BAC Information

Click to search

BAC

Clone NameB6Ng01-176J17
Chromosome13 (Build37)
Map Location 48,678,359 - 48,850,143
singlet/doubletdoublet
Overlap geneAW456874, Barx1
Upstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik
Downstream genePhf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176J17.bB6Ng01-176J17.g
ACCGA004101GA004102
length724803
definitionB6Ng01-176J17.b B6Ng01-176J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,678,359 - 48,679,081)(48,849,595 - 48,850,143)
sequence
gaattcattcttttagtaatggattttttgcacatgtctgaagcttatag
tgaggccttaattatcttcattagccggtccaattgctactttaccttct
ctagtaaaaacagggcttcggcagcatctgcttgtctgtcgaccagcatg
tccacatcctctttggtgattacaggctctttcagttgctcaacccaaga
ccacatcaaactgcacaagatgaaagggtctctctcgccgcatattcgtt
cccaggcttcctcccgggaatttagttctttctacaaaggaagagggaga
gagggagagatctggggggaaaagaggtgtatggacccgaactagaggat
tcataagcacttacagagttgaggctggcctctgaggtgcaacctggacc
ttccccggggcctgcacctctaggtatgggcacttggctaacacaggagc
ttccccaagcccaggctcattcctgtcacaaacagggttagctaactact
gagagaagagtcactacactgtgtggccctgactgattcagagaccatag
aagtagctcaaaatggagtctttttttctccggcatctggtaaacaaaac
agaaatttgacagcaaatgaagtaaaatggttagattaaaaataagagac
cacttataagttaattctgggatcttagctaactaaaccttttaaccgaa
acgtcaaagtttgtgtgttgtgtg
gaattctttagtggaatgaatttcaagaaagcagaatgttgagtctgtgg
cacggttgctaccgattactcttatactggtttacaattttaaaaggcaa
taaagagggggggaggaaacataattttttaaaaatgcagttcggagaag
aaaagagcactaggcagtttagtgtggctgccaagacacgagccaaaaga
ggctgtaattgtggatgggccacatccaaacagtcgaagggcttacgggt
acaacagagtgacatttcccaagtaaaggaaaacatcctgcctgacacct
ttggctgggatgccaactcttctcctgtccttggactcaaccagaaacac
aagctccctcaaggttgcaagcctgccagtcttggtataagaactgggtt
tttggcctttggactcagcctggaaccaaaccatgggcttcactggctct
aagtatgttggcttacaataaagatctggggtctgtctggcttatataac
ttcatagccacacgagcctccccctcccatctctaccttttttcacaagg
aaagtgtggatcgctgtatacacgtgtatgtgcggttcaaatggatgttg
gcttggtttctctgaattactcttactaagacagattgtggggttgagaa
aatgtgttgggctttttgttgctgtgacgaagtgtctgcccacacagctc
aggggaggattctctggttggttttgctcactggctcacaggtaaggcca
gagcaaattagttcatgtcatgaggatggtggtgatgatgattggtggtg
gtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48678359_48679081
seq2: B6Ng01-176J17.b_34_757

seq1  GAATTCATTCTTTTAGTAATGGATTTTTTGCACATGTCTGAAGCTTATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTTTAGTAATGGATTTTTTGCACATGTCTGAAGCTTATAG  50

seq1  TGAGGCCTTAATTATCTTCATTAGCCGGTCCAATTGCTACTTTACCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCTTAATTATCTTCATTAGCCGGTCCAATTGCTACTTTACCTTCT  100

seq1  CTAGTAAAAACAGGGCTTCGGCAGCATCTGCTTGTCTGTCGACCAGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAAAACAGGGCTTCGGCAGCATCTGCTTGTCTGTCGACCAGCATG  150

seq1  TCCACATCCTCTTTGGTGATTACAGGCTCTTTCAGTTGCTCAACCCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCTTTGGTGATTACAGGCTCTTTCAGTTGCTCAACCCAAGA  200

seq1  CCACATCAAACTGCACAAGATGAAAGGGTCTCTCTCGCCGCATATTCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCAAACTGCACAAGATGAAAGGGTCTCTCTCGCCGCATATTCGTT  250

seq1  CCCAGGCTTCCTCCCGGGAATTTAGTTCTTTCTACAAAGGAAGAGGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTTCCTCCCGGGAATTTAGTTCTTTCTACAAAGGAAGAGGGAGA  300

seq1  GAGGGAGAGATCTGGGGGGAAAAGAGGTGTATGGACCCGAACTAGAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGATCTGGGGGGAAAAGAGGTGTATGGACCCGAACTAGAGGAT  350

