BAC Information

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BAC

Clone NameB6Ng01-173H16
Chromosome13 (Build37)
Map Location 71,364,779 - 71,365,887
singlet/doubletsinglet
Overlap genenone
Upstream gene4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC627230, LOC100042360, Irx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173H16.bB6Ng01-173H16.g
ACCGA001814GA001815
length1,1121,182
definitionB6Ng01-173H16.b B6Ng01-173H16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacagcaatggagatgctgcaagtttgttggaacaaagagcacag
ggcttaggtgcgaagcagagccagtctggaactctctcctatatttacag
gtagactaggtgttcaaaaatgtataagacatgcctaaacaacaccacta
gtggagaactcagagtataaacaaatgagacttggggacattttattcaa
accttaatgggttagtgtgtgaaggtgattttgggcattgctgactgggt
cttcaaagcaaatgaacaagggaagtctttgtcaaagactcaatcctgtg
gaattagcatagtaacaacactgccttcctgagaaggactgaacacacga
atccttttctacaggaaaatcttatcccacatctctctcttcctcattct
atttctcaagtttgacaatattaaaatcccctgcaccccccccccccccc
ccgccttggagaaagcaggagggcaatgaaggaggaagtgtgcttgaaga
ttcacagttagaaagaaggctcaactctacactgggagcctcaggataat
ccaggaaacctctcttaatgttgtcactggtatgaaacctaaagaaactg
ggccaggaaacaggttaggcattaatcaaggcttcatttctgatgcccca
ttgcctgaaaggacttacagggcttctttctgtagcaccaagcacaagca
atatgtaaatgttttctttgtctgtttgtttccccaggtgaagactcttc
ctgtctgtgacaggctcttctcaccacagctcccttgtttgaagaaaaac
aaaaaacaaaaaacaaaaacagagggatcagggttcctctaggggaaaag
aagaagaagaaaaacaaaaacctgttgtccctacttcaactctaaaatca
acttgtctggagtgtagggggctgatgaataaaatgtatttagataaaga
ttattttaatctatattagaaggagttgcttgggctttcaaccctttccc
aacacagacaagaaacaatggcatacaaaatattcttgtactttaacctg
gtgctttcctgcctgaagtaaacaaagaccttgtaggagaataaggtcat
gaatttgtgtct

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactgtgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagcttaagggattctgcaaccc
tttttaggtggaacaacattatggagctaaccagtaccccggagcttctt
tgactctagctgcattttatattccaaagatgggcctagttcgccattca
cttgtgaagaggaaggtccattggactggcaacttatatgtccaagtaca
ggaaattcaggtcaaaaggggtaagtggcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71364779_71365887
seq2: B6Ng01-173H16.b_39_1150

seq1  GAATTCACAGCAATGGAGATGCTGCAAGTTTGTTGGAACAAAGAGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCAATGGAGATGCTGCAAGTTTGTTGGAACAAAGAGCACAG  50

seq1  GGCTTAGGTGCGAAGCAGAGCCAGTCTGGAACTCTCTCCTATATTTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGGTGCGAAGCAGAGCCAGTCTGGAACTCTCTCCTATATTTACAG  100

seq1  GTAGACTAGGTGTTCAAAAATGTATAAGACATGCCTAAACAACACCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTAGGTGTTCAAAAATGTATAAGACATGCCTAAACAACACCACTA  150

seq1  GTGGAGAACTCAGAGTATAAACAAATGAGACTTGGGGACATTTTATTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAACTCAGAGTATAAACAAATGAGACTTGGGGACATTTTATTCAA  200

seq1  ACCTTAATGGGTTAGTGTGTGAAGGTGATTTTGGGCATTGCTGACTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAATGGGTTAGTGTGTGAAGGTGATTTTGGGCATTGCTGACTGGGT  250

seq1  CTTCAAAGCAAATGAACAAGGGAAGTCTTTGTCAAAGACTCAATCCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGCAAATGAACAAGGGAAGTCTTTGTCAAAGACTCAATCCTGTG  300

