BAC Information

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BAC

Clone NameB6Ng01-174C13
Chromosome13 (Build37)
Map Location 66,745,779 - 66,880,054
singlet/doubletdoublet
Overlap geneMzf6d, Vmn2r-ps106, LOC666027
Upstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
Downstream geneLOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174C13.bB6Ng01-174C13.g
ACCGA002316GA002317
length1,1551,096
definitionB6Ng01-174C13.b B6Ng01-174C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,878,890 - 66,880,054)(66,745,779 - 66,746,872)
sequence
gaattctaaacataataaataaatatatcttgggggaaaaaaaagaaaga
aagaaagaaagagagagagagagagagaggaaggaaggaaggaaggaagg
aaaaaagaaagaaagaaagaaagaaagaaaaagaaagaaagaaagaaaga
aagaaagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaa
gaaagaagaaaattccttatggaagtttcttatagatttgggagtgatga
ctggatgagtgatcctgcttccatttctccttccaggcgtcttcaatagc
tgagggccacacagagggagacagagatgaagtgaggtcaggagctgtaa
tgagacgagctcatcactagtgggcaaccttccggggatgggaactggaa
gtagcagccccaccccagcgcctccagcgcctgcagcaacttagggacat
gggggtccgggcaaagggacagagagctcatgcacgttcatatgtgtgtg
gcggggcggggtccatgggacaggctgggaggcagggcctgaaggcgagg
gcaatgaccccgagctctcagcaggatcccagcagcaggcatggccatgt
tggagagcttaggggtcacgaggggtcacgcgttgtcacacactgctctg
tcctccttctggtccatccagccaatgctcaggccctccacttaaccccc
ttcctcctctctcttccccctcaggcttgggtcaggcagctgtcatgggg
gctgggcgagagggcgaggctggagggtggccagagttcacccggggtct
cctggatggcttggtgatcccagtccctggtggcagtgaccaacaaccac
ctatgtgatccctgacctatgacttggacacgactttacacctaacctgg
atatcatatgtaaaccccaacctttgatccatcatgacctctaatatgcc
ctgtgccctggatgaacactgtcctgttaccctgacatgacttcgacact
gtcaacctcactccaagcagcctcagtctgcccactaaggcatctcagtt
cggacccttagcccaccgcctgcaccagtgatcatggtgacatcaggatt
cgccc
gaattcttattgtcgttatcatcatcattttttattaattataaaaaaca
aataactggaatttgacaaaatgaaaaataaacagatgaaatgaagataa
agaaaagtataagaaacctatacacacagactcaattaaaaaaagaattt
acatataaaatttacatataaaacacaatatacttaaaaagaatatttga
gattaaaaacaaaaaaaaaacacaacaaaacaaatgaacacagaaaccaa
acaaatctaaaagttctggaaaagcattgtgagaaagaaccaccaacaat
gtctttgagtttgtttggtgtttcccatctgctgctgggcataaggtttg
cccttaagagtagtttgaataccccgtgaatgtcctagtattgagtgcat
ctcttgaaaaaagagattcttgtaaatcatacctgaaagcaagtctgtta
gatgatttttaatgtagacaggaactttaatgtctcctgcttcattcatc
ttgtgaccactatgtttctataaaatgatttctacatataggatgccatc
ctcaacaacttcgtgggatagatgcccaggtatagtgtcatccttcatat
catagagcattttatatcataaaaacaattaatattggttttttttgtaa
atgactatcaactggattgaaatggcaatgtagttccattcccctctcag
tatcgagaccccattttgaacagaaccatgcaggccctgtgcatgctgcc
acattctctgtaacttcatatgtgcatctttcatgttttagaagtcctgt
tttacatggtggctgttctcaatcccctctgggcactgatatacttctac
ctatacttccaccatatttcttgagtcctgacccaagggaatttatggag
acagcccatttatgaatgtgtgtccaaagtctttcacattctcaaaactg
attggttaagggtattgtatttctttgtatctaattacagaaggaagaga
tctctgatggtggctgatcagaaccctgaatatgtatatttgtctcagaa
tcagaaaaacttatcatttattgatatagatttaaagtgtgataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66878890_66880054
seq2: B6Ng01-174C13.b_46_1200 (reverse)

seq1  GGGCGAATCCTGATGTCACCATGAATCACTGGTGCAAGCGGTGGGGGCTA  50
      ||||||||||||||||||||||| |||||||||||| |||||  ||||||
seq2  GGGCGAATCCTGATGTCACCATG-ATCACTGGTGCAGGCGGT--GGGCTA  47

seq1  GGGGTCAGAACCTGGAGTGCC-TAGTGGGCAGGGCTGAGGCTGGGTTGGA  99
       ||||| ||| |||   |||| ||||||||| | |||||||| | |||||
seq2  AGGGTCCGAA-CTGAGATGCCTTAGTGGGCA-GACTGAGGCT-GCTTGGA  94

