccttgtggtctgagctgagtcgaagt
tggtgtcttccatttacagagctttccatctttttgtttcttgaattcct
ttggtgctttgaagccaggatgattttaataaaaaaccattcggggaacc
tgagaatgtcaattcacaacacgaaactttggtggccgtgcacaattaaa
atccctctcagatttcacctggccatttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_68628873_68630055
seq2: B6Ng01-172L22.b_42_1206

seq1  GAATTCTTTGTCTTTATAGGTTAAAGTGCTCTGTTCTCTTCTGCTGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCTTTATAGGTTAAAGTGCTCTGTTCTCTTCTGCTGTGAT  50

seq1  GGGCCTCCGGTCACTGCAAAGAAGACATTAGAGATGGTAGGATGGAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCCGGTCACTGCAAAGAAGACATTAGAGATGGTAGGATGGAATTA  100

seq1  CCCAACTATGCAAATGACTTAAACATCGGATTCCAATTTTGTAGGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTATGCAAATGACTTAAACATCGGATTCCAATTTTGTAGGTGTTT  150

seq1  AAAATTAGAATTTAAAAAAAAAATGGTAATGTTCTTGGGTATATCAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGAATTTAAAAAAAAAATGGTAATGTTCTTGGGTATATCAAAGA  200

seq1  TAGCCAAGAATCAGATTTAATAGTGTTGAGGGGTAACCACGCTTGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAGAATCAGATTTAATAGTGTTGAGGGGTAACCACGCTTGGCAGA  250

seq1  AGCAGAAAGCTATAGAAAAAGAAAGAGAGATCCTGGGGTACAAGTTAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAGCTATAGAAAAAGAAAGAGAGATCCTGGGGTACAAGTTAGTG  300

seq1  TCTTCTGTGACAGGACAACAGCCTCTTACTATACAGATGTGTCCGTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTGACAGGACAACAGCCTCTTACTATACAGATGTGTCCGTGTCT  350

seq1  TTATTATTGAACCTCAATTGGGTCCCCTGAAAGCCCTGTAATATTTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTGAACCTCAATTGGGTCCCCTGAAAGCCCTGTAATATTTGGGG  400

seq1  AGGCCTGACTTTCCAACAGCTTCAAATCTTGCTATTTGTGCTCTCTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGACTTTCCAACAGCTTCAAATCTTGCTATTTGTGCTCTCTCTTC  450

seq1  TATTTCTTTGATACTATGGTAACAGCATGAATGCATACCAACTGTCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTGATACTATGGTAACAGCATGAATGCATACCAACTGTCCACA  500

seq1  AGAAATAATCAAGAAACTCTGCACAACCCAGGCCGGCTTTCAGACTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATCAAGAAACTCTGCACAACCCAGGCCGGCTTTCAGACTCCTT  550

seq1  GGTTCAGGAGTTAAGTAAGACATTCTGGGAGAAATTGCCTTGAACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGGAGTTAAGTAAGACATTCTGGGAGAAATTGCCTTGAACAAAAA  600

seq1  AGTGTGGGACAGAGGACCCCGGGTCCCAAGGTTCATCACTGGGAAAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGACAGAGGACCCCGGGTCCCAAGGTTCATCACTGGGAAAATGA  650

seq1  AACACTGAAAGTTTTGGCTTCTCACTCAATTTACATTATCACCATTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAAAGTTTTGGCTTCTCACTCAATTTACATTATCACCATTTTCC  700

seq1  AAAGTACACTGATTCACTCAAAAAGGCCAGGTGGCCAAGAACAAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACACTGATTCACTCAAAAAGGCCAGGTGGCCAAGAACAAAAAAAA  750

seq1  TCTCTGTCCTTCATGGGCTCATCATCATAGTCCCAACGTCTCACCTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCCTTCATGGGCTCATCATCATAGTCCCAACGTCTCACCTCAGA  800

seq1  ATGTGGTAAGTGGAACTGCGGAATGACTTGCTAACTCACTTAGAATTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTAAGTGGAACTGCGGAATGACTTGCTAACTCACTTAGAATTTAA  850

seq1  AAATAAACCCTGAGCGAAGAAATGT-GGACAATTTCTTCCAGGCTGAGCA  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAATAAACCCTGAGCGAAGAAATGTGGGACAATTTCTTCCAGGCTGAGCA  900

