BAC Information

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BAC

Clone NameB6Ng01-178C03
Chromosome13 (Build37)
Map Location 89,229,271 - 89,365,660
singlet/doubletdoublet
Overlap geneEdil3
Upstream geneLOC667230, EG435375
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178C03.bB6Ng01-178C03.g
ACCGA005209GA005210
length9151,126
definitionB6Ng01-178C03.b B6Ng01-178C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,364,746 - 89,365,660)(89,229,271 - 89,230,406)
sequence
gaattctaaagatgtgctgtaaaatgccatgatgtatgaaaagacttttc
ttagtagatattttaattagaatttatcttcaactgagtcttgtggttag
attctagttaatttaatcttagtagacttagatgggttgaaaaggtttca
tgtgaactctttctcaacatatgagtgctcaagttaagaacaaaaccacc
aagtcaaactcattcttactataatctagaataaatgacagcgtaatatc
ttcaggatttggggtttaggcttctattaaaggaaataattttatttgtg
attttataataattattaacatatttttaactaccagagaaaatgttatc
atgttaaagaagtcatctattttaaagaaaacgttgacaatgaatacagc
atatatcccccatacacatcttgggaagagcatctgttctggtgatttat
ctatgaacatagataattgcttttctcagaaagaatagtaataattgatt
ggaaagttgtaaatatatacaaaaaacatcgtccttttcagagcatggcc
atattaacaaaatgtctttctaattctgatatttcccaactaacaggcag
tacaaggaaaccaagttaggcttctatatacataggtatgcatatcaata
atttttctttaagaggaataaagagaaaagtgtgcatattttgagagttt
ctgaggattgaagccaagattttattcattataggaaaatagtcaactat
gctatagcaccacaatggatgtataattcttagagctaagattaaatgaa
agtcaacaacagaaaaagtcatataaaatgtccacactaaagagggagat
gaaagaggaagagaaataaagttgtagaggttggaatttggggataattt
gggagagatggatgg

gaattcctaaactgtgcttgggtagacacaatcttcctctgccctctgtc
tctctgtcacagatagctaaatacgtgcacacacacacacacacacacac
acacacacacacacacacaggttggttactgtatgtacctggccagtttt
aggtaatctcaattgagaaaaagtttccataagattgggttgtaggacat
ttttataataagtgattgatggggtagggtacagcccactgtgggtggga
ccacccttgagatggtggccctgggttctaagaaagcagactgagcaaga
catgaaaaacaaggcactaagtatcactcttccgtggcctctgcatcagc
tcctgcctcaatgtttaggtccaacaatggccttcttcactctggaatgt
ctgtaaacccagtagctgcttctgcatccacaggattggatggggttcaa
tttagtgatgaagggaggctttctagagagttgtaggttttgtatttatg
tcagaaggcaaaagaaactaggtgttgtcagagaaggatttcagtagcaa
ggagcagggtgaatgcattctctaacaaggatcaaaaacaggcagtcaaa
ataacagcctcttttccctagaatctctttcttttttctttttttttttt
taattgagagatacatgcttgttgtcttccatgtatttatttatttattt
atttatttatttatttatttatttatcttttttcttttcttttttttttt
ttttaacactccagattttatcaccctcctggtccaccgtctgactgttc
cacatcccatacctttctccccaccccaccattgccacaaaaatgtccca
cccacactcaccccaggagacctgtaaactccctgggggccttcctcctc
ttgagggttaggtgcatcttctctgactgaacccagatccagctgtctct
ggttgttggggtctcatatcagctagtgtatattgtctgctagtgatcca
gtgtttggagagatctcaggtcagataattgagactactgatctactaca
ggtggccttcctcagcttattccagcttttttctatccagccaggggtca
gatcttctgttcatgggtggtgcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89364746_89365660
seq2: B6Ng01-178C03.b_33_947 (reverse)

seq1  CCATCCATCTCTCCCAAATTATCCCCAAATTCCAACCTCTACAACTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATCTCTCCCAAATTATCCCCAAATTCCAACCTCTACAACTTTAT  50

seq1  TTCTCTTCCTCTTTCATCTCCCTCTTTAGTGTGGACATTTTATATGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCTCTTTCATCTCCCTCTTTAGTGTGGACATTTTATATGACTT  100

seq1  TTTCTGTTGTTGACTTTCATTTAATCTTAGCTCTAAGAATTATACATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTGTTGACTTTCATTTAATCTTAGCTCTAAGAATTATACATCCA  150