seq1  GTGAGGTGGACAGTGTCGAGGTCATGTCAGGGTTACAGGACAGTG-TCAT  148
      ||||||| ||||||||||| ||||||||||||| ||||||||||| ||||
seq2  GTGAGGTTGACAGTGTCGAAGTCATGTCAGGGTAACAGGACAGTGTTCAT  144

seq1  CCAGGGCACAGGGCAATATAGAGGTCATGATGGGATCAAAGGTTGGGGTT  198
      |||||||||||||||   ||||||||||||| ||||||||||||||||||
seq2  CCAGGGCACAGGGCATATTAGAGGTCATGAT-GGATCAAAGGTTGGGGTT  193

seq1  TACATATGATATCCAGGTTAGGTGTAAAGTCGGTGTCCAAGTCATAGGTC  248
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACATATGATATCCAGGTTAGGTGTAAAGTC-GTGTCCAAGTCATAGGTC  242

seq1  AGGGATCACATAGGTGGTTGTTGGTCACTGCCACCAGGGACTGGGATCAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCACATAGGTGGTTGTTGGTCACTGCCACCAGGGACTGGGATCAC  292

seq1  CAAGCCATCCAGGAGACCCCGGGTGAACTCTGGCCACCCTCCAGCCTCGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCATCCAGGAGACCCCGGGTGAACTCTGGCCACCCTCCAGCCTCGC  342

seq1  CCTCTCGCCCAGCCCCCATGACAGCTGCCTGACCCAAGCCTGAGGGGGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCGCCCAGCCCCCATGACAGCTGCCTGACCCAAGCCTGAGGGGGAA  392

seq1  GAGAGAGGAGGAAGGGGGTTAAGTGGAGGGCCTGAGCATTGGCTGGATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGAGGAAGGGGGTTAAGTGGAGGGCCTGAGCATTGGCTGGATGG  442

seq1  ACCAGAAGGAGGACAGAGCAGTGTGTGACAACGCGTGACCCCTCGTGACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGGAGGACAGAGCAGTGTGTGACAACGCGTGACCCCTCGTGACC  492

seq1  CCTAAGCTCTCCAACATGGCCATGCCTGCTGCTGGGATCCTGCTGAGAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCTCTCCAACATGGCCATGCCTGCTGCTGGGATCCTGCTGAGAGC  542

seq1  TCGGGGTCATTGCCCTCGCCTTCAGGCCCTGCCTCCCAGCCTGTCCCATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGTCATTGCCCTCGCCTTCAGGCCCTGCCTCCCAGCCTGTCCCATG  592

seq1  GACCCCGCCCCGCCACACACATATGAACGTGCATGAGCTCTCTGTCCCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCGCCCCGCCACACACATATGAACGTGCATGAGCTCTCTGTCCCTT  642

seq1  TGCCCGGACCCCCATGTCCCTAAGTTGCTGCAGGCGCTGGAGGCGCTGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGGACCCCCATGTCCCTAAGTTGCTGCAGGCGCTGGAGGCGCTGGG  692

seq1  GTGGGGCTGCTACTTCCAGTTCCCATCCCCGGAAGGTTGCCCACTAGTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTGCTACTTCCAGTTCCCATCCCCGGAAGGTTGCCCACTAGTGA  742

seq1  TGAGCTCGTCTCATTACAGCTCCTGACCTCACTTCATCTCTGTCTCCCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCGTCTCATTACAGCTCCTGACCTCACTTCATCTCTGTCTCCCTC  792

seq1  TGTGTGGCCCTCAGCTATTGAAGACGCCTGGAAGGAGAAATGGAAGCAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCCCTCAGCTATTGAAGACGCCTGGAAGGAGAAATGGAAGCAGG  842

seq1  ATCACTCATCCAGTCATCACTCCCAAATCTATAAGAAACTTCCATAAGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCATCCAGTCATCACTCCCAAATCTATAAGAAACTTCCATAAGGA  892

seq1  ATTTTCTTCTTTCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCT  948
      ||||||||||||||||||||||||||||    ||||||||||||||||||
seq2  ATTTTCTTCTTTCTTCCTTCCTTCCTTC----CTTTCTTTCTTTCTTTCT  938

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  988

seq1  CTTTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTTTCTTTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTTTCTTTCT  1038

seq1  TTCTTTCTTTCTTTTTTCCTTCCTTCCTTCCTTCCTTCCTCTCTCTCTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTTTTCCTTCCTTCCTTCCTTCCTTCCTCTCTCTCTCT  1088

seq1  CTCTCTCTTTCTTTCTTTCTTTCTTTTTTTTCCCCCAAGATATATTTATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTTCTTTCTTTCTTTCTTTTTTTTCCCCCAAGATATATTTATT  1138

seq1  TATTATGTTTAGAATTC  1165
      |||||||||||||||||
seq2  TATTATGTTTAGAATTC  1155

seq1: chr13_66745779_66746872
seq2: B6Ng01-174C13.g_71_1166

seq1  GAATTCTTATTGTCGTTATCATCATCATTTTTTATTAATTATAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTGTCGTTATCATCATCATTTTTTATTAATTATAAAAAACA  50

