BAC Information

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BAC

Clone NameB6Ng01-174M16
Chromosome13 (Build37)
Map Location 100,061,119 - 100,202,092
singlet/doubletdoublet
Overlap genePtcd2, Mrps27, Mtap1b
Upstream geneEG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174M16.bB6Ng01-174M16.g
ACCGA002771GA002772
length8661,115
definitionB6Ng01-174M16.b B6Ng01-174M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,061,119 - 100,061,656)(100,201,007 - 100,202,092)
sequence
gaattcagctagctggggatagaatcagaaaatactccaaggttacacat
tctgctctgataacatattatgaccaaagcccgcgtagggaagaaagggt
tcgctttggtttgtggttctggagggatcaatagggtctcatggtgggag
agaaatagcaacagactgggaaagttgggtgacaggactggttggttgat
cacatttttatccacccataggaaacagagaaaaggaactagcaggaagt
gggaccaagctgtcaaagtctcaaagttgaccctagtgacaggctttccc
caacaagctctactgcccaaagtctccacagcttttccaaacagctctac
caacctggtataacatgttcaagcacacaagcctagaggggacatttctc
attcaaaccacatcctgcccttggcctctgttggctcactgagatttttt
gatgtaaagtacatttagtctgaacccaaagagcccataagcttcgactg
ttcaaaagtgtgtgtgtgtgtgtgtgtgtgtgtggtcttcaacatacaat
ggcaaggactgttcattcacattttaaaaagaaaaggagtcatgagggca
tagtaaagagatattggtttaagctggaagcccagcagggcaatttctaa
attatgtatattatgtacgttgaggtttggtctgtttctatacattataa
tgctaaattctgtacatgggccctaagtgacattcacaagcttttgttgt
gcaaaccttgttcctttactttaaataaaattggctacatccaattaggg
attagaggaggtgggttttaagttacctggttgggagaagagaccttgat
gggatggcggatgaat
gaattcagtgaggccaaagatgagaacgagagagcgtccctaagccccat
ggatgagcctgtgcctgactcagagtctcctgtggagaaggttctgtctc
ctttacgcagtcctccccttcttggatctgagtccccatatgaagacttc
ctgagtgctgatagcaaggttcttggcagacgttccgaaagcccctttga
agggaagaatggaaagcagggcttcccagacagagaaagcccagtttctg
acctgacttccactggtctttaccaagacaaacaggaagagaaaagcacg
ggcttcatacccataaaggaagactttggtccagaaaagaaaaccagtga
tgttgaaaccatgagttctcaatcagctctagctttggatgaaaggaaat
tgggaggagatgtatctccaacacaaatagacgtcagtcagtttggctct
ttcaaagaagacaccaagatgtccatttcagaaggcactgtttcagacaa
gtcagccacacctgtggatgagggtgtggcagaagacacctactcccaca
tggagggtgtggcctccgtctctactgcctctgtggctacaagttcgttt
ccagagccaaccacagatgacgtgtctccttctctgcatgccgaggtggg
ttctccacattccacagaagttgatgactccctgtccgtttctgtggtgc
aaacacctaccacgttccaggaaacagaaatgtctccatctaaagaagag
tgcccaagaccgatgtcaatttctcctccagacttctcccccaagacagc
caaaatccaggacaccagttcaagatcaccgatctgaacagtcttctatg
tctattgagttcggccaggaatccccttgagcatttctctttgcttatgg
acttttagtcggcagtctccagattcaccccttactctgggtgccagtgt
tgcttcatattcacctgaaaacgggcccaactgaagtgggactaatagtc
cctctgatatcccagggactcttagtttgtgtcgcataagattccggcca
acggaagaagtcattcctaccacccaaggaatatgaatctgacttggagc
tccatctctgtgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100061119_100061656
seq2: B6Ng01-174M16.b_45_582

seq1  GAATTCAGCTAGCTGGGGATAGAATCAGAAAATACTCCAAGGTTACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTAGCTGGGGATAGAATCAGAAAATACTCCAAGGTTACACAT  50