seq1  TTGTGGTGCTATAGCATAGTTGACTATTTTCCTATAATGAATAAAATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGCTATAGCATAGTTGACTATTTTCCTATAATGAATAAAATCTT  200

seq1  GGCTTCAATCCTCAGAAACTCTCAAAATATGCACACTTTTCTCTTTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAATCCTCAGAAACTCTCAAAATATGCACACTTTTCTCTTTATTC  250

seq1  CTCTTAAAGAAAAATTATTGATATGCATACCTATGTATATAGAAGCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAAGAAAAATTATTGATATGCATACCTATGTATATAGAAGCCTAA  300

seq1  CTTGGTTTCCTTGTACTGCCTGTTAGTTGGGAAATATCAGAATTAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTCCTTGTACTGCCTGTTAGTTGGGAAATATCAGAATTAGAAAG  350

seq1  ACATTTTGTTAATATGGCCATGCTCTGAAAAGGACGATGTTTTTTGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGTTAATATGGCCATGCTCTGAAAAGGACGATGTTTTTTGTATA  400

seq1  TATTTACAACTTTCCAATCAATTATTACTATTCTTTCTGAGAAAAGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAACTTTCCAATCAATTATTACTATTCTTTCTGAGAAAAGCAAT  450

seq1  TATCTATGTTCATAGATAAATCACCAGAACAGATGCTCTTCCCAAGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATGTTCATAGATAAATCACCAGAACAGATGCTCTTCCCAAGATGT  500

seq1  GTATGGGGGATATATGCTGTATTCATTGTCAACGTTTTCTTTAAAATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGGGATATATGCTGTATTCATTGTCAACGTTTTCTTTAAAATAGA  550

seq1  TGACTTCTTTAACATGATAACATTTTCTCTGGTAGTTAAAAATATGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTTTAACATGATAACATTTTCTCTGGTAGTTAAAAATATGTTAA  600

seq1  TAATTATTATAAAATCACAAATAAAATTATTTCCTTTAATAGAAGCCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTATAAAATCACAAATAAAATTATTTCCTTTAATAGAAGCCTAA  650

seq1  ACCCCAAATCCTGAAGATATTACGCTGTCATTTATTCTAGATTATAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAATCCTGAAGATATTACGCTGTCATTTATTCTAGATTATAGTAA  700

seq1  GAATGAGTTTGACTTGGTGGTTTTGTTCTTAACTTGAGCACTCATATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTTTGACTTGGTGGTTTTGTTCTTAACTTGAGCACTCATATGTT  750

seq1  GAGAAAGAGTTCACATGAAACCTTTTCAACCCATCTAAGTCTACTAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGTTCACATGAAACCTTTTCAACCCATCTAAGTCTACTAAGAT  800

seq1  TAAATTAACTAGAATCTAACCACAAGACTCAGTTGAAGATAAATTCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAACTAGAATCTAACCACAAGACTCAGTTGAAGATAAATTCTAAT  850

seq1  TAAAATATCTACTAAGAAAAGTCTTTTCATACATCATGGCATTTTACAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCTACTAAGAAAAGTCTTTTCATACATCATGGCATTTTACAGC  900

seq1  ACATCTTTAGAATTC  915
      |||||||||||||||
seq2  ACATCTTTAGAATTC  915


seq1: chr13_89229271_89230406
seq2: B6Ng01-178C03.g_64_1189

seq1  GAATTCCTAAACTGTGCTTGGGTAGACACAATCTTCCTCTGCCCTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAACTGTGCTTGGGTAGACACAATCTTCCTCTGCCCTCTGTC  50

seq1  TCTCTGTCACAGATAGCTAAATACGTGCACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCACAGATAGCTAAATACGTGCACACACACACACACACACACAC  100

seq1  ACACACACACACACACACAGGTTGGTTACTGTATGTACCTGGCCAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACAGGTTGGTTACTGTATGTACCTGGCCAGTTTT  150

seq1  AGGTAATCTCAATTGAGAAAAAGTTTCCATAAGATTGGGTTGTAGGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATCTCAATTGAGAAAAAGTTTCCATAAGATTGGGTTGTAGGACAT  200

seq1  TTTTATAATAAGTGATTGATGGGGTAGGGTACAGCCCACTGTGGGTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATAAGTGATTGATGGGGTAGGGTACAGCCCACTGTGGGTGGGA  250

