BAC Information

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BAC

Clone NameB6Ng01-174I14
Chromosome13 (Build37)
Map Location 9,777,859 - 9,933,653
singlet/doubletdoublet
Overlap geneChrm3, LOC100039604
Upstream geneWdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174I14.bB6Ng01-174I14.g
ACCGA002591GA002592
length7891,002
definitionB6Ng01-174I14.b B6Ng01-174I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,932,598 - 9,933,653)(9,777,859 - 9,778,853)
sequence
gaattccaggaaaacagcttaatccttaacctgtcaacaacatgacagca
atccactccagtgtgagctgctcaatcgcagctgttaagtttctctggga
cagacttctctttgtttctgaaagatgctctctatgccagatctgacatt
ttcagagcaacatcacactgcatcccctaaactgagtaaatggtttaaaa
tgttcaagggccgtgataagaaatctctaggatccagttattcatgtctg
gccttcaaaccagtgtttctcaacctgtgggcagacaccactttggggcg
gggaatggtcaaacaaccttttcaccagggtcaattaagatcatcagaaa
acacaaatatttacattacatttcataaaagtagcaaaaatatggttatg
aagtagcaatgaaataattttattattgggagtcactatatcatgaggga
ctgtgttcaagaactgtagcattaggaaggttgaaaaaccactgctttaa
acagggacaggggtaaaatgacattcaaagaaactggccaatatcctaaa
cactttgagaagtttaatattccattttgtggaaaatggagatgagtagt
ttcttgtgtataaaagcctcactctgagctgaagtattgacagagagagg
aaaggtggtagagataaaaaataaactcagcactgagatctttgccacag
agacaagcaggacggcaattccatcttgcagagtacaaaaagcttctctt
ttatttaaactattgatgaagtgggggggggggggggtt

gaattccaggtccagagatgttcaggttctactacatttagtttccaagc
ttgaattgacaagtttccctcaaacataactttcagggctcagtgcataa
aggcacttgcttccaagacctgggttcagttcctgtgatccccatagtga
atggagaaagccacctccttccagttgtcctctgccctccacatgcctgc
ggtgccatgtccacactaccccaagaagtaaagagacaatgtcccaaagt
cagggccatgtttgatatgggcagatccagcggtgttacaggatacagac
catgaagataaattctttcatgcgttcatgaagagttgcactaagaaggc
ttatttcttctatcagttagattggattgttaaatctcttgcacaattaa
gagactgaattcataaaagtaatgtactctggtcactctgtagtggacac
tcagctgccctttactgggtcagctcatttgagcctcggtaactgagaac
tttcccttgcattgcactcttgaagagattgaattgaagggcaggcattg
ttttgtttttgtttatttaggcagggtctcatgtcacatatcttaggtgg
gtcttacacttacaaatgtggccagggatgaccttctgatcttcctgcct
gtctccaaagtggttaacctctgttccaccaaacccggctttgaaactga
ttggaacgatctaatattacctttaattcagaggtggcaaatggcctgac
ttagactggctctttgattccaggaaatcagtaaattttcctctctcact
attttcactaaaggataccgaagatataagatacaacttgccaaacgcat
gaaatttcaagaaggacaaggaccaaagtgtggacactttacccttttct
tagaaatgggaacaaaacaccccatagtaggagtttcagagaacaaaatt
ttggagctgtgacgaaaggatggaccatctagtgattgccataatgcagg
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_9932598_9933653
seq2: B6Ng01-174I14.b_45_833 (reverse)

seq1  AACCCCAGCACAAGGTGAATGGAGACAGATGATTCTCCAGAGTTCACTGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTAGCCAGTTTTGACAATCAATGAACAGTGGGTTTAGTGAGTGACCCCCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCAAAAGATATGGTAGAGAATGATTAAGGAGGACACATGATGTCAACC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGCCCTCCACATATACAGGTATGCACACATGTTGCAGTAGTTAGTTAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGCTCTGTGGTCCCAACAGGTCACACATTCGCACTACATGCCTGCCTG  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGCCTACCTGCCTGCCTGTACCCCCCCCCCCCACTTCATCAATAGTTT  300
                      ||    ||||||||||||||||||||||||||||
seq2  --------------AACC---CCCCCCCCCCCCCACTTCATCAATAGTTT  33