seq1  CAGCTATTATTCTTGAGTGTGGGATAACCACACATGCAGTACCTTATGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGCTATTATTCTTGAGTGTGGGATAACCACACATGCAGTACCTTATGT-  949

seq1  CCTGTATTCTCAATTGTTAATTGCCATGTTGACTGTGCCAGGCTAGCAGG  999
      |||||||||||||||| ||||||||||| ||||||||||||||||||| |
seq2  CCTGTATTCTCAATTG-TAATTGCCATG-TGACTGTGCCAGGCTAGCA-G  996

seq1  ATATGCAAATGAAATGAGGTCCTTTCCTCACCTGCCCCC-CAAAAAAAGA  1048
      |||||| ||||||||||| ||  || |||| ||||||||  |||||||||
seq2  ATATGC-AATGAAATGAGTTC--TTTCTCA-CTGCCCCCAAAAAAAAAGA  1042

seq1  CAAGCCACCCTGGGGAAGGTCATGTAAGCCCCCACTGCCTAGTGGATGAG  1098
      | || |||||||||| || |||||| |||||||||||| |||| ||||||
seq2  C-AGGCACCCTGGGG-AGTTCATGT-AGCCCCCACTGCTTAGTTGATGAG  1089

seq1  TGAAGAGCATGGATTTTTGTATAATAAAGACCTGGTGGCTAGAGCTGGGT  1148
      || |||||||||||||| |||||   ||||||  ||| |||||||||   
seq2  TG-AGAGCATGGATTTTGGTATA--TAAGACCCTGTGCCTAGAGCTG---  1133

seq1  AGAAGGACTAACAGGCAGGGATGTAGCAGGATGGA  1183
       |||||||| || ||||  ||||||||| ||||||
seq2  TGAAGGACT-ACTGGCA--GATGTAGCATGATGGA  1165

seq1: chr13_68746369_68747510
seq2: B6Ng01-172L22.g_65_1246 (reverse)

seq1  AGAGAAA--GGCAGGTG-AATCTGAGA--GATTTTAATTGTGCA---GCA  42
      |||||||  | |||||| |||||||||  |||||||||||||||    ||
seq2  AGAGAAATGGCCAGGTGAAATCTGAGAGGGATTTTAATTGTGCACGGCCA  50

seq1  CC-AAGTCT-GTGTTGTGA--TAGCA-TCTCAG---TCCCGATTGG-TTT  83
      || |||| | |||||||||  |  || ||||||    ||||| ||| |||
seq2  CCAAAGTTTCGTGTTGTGAATTGACATTCTCAGGTTCCCCGAATGGTTTT  100

seq1  TTATTAAAATCAT-CTTGCTTC-AAGCCACAAAGGAATACAAGAA--CAA  129
      ||||||||||||| || ||||| ||||  ||||||||| ||||||   ||
seq2  TTATTAAAATCATCCTGGCTTCAAAGCACCAAAGGAATTCAAGAAACAAA  150

seq1  AAGAT-GAAAGCTCTGT-AATGGAAGACAC--ACTTCGGCTCAGCTCAGA  175
      ||||| ||||||||||| ||||||||||||  |||||| |||||||||||
seq2  AAGATGGAAAGCTCTGTAAATGGAAGACACCAACTTCGACTCAGCTCAGA  200

seq1  -CACA--GGAGAC-GGAT--AGTGTTTTGCTCTG-TG-AGGCTGCCC--G  215
       ||||  | |||| ||||   ||||||||||||| || |||||||||   
seq2  CCACAAGGAAGACGGGATTAGGTGTTTTGCTCTGATGAAGGCTGCCCCGT  250

seq1  TCT-GCTA-GTAATTTTTTT-CCTTTTAGTCTTATTCTTCAGCAGTA--G  260
      ||| |||| ||||||||||| ||||||||||||||||||||||||||   
seq2  TCTGGCTAGGTAATTTTTTTCCCTTTTAGTCTTATTCTTCAGCAGTAAGA  300

seq1  AAAAATTCATCCTTTTTCCCCCCTCTGG-AACATTCTGAATATGCAGCAC  309
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAAATTCATCCTTTTTCCCCCCTCTGGAAACATTCTGAATATGCAGCAC  350