seq1  TCTGCTCTGATAACATATTATGACCAAAGCCCGCGTAGGGAAGAAAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTGATAACATATTATGACCAAAGCCCGCGTAGGGAAGAAAGGGT  100

seq1  TCGCTTTGGTTTGTGGTTCTGGAGGGATCAATAGGGTCTCATGGTGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTTGGTTTGTGGTTCTGGAGGGATCAATAGGGTCTCATGGTGGGAG  150

seq1  AGAAATAGCAACAGACTGGGAAAGTTGGGTGACAGGACTGGTTGGTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGCAACAGACTGGGAAAGTTGGGTGACAGGACTGGTTGGTTGAT  200

seq1  CACATTTTTATCCACCCATAGGAAACAGAGAAAAGGAACTAGCAGGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTTATCCACCCATAGGAAACAGAGAAAAGGAACTAGCAGGAAGT  250

seq1  GGGACCAAGCTGTCAAAGTCTCAAAGTTGACCCTAGTGACAGGCTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCAAGCTGTCAAAGTCTCAAAGTTGACCCTAGTGACAGGCTTTCCC  300

seq1  CAACAAGCTCTACTGCCCAAAGTCTCCACAGCTTTTCCAAACAGCTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGCTCTACTGCCCAAAGTCTCCACAGCTTTTCCAAACAGCTCTAC  350

seq1  CAACCTGGTATAACATGTTCAAGCACACAAGCCTAGAGGGGACATTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGTATAACATGTTCAAGCACACAAGCCTAGAGGGGACATTTCTC  400

seq1  ATTCAAACCACATCCTGCCCTTGGCCTCTGTTGGCTCACTGAGATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACCACATCCTGCCCTTGGCCTCTGTTGGCTCACTGAGATTTTTT  450

seq1  GATGTAAAGTACATTTAGTCTGAACCCAAAGAGCCCATAAGCTTCGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAAGTACATTTAGTCTGAACCCAAAGAGCCCATAAGCTTCGACTG  500

seq1  TTCAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGGTCT  538
      ||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGGTCT  538

seq1: chr13_100201007_100202092
seq2: B6Ng01-174M16.g_70_1184 (reverse)

seq1  AGACACAGAGAT-GAGCTC--AGACAGA-TCATTATCC-TGGGT-GTAGG  44
      |||||||||||| ||||||  || |||| ||||  ||| ||||| |||||
seq2  AGACACAGAGATGGAGCTCCAAGTCAGATTCATATTCCTTGGGTGGTAGG  50

seq1  -ATGGC-TCTTCCGTTGG-CGGGATCTTATGCG--ACAAACT-AGAGTCC  88
       ||| | ||||||||||| ||| ||||||||||  ||||||| |||||||
seq2  AATGACTTCTTCCGTTGGCCGGAATCTTATGCGACACAAACTAAGAGTCC  100

seq1  --TGGATATCAGAGGGACTA-TAGT-CCACTTCAGTT-GGCCCGTTTTCA  133
         ||||||||||||||||| |||| ||||||||||| ||||||||||||
seq2  CTGGGATATCAGAGGGACTATTAGTCCCACTTCAGTTGGGCCCGTTTTCA  150

seq1  -GTG-ATATGAAGC-ACACTGGCACCCAGAGTA--GGGTG-ATCTGGAGA  177
       ||| ||||||||| ||||||||||||||||||  ||||| |||||||||
seq2  GGTGAATATGAAGCAACACTGGCACCCAGAGTAAGGGGTGAATCTGGAGA  200

seq1  CTGCCGACT-AAAGTCCAT-AGC-AAGAG-AATGCTC-AGGGGATTCCTG  222
      ||||||||| ||||||||| ||| ||||| ||||||| ||||||||||||
seq2  CTGCCGACTAAAAGTCCATAAGCAAAGAGAAATGCTCAAGGGGATTCCTG  250

seq1  GCCGAACTCAATAGACATAGAAGACTGTTCAGATCGGTGATCTTGAACTG  272
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAACTCAATAGACATAGAAGACTGTTCAGATCGGTGATCTTGAACTG  300