seq1  AAATAAAAGAGAAGCTTTTTGTACTCTGCAAGATGGAATTGCCGTCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGAGAAGCTTTTTGTACTCTGCAAGATGGAATTGCCGTCCTGC  83

seq1  TTGTCTCTGTGGCAAAGATCTCAGTGCTGAGTTTATTTTTTATCTCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTGTGGCAAAGATCTCAGTGCTGAGTTTATTTTTTATCTCTACC  133

seq1  ACCTTTCCTCTCTCTGTCAATACTTCAGCTCAGAGTGAGGCTTTTATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCTCTCTCTGTCAATACTTCAGCTCAGAGTGAGGCTTTTATACA  183

seq1  CAAGAAACTACTCATCTCCATTTTCCACAAAATGGAATATTAAACTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACTACTCATCTCCATTTTCCACAAAATGGAATATTAAACTTCTC  233

seq1  AAAGTGTTTAGGATATTGGCCAGTTTCTTTGAATGTCATTTTACCCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTTAGGATATTGGCCAGTTTCTTTGAATGTCATTTTACCCCTGT  283

seq1  CCCTGTTTAAAGCAGTGGTTTTTCAACCTTCCTAATGCTACAGTTCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTAAAGCAGTGGTTTTTCAACCTTCCTAATGCTACAGTTCTTGA  333

seq1  ACACAGTCCCTCATGATATAGTGACTCCCAATAATAAAATTATTTCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCCCTCATGATATAGTGACTCCCAATAATAAAATTATTTCATTG  383

seq1  CTACTTCATAACCATATTTTTGCTACTTTTATGAAATGTAATGTAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCATAACCATATTTTTGCTACTTTTATGAAATGTAATGTAAATAT  433

seq1  TTGTGTTTTCTGATGATCTTAATTGACCCTGGTGAAAAGGTTGTTTGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTTCTGATGATCTTAATTGACCCTGGTGAAAAGGTTGTTTGACC  483

seq1  ATTCCCCGCCCCAAAGTGGTGTCTGCCCACAGGTTGAGAAACACTGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCGCCCCAAAGTGGTGTCTGCCCACAGGTTGAGAAACACTGGTTT  533

seq1  GAAGGCCAGACATGAATAACTGGATCCTAGAGATTTCTTATCACGGCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCAGACATGAATAACTGGATCCTAGAGATTTCTTATCACGGCCCT  583

seq1  TGAACATTTTAAACCATTTACTCAGTTTAGGGGATGCAGTGTGATGTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTTAAACCATTTACTCAGTTTAGGGGATGCAGTGTGATGTTGC  633

seq1  TCTGAAAATGTCAGATCTGGCATAGAGAGCATCTTTCAGAAACAAAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATGTCAGATCTGGCATAGAGAGCATCTTTCAGAAACAAAGAGA  683

seq1  AGTCTGTCCCAGAGAAACTTAACAGCTGCGATTGAGCAGCTCACACTGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCCCAGAGAAACTTAACAGCTGCGATTGAGCAGCTCACACTGGA  733

seq1  GTGGATTGCTGTCATGTTGTTGACAGGTTAAGGATTAAGCTGTTTTCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTGCTGTCATGTTGTTGACAGGTTAAGGATTAAGCTGTTTTCCTG  783

seq1  GAATTC  1056
      ||||||
seq2  GAATTC  789


seq1: chr13_9777859_9778853
seq2: B6Ng01-174I14.g_71_1072

seq1  GAATTCCAGGTCCAGAGATGTTCAGGTTCTACTACATTTAGTTTCCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCCAGAGATGTTCAGGTTCTACTACATTTAGTTTCCAAGC  50

seq1  TTGAATTGACAAGTTTCCCTCAAACATAACTTTCAGGGCTCAGTGCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGACAAGTTTCCCTCAAACATAACTTTCAGGGCTCAGTGCATAA  100