seq1  ACACGCGGCAAGGGTAGGATGGGGCGGGCTGGTAGGGTGGGGCTGGGAGC  359
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCGGCAAGGGTAGGATGGGGCGGGCTGGTAGGGTGGGGCTGGGAGC  400

seq1  TCCTGGGTTTTCATCAGCCCTTGCCCAGAAGCAGTGAGCTTCCTAATCCA  409
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCTGGGTTTTCATCAGCCC-TGCCCAGAAGCAGTGAGCTTCCTAATCCA  449

seq1  GATCAACATGGCCCAGGCGCTCGCAACGCCCTGGAATTGGGAGGAGGCAG  459
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACATGGCCCAGGCGCTCGCAACGCCCTGGAATTGGGAGGAGGCAG  499

seq1  CATAGACTCTTAGCTGCTCCTATTTACAGAGTTTTAGGAGACCTCGTTAA  509
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACTCTTAGCTGCTCCTATTTACAGAGTTTTAGGAGACCTCGTTAA  549

seq1  AATGAAAACCAATAGACTGTTTTGTTTTGTTTTGCTTTGTTTTTTCGTTT  559
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAACCAATAGACTGTTTTGTTTTGTTTTGCTTTGTTTTTTCGTTT  599

seq1  CTCCTGGGAAGTTGCATATTGCAATAGGTTTCTGTGACGTGGAGCATCTG  609
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGAAGTTGCATATTGCAATAGGTTTCTGTGACGTGGAGCATCTG  649

seq1  TAACAGTGATTACAAGCCCCCTTTCTCCTTGAATCTGTTCTTCTGTCATT  659
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGATTACAAGCCCCCTTTCTCCTTGAATCTGTTCTTCTGTCATT  699

seq1  GGGTCTCCTTCTCAGATAAGCTCCGCCCCCTAGCAGAACCCACCCCACTC  709
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCCTTCTCAGATAAGCTCCGCCCCCTAGCAGAACCCACCCCACTC  749

seq1  TGGAGGGGTGGCCTGGCCGAAAGCTCGAGGCAAGAAACACAGCACAGTTT  759
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGTGGCCTGGCCGAAAGCTCGAGGCAAGAAACACAGCACAGTTT  799

seq1  GTTTCCTTACTGTTCCCTTCCTGGCAGTTTGTTTCCTTACTGTTGGTGCT  809
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTACTGTTCCCTTCCTGGCAGTTTGTTTCCTTACTGTTGGTGCT  849

seq1  TCCCCTCTTCTGCGGCTCCCATTACCTGAGCAGACTACACGCCCAGTGGG  859
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTTCTGCGGCTCCCATTACCTGAGCAGACTACACGCCCAGTGGG  899

seq1  AGCACTGTTGGGCGTGGGATGGGGAAGACCGCCCACGCCTACTTTTGCAT  909
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTTGGGCGTGGGATGGGGAAGACCGCCCACGCCTACTTTTGCAT  949

seq1  ACGGTCCTCAGCGGTTAGAAGAGAACAACTTGATCACAAGGGTTCGTCCT  959
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCCTCAGCGGTTAGAAGAGAACAACTTGATCACAAGGGTTCGTCCT  999

seq1  TCATGCTGTCAGCTGTGGCTGACCTCCTTCTACCCTACAGACAGCACAGG  1009
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGTCAGCTGTGGCTGACCTCCTTCTACCCTACAGACAGCACAGG  1049

seq1  GATAGCCAGGGCAGGAGGGCTTGCAGACAGAAAACTGAGACCAGACCATA  1059
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCAGGGCAGGAGGGCTTGCAGACAGAAAACTGAGACCAGACCATA  1099

seq1  TGCCTAACTACCATCCGATTGCTTAAGAGAGAGATGACTCAGTAGTTAAA  1109
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAACTACCATCCGATTGCTTAAGAGAGAGATGACTCAGTAGTTAAA  1149

seq1  AGTGCTTGCTGTTCTTCCAAGGGACCTGAATTC  1142
      |||||||||||||||||||||||||||||||||
seq2  AGTGCTTGCTGTTCTTCCAAGGGACCTGAATTC  1182