seq1  GTGTCCTGGA-TTTGGCTGTCTTGGGGGAGAAGTCTGGAGGAGAAATTGA  321
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTGGATTTTGGCTGTCTTGGGGGAGAAGTCTGGAGGAGAAATTGA  350

seq1  CATCGGTCTTGGGCACTCTTCTTTAGATGGAGACATTTCTGTTTCCTGGA  371
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGTCTTGGGCACTCTTCTTTAGATGGAGACATTTCTGTTTCCTGGA  400

seq1  ACGTGGTAGGTGTTTGCACCACAGAAACGGACAGGGAGTCATCAACTTCT  421
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGTAGGTGTTTGCACCACAGAAACGGACAGGGAGTCATCAACTTCT  450

seq1  GTGGAATGTGGAGAACCCACCTCGGCATGCAGAGAAGGAGACACGTCATC  471
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGTGGAGAACCCACCTCGGCATGCAGAGAAGGAGACACGTCATC  500

seq1  TGTGGTTGGCTCTGGAAACGAACTTGTAGCCACAGAGGCAGTAGAGACGG  521
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGGCTCTGGAAACGAACTTGTAGCCACAGAGGCAGTAGAGACGG  550

seq1  AGGCCACACCCTCCATGTGGGAGTAGGTGTCTTCTGCCACACCCTCATCC  571
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACACCCTCCATGTGGGAGTAGGTGTCTTCTGCCACACCCTCATCC  600

seq1  ACAGGTGTGGCTGACTTGTCTGAAACAGTGCCTTCTGAAATGGACATCTT  621
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGTGGCTGACTTGTCTGAAACAGTGCCTTCTGAAATGGACATCTT  650

seq1  GGTGTCTTCTTTGAAAGAGCCAAACTGACTGACGTCTATTTGTGTTGGAG  671
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTCTTTGAAAGAGCCAAACTGACTGACGTCTATTTGTGTTGGAG  700

seq1  ATACATCTCCTCCCAATTTCCTTTCATCCAAAGCTAGAGCTGATTGAGAA  721
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCTCCTCCCAATTTCCTTTCATCCAAAGCTAGAGCTGATTGAGAA  750

seq1  CTCATGGTTTCAACATCACTGGTTTTCTTTTCTGGACCAAAGTCTTCCTT  771
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTTTCAACATCACTGGTTTTCTTTTCTGGACCAAAGTCTTCCTT  800

seq1  TATGGGTATGAAGCCCGTGCTTTTCTCTTCCTGTTTGTCTTGGTAAAGAC  821
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTATGAAGCCCGTGCTTTTCTCTTCCTGTTTGTCTTGGTAAAGAC  850

seq1  CAGTGGAAGTCAGGTCAGAAACTGGGCTTTCTCTGTCTGGGAAGCCCTGC  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGTCAGGTCAGAAACTGGGCTTTCTCTGTCTGGGAAGCCCTGC  900

seq1  TTTCCATTCTTCCCTTCAAAGGGGCTTTCGGAACGTCTGCCAAGAACCTT  921
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTCTTCCCTTCAAAGGGGCTTTCGGAACGTCTGCCAAGAACCTT  950

seq1  GCTATCAGCACTCAGGAAGTCTTCATATGGGGACTCAGATCCAAGAAGGG  971
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAGCACTCAGGAAGTCTTCATATGGGGACTCAGATCCAAGAAGGG  1000

seq1  GAGGACTGCGTAAAGGAGACAGAACCTTCTCCACAGGAGACTCTGAGTCA  1021
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGCGTAAAGGAGACAGAACCTTCTCCACAGGAGACTCTGAGTCA  1050

seq1  GGCACAGGCTCATCCATGGGGCTTAGGGACGCTCTCTCGTTCTCATCTTT  1071
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGCTCATCCATGGGGCTTAGGGACGCTCTCTCGTTCTCATCTTT  1100

seq1  GGCCTCACTGAATTC  1086
      |||||||||||||||
seq2  GGCCTCACTGAATTC  1115