seq1  AGGCACTTGCTTCCAAGACCTGGGTTCAGTTCCTGTGATCCCCATAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTGCTTCCAAGACCTGGGTTCAGTTCCTGTGATCCCCATAGTGA  150

seq1  ATGGAGAAAGCCACCTCCTTCCAGTTGTCCTCTGCCCTCCACATGCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAGCCACCTCCTTCCAGTTGTCCTCTGCCCTCCACATGCCTGC  200

seq1  GGTGCCATGTCCACACTACCCCAAGAAGTAAAGAGACAATGTCCCAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCATGTCCACACTACCCCAAGAAGTAAAGAGACAATGTCCCAAAGT  250

seq1  CAGGGCCATGTTTGATATGGGCAGATCCAGCGGTGTTACAGGATACAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCATGTTTGATATGGGCAGATCCAGCGGTGTTACAGGATACAGAC  300

seq1  CATGAAGATAAATTCTTTCATGCGTTCATGAAGAGTTGCACTAAGAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATAAATTCTTTCATGCGTTCATGAAGAGTTGCACTAAGAAGGC  350

seq1  TTATTTCTTCTATCAGTTAGATTGGATTGTTAAATCTCTTGCACAATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTCTATCAGTTAGATTGGATTGTTAAATCTCTTGCACAATTAA  400

seq1  GAGACTGAATTCATAAAAGTAATGTACTCTGGTCACTCTGTAGTGGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGAATTCATAAAAGTAATGTACTCTGGTCACTCTGTAGTGGACAC  450

seq1  TCAGCTGCCCTTTACTGGGTCAGCTCATTTGAGCCTCGGTAACTGAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCCCTTTACTGGGTCAGCTCATTTGAGCCTCGGTAACTGAGAAC  500

seq1  TTTCCCTTGCATTGCACTCTTGAAGAGATTGAATTGAAGGGCAGGCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTGCATTGCACTCTTGAAGAGATTGAATTGAAGGGCAGGCATTG  550

seq1  TTTTGTTTTTGTTTATTTAGGCAGGGTCTCATGTCACATATCTTAGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTGTTTATTTAGGCAGGGTCTCATGTCACATATCTTAGGTGG  600

seq1  GTCTTACACTTACAAATGTGGCCAGGGATGACCTTCTGATCTTCCTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACACTTACAAATGTGGCCAGGGATGACCTTCTGATCTTCCTGCCT  650

seq1  GTCTCCAAAGTGGTTAACCTCTGTTCCACCAAACCCGGCTTTGAAACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAAAGTGGTTAACCTCTGTTCCACCAAACCCGGCTTTGAAACTGA  700

seq1  TTGGAACGATCTAATATTACC-TTAATTCAGAGGTGGCAAATGGCCTGAC  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGGAACGATCTAATATTACCTTTAATTCAGAGGTGGCAAATGGCCTGAC  750

seq1  TTAGACTGGCTCTTTGATTCCAGGAAATCAGTAAATTTTCCTCTCTCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGGCTCTTTGATTCCAGGAAATCAGTAAATTTTCCTCTCTCACT  800

seq1  ATTTTCACTAAAGGATACCGAAGATATAAGATACAACTTGCCAAACGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACTAAAGGATACCGAAGATATAAGATACAACTTGCCAAACGCAT  850

seq1  GAAA-TTCAAGAAGAACAAAGACCAAAGTGTGGACACTTTACCC-TTTCT  897
      |||| ||||||||| |||| |||||||||||||||||||||||| |||||
seq2  GAAATTTCAAGAAGGACAAGGACCAAAGTGTGGACACTTTACCCTTTTCT  900

seq1  TAGAAATGGGAACAAAACA-CCCATAGAAGGAGTTACAGAG-ACAAAA-T  944
      ||||||||||||||||||| ||||||| ||||||| ||||| |||||| |
seq2  TAGAAATGGGAACAAAACACCCCATAGTAGGAGTTTCAGAGAACAAAATT  950

seq1  TTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTGCCAT-ATGCAGG  993
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTGCCATAATGCAGG  1000

seq1  GA  995
      ||
seq2  GA  1002


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