seq1  AATAACTGGAATTTGACAAAATGAAAAATAAACAGATGAAATGAAGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGGAATTTGACAAAATGAAAAATAAACAGATGAAATGAAGATAA  100

seq1  AGAAAAGTATAAGAAACCTATACACACAGACTCAATTAAAAAAAGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTATAAGAAACCTATACACACAGACTCAATTAAAAAAAGAATTT  150

seq1  ACATATAAAATTTACATATAAAACACAATATACTTAAAAAGAATATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAAATTTACATATAAAACACAATATACTTAAAAAGAATATTTGA  200

seq1  GATTAAAAACAAAAAAAAAACACAACAAAACAAATGAACACAGAAACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAACAAAAAAAAAACACAACAAAACAAATGAACACAGAAACCAA  250

seq1  ACAAATCTAAAAGTTCTGGAAAAGCATTGTGAGAAAGAACCACCAACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTAAAAGTTCTGGAAAAGCATTGTGAGAAAGAACCACCAACAAT  300

seq1  GTCTTTGAGTTTGTTTGGTGTTTCCCATCTGCTGCTGGGCATAAGGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAGTTTGTTTGGTGTTTCCCATCTGCTGCTGGGCATAAGGTTTG  350

seq1  CCCTTAAGAGTAGTTTGAATACCCCGTGAATGTCCTAGTATTGAGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAAGAGTAGTTTGAATACCCCGTGAATGTCCTAGTATTGAGTGCAT  400

seq1  CTCTTGAAAAAAGAGATTCTTGTAAATCATACCTGAAAGCAAGTCTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAAAAAAGAGATTCTTGTAAATCATACCTGAAAGCAAGTCTGTTA  450

seq1  GATGATTTTTAATGTAGACAGGAACTTTAATGTCTCCTGCTTCATTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTTTAATGTAGACAGGAACTTTAATGTCTCCTGCTTCATTCATC  500

seq1  TTGTGACCACTATGTTTCTATAAAATGATTTCTACATATAGGATGCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCACTATGTTTCTATAAAATGATTTCTACATATAGGATGCCATC  550

seq1  CTCAACAACTTCGTGGGATAGATGCCCAGGTATAGTGTCATCCTTCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAACTTCGTGGGATAGATGCCCAGGTATAGTGTCATCCTTCATAT  600

seq1  CATAGAGCATTTTATATCATAAAAACAATTAATATTGGTTTTTTTTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGCATTTTATATCATAAAAACAATTAATATTGGTTTTTTTTGTAA  650

seq1  ATGACTATCAACTGGATTGAAATGGCAATGTAGTTCCATTCCCCTCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTATCAACTGGATTGAAATGGCAATGTAGTTCCATTCCCCTCTCAG  700

seq1  TATCGAGACCCCATTTTGAACAGAACCATGCAGGCCCTGTGCATGCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGAGACCCCATTTTGAACAGAACCATGCAGGCCCTGTGCATGCTGCC  750

seq1  ACATTCTCTGTAACTTCATATGTGCATCTTTCATGTTTTAGAAGTCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCTGTAACTTCATATGTGCATCTTTCATGTTTTAGAAGTCCTGT  800

seq1  TTTACATGGTGGCTGTTCTCAATCCCCTCT-GGCACTGATATACTTCTAC  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTACATGGTGGCTGTTCTCAATCCCCTCTGGGCACTGATATACTTCTAC  850

seq1  CTATACTTCCACCATATTTCCTGAGTCCTGACCCAAGGGATTTTATGGAG  899
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  CTATACTTCCACCATATTTCTTGAGTCCTGACCCAAGGGAATTTATGGAG  900

seq1  ACAGCCCATTTATGAATGTGTGTTCCAAAGTCTTTCACATTCTCAAAACT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACAGCCCATTTATGAATGTGTG-TCCAAAGTCTTTCACATTCTCAAAACT  949

seq1  GATTGGTTAAGGGTATTTGTATTTCTTTGTATCT-ATTACAGAAGGAA-A  997
      ||||||||||||||| |||||||||||||||||| ||||||||||||| |
seq2  GATTGGTTAAGGGTA-TTGTATTTCTTTGTATCTAATTACAGAAGGAAGA  998

seq1  GATCTCTGATGGTGGCTGATCAAGACCCTG-ATATGTTTTTTTTTTTTTT  1046
      ||||||||||||||||||||||  |||||| |||||    | | ||| | 
seq2  GATCTCTGATGGTGGCTGATCAGAACCCTGAATATG----TATATTTGTC  1044

seq1  TTAGAATTAGAAAA--CTATCATTTATTG--ATAGATTTAAGGTGTGATA  1092
      | ||||| ||||||   ||||||||||||  |||||||||| ||||||||
seq2  TCAGAATCAGAAAAACTTATCATTTATTGATATAGATTTAAAGTGTGATA  1094

seq1  CA  1094
      ||
seq2  CA  1096