seq1  GAATTAGCATAGTAACAACACTGCCTTCCTGAGAAGGACTGAACACACGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGCATAGTAACAACACTGCCTTCCTGAGAAGGACTGAACACACGA  350

seq1  ATCCTTTTCTACAGGAAAATCTTATCCCACATCTCTCTCTTCCTCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTCTACAGGAAAATCTTATCCCACATCTCTCTCTTCCTCATTCT  400

seq1  ATTTCTCAAGTTTGACAATATTAAAATCCCCTGCA-CCCCCCCCCCCCCC  449
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTCTCAAGTTTGACAATATTAAAATCCCCTGCACCCCCCCCCCCCCCC  450

seq1  CCGCCTTGGAGAAAGCAGGAGGGCAATGAAGGAGGAAGTGTGCTTGAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTTGGAGAAAGCAGGAGGGCAATGAAGGAGGAAGTGTGCTTGAAGA  500

seq1  TTCACAGTTAGAAAGAAGGCTCAACTCTACACTGGGAGCCTCAGGATAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTTAGAAAGAAGGCTCAACTCTACACTGGGAGCCTCAGGATAAT  550

seq1  CCAGGAAACCTCTCTTAATGTTGTCACTGGTATGAAACCTAAAGAAACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAACCTCTCTTAATGTTGTCACTGGTATGAAACCTAAAGAAACTG  600

seq1  GGCCAGGAAACAGGTTAGGCATTAATCAAGGCTTCATTTCTGATGCCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGAAACAGGTTAGGCATTAATCAAGGCTTCATTTCTGATGCCCCA  650

seq1  TTGCCTGAAAGGACTTACAGGGCTTCTTTCTGTAGCACCAAGCACAAGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGAAAGGACTTACAGGGCTTCTTTCTGTAGCACCAAGCACAAGCA  700

seq1  ATATGTAAATGTTTTCTTTGTCTGTTTGTTTCCCCAGGTGAAGACTCTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAATGTTTTCTTTGTCTGTTTGTTTCCCCAGGTGAAGACTCTTC  750

seq1  CTGTCTGTGACAGGCTCTTCTCACCACAGCTCCCTTGTTTGAAGAAAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTGACAGGCTCTTCTCACCACAGCTCCCTTGTTTGAAGAAAAAC  800

seq1  AAAAAACAAAAAACAAAAAACAGAGGGATCA-GGTTCCTCTAGGGGAAAA  848
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  AAAAAACAAAAAAC-AAAAACAGAGGGATCAGGGTTCCTCTAGGGGAAAA  849

seq1  GAAGAAGAAGAAAAACAAAAACCTGTTGTCCCTACTTCAACTCTAAAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAAAACAAAAACCTGTTGTCCCTACTTCAACTCTAAAATC  899

seq1  AACTTGTCT-GAGTGTAGGGGGCTGATGAATAAAATGTATTTAGATAAAG  947
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCTGGAGTGTAGGGGGCTGATGAATAAAATGTATTTAGATAAAG  949

seq1  ATCATTTTAATCTATATTAGAAGGAGTTGCCTGGGCCTCCAACCC-TTCC  996
      || ||||||||||||||||||||||||||| ||||| | |||||| ||||
seq2  ATTATTTTAATCTATATTAGAAGGAGTTGCTTGGGCTTTCAACCCTTTCC  999

seq1  CAACACAGACAAGAAACAAATGCATACAAAATATTCTGTTAACTTTAACC  1046
      |||||||||||||||||||  |||||||||||||||| |  |||||||||
seq2  CAACACAGACAAGAAACAATGGCATACAAAATATTCT-TGTACTTTAACC  1048

seq1  T-GTGCTTTCTTGCTGGAAGGTAAACAAAGACCCTTGTAGGAGAAT-AGG  1094
      | |||||||| |||  ||| ||||||||||| |||||||||||||| |||
seq2  TGGTGCTTTCCTGCCTGAA-GTAAACAAAGA-CCTTGTAGGAGAATAAGG  1096

seq1  TCATG-ATTTGTGTCT  1109
      ||||| ||||||||||
seq2  TCATGAATTTGTGTCT  1112


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