seq1  CCACCCTTGAGATGGTGGCCCTGGGTTCTAAGAAAGCAGACTGAGCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTTGAGATGGTGGCCCTGGGTTCTAAGAAAGCAGACTGAGCAAGA  300

seq1  CATGAAAAACAAGGCACTAAGTATCACTCTTCCGTGGCCTCTGCATCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAACAAGGCACTAAGTATCACTCTTCCGTGGCCTCTGCATCAGC  350

seq1  TCCTGCCTCAATGTTTAGGTCCAACAATGGCCTTCTTCACTCTGGAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCAATGTTTAGGTCCAACAATGGCCTTCTTCACTCTGGAATGT  400

seq1  CTGTAAACCCAGTAGCTGCTTCTGCATCCACAGGATTGGATGGGGTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACCCAGTAGCTGCTTCTGCATCCACAGGATTGGATGGGGTTCAA  450

seq1  TTTAGTGATGAAGGGAGGCTTTCTAGAGAGTTGTAGGTTTTGTATTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGATGAAGGGAGGCTTTCTAGAGAGTTGTAGGTTTTGTATTTATG  500

seq1  TCAGAAGGCAAAAGAAACTAGGTGTTGTCAGAGAAGGATTTCAGTAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGCAAAAGAAACTAGGTGTTGTCAGAGAAGGATTTCAGTAGCAA  550

seq1  GGAGCAGGGTGAATGCATTCTCTAACAAGGATCAAAAACAGGCAGTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGGTGAATGCATTCTCTAACAAGGATCAAAAACAGGCAGTCAAA  600

seq1  ATAACAGCCTCTTTTCCCTAGAATCTCTTTCTTTTTTCTTTTTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGCCTCTTTTCCCTAGAATCTCTTTCTTTTTTCTTTTTTTTTTTT  650

seq1  TAATTGAGAGATACATGCTTGTTGTCTTCCATGTATTTATTTATTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGAGATACATGCTTGTTGTCTTCCATGTATTTATTTATTTATTT  700

seq1  ATTTATTTATTTATTTATTTATTTATCTTTTTTCTTTTCTTTTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTTATTTATCTTTTTTCTTTTCTTTTTTTTTTT  750

seq1  TTTTAACACTCCAGATTTTATCACCCTCCTGGTCCACCGTCTGACTGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACACTCCAGATTTTATCACCCTCCTGGTCCACCGTCTGACTGTTC  800

seq1  CACATCCCATACC-TTCTCCCCACCCCACCATTGCCACAAAAATGTCCCA  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACATCCCATACCTTTCTCCCCACCCCACCATTGCCACAAAAATGTCCCA  850

seq1  CCCACACTCACCCCAGGAGACCTGTAAACTCCCT-GGGGCCTTCCTCCTC  898
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCACACTCACCCCAGGAGACCTGTAAACTCCCTGGGGGCCTTCCTCCTC  900

seq1  TTGAGGGTTAGGTGCATCTTCTCTGACTGAACCCAGATCCAGCTGTCCTC  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGAGGGTTAGGTGCATCTTCTCTGACTGAACCCAGATCCAGCTGT-CTC  949

seq1  TGGTGTTGGGGGTCTCATATCAGCTAGTGTATATTGTCTGCTTAGTGATC  998
      ||||  | ||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGTTGTTGGGGTCTCATATCAGCTAGTGTATATTGTCTGC-TAGTGATC  998

seq1  CAGTGTTT-GAGAGATCTCAGGGTCCAGATTAATTGAGACTACTGATCCT  1047
      |||||||| |||||||||||||   |||| ||||||||||||||||| ||
seq2  CAGTGTTTGGAGAGATCTCAGG--TCAGA-TAATTGAGACTACTGAT-CT  1044

seq1  ACTACAGGGTTGCCTTCCTCAGCTTATTCCAGCTTTTTCCTAATTCAAGC  1097
      |||||| ||| ||||||||||||||||||||||||||| |||  || |||
seq2  ACTACA-GGTGGCCTTCCTCAGCTTATTCCAGCTTTTTTCTA--TCCAGC  1091

seq1  AAGGGGGTCAGTATCTTCTGTTCATTGGTTGGGTGCAAA  1136
       | |||||||| ||||||||||||| |||  ||||||||
seq2  CA-GGGGTCAG-ATCTTCTGTTCATGGGT--GGTGCAAA  1126


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