seq1  TCATAAGCACTTACAGAGTTGAGGCTGGCCTCTGAGGTGCAACCTGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGCACTTACAGAGTTGAGGCTGGCCTCTGAGGTGCAACCTGGACC  400

seq1  TTCCCCGGGGCCTGCACCTCTAGGTATGGGCACTTGGCTAACACAGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCGGGGCCTGCACCTCTAGGTATGGGCACTTGGCTAACACAGGAGC  450

seq1  TTCCCCAAGCCCAGGCTCATTCCTGTCACAAACAGGGTTAGCTAACTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAAGCCCAGGCTCATTCCTGTCACAAACAGGGTTAGCTAACTACT  500

seq1  GAGAGAAGAGTCACTACACTGTGTGGCCCTGACTGATTCAGAGACCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGAGTCACTACACTGTGTGGCCCTGACTGATTCAGAGACCATAG  550

seq1  AAGTAGCTCAAAATGGAGTCTTTTTTTCTCCGGCATCTGGTAAACAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTCAAAATGGAGTCTTTTTTTCTCCGGCATCTGGTAAACAAAAC  600

seq1  AGAAATTTGACAGCAAATGAAGTAAAATGG-TAGATTAAAAATAAGAGAC  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAAATTTGACAGCAAATGAAGTAAAATGGTTAGATTAAAAATAAGAGAC  650

seq1  CACTTATAAGTTAA-TCTGGGATCTTAGCTAACTAAACCTTTTAACCGAA  698
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACTTATAAGTTAATTCTGGGATCTTAGCTAACTAAACCTTTTAACCGAA  700

seq1  ACGTCAAAGTTTGTGTGTGTGTGTG  723
      |||||||||||||||||| ||||||
seq2  ACGTCAAAGTTTGTGTGT-TGTGTG  724

seq1: chr13_48849595_48850143
seq2: B6Ng01-176J17.g_316_868 (reverse)

seq1  ACCACCACC-ATCATCATCACCACCATCCTCATGACATGAACTAATTTGC  49
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACCAATCATCATCACCACCATCCTCATGACATGAACTAATTTGC  50

seq1  TCT-GCCTTACCTGTGAGCCAGTGAGCAAAACCAACCAGAGAATCCTCCC  98
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTTACCTGTGAGCCAGTGAGCAAAACCAACCAGAGAATCCTCCC  100

seq1  CTGAGCTGTGT-GGCAGACACTTCGTCACAGCAAC-AAAAGCCCAACACA  146
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  CTGAGCTGTGTGGGCAGACACTTCGTCACAGCAACAAAAAGCCCAACACA  150

seq1  TTTTCTCAACCCCACAATCTGTCTTAGTAAGAGTAATTCAGAGAAACCAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAACCCCACAATCTGTCTTAGTAAGAGTAATTCAGAGAAACCAA  200

seq1  GCCAACATCCATTTGAACCGCACATACACGTGTATACAGCGATCCACACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACATCCATTTGAACCGCACATACACGTGTATACAGCGATCCACACT  250

seq1  TTCCTTGTGAAAAAAGGTAGAGATGGGAGGGGGAGGCTCGTGTGGCTATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTGAAAAAAGGTAGAGATGGGAGGGGGAGGCTCGTGTGGCTATG  300

seq1  AAGTTATATAAGCCAGACAGACCCCAGATCTTTATTGTAAGCCAACATAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATATAAGCCAGACAGACCCCAGATCTTTATTGTAAGCCAACATAC  350

seq1  TTAGAGCCAGTGAAGCCCATGGTTTGGTTCCAGGCTGAGTCCAAAGGCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCAGTGAAGCCCATGGTTTGGTTCCAGGCTGAGTCCAAAGGCCA  400

seq1  AAAACCCAGTTCTTATACCAAGACTGGCAGGCTTGCAACCTTGAGGGAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAGTTCTTATACCAAGACTGGCAGGCTTGCAACCTTGAGGGAGC  450

seq1  TTGTGTTTCTGGTTGAGTCCAAGGACAGGAGAAGAGTTGGCATCCCAGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTCTGGTTGAGTCCAAGGACAGGAGAAGAGTTGGCATCCCAGCC  500

seq1  AAAGGTGTCAGGCAGGATGTTTTCCTTTACTTGGGAAATGTCACTCTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTCAGGCAGGATGTTTTCCTTTACTTGGGAAATGTCACTCTGTT  550

seq1  GTA  549
      |||
seq2  GTA  553