BAC Information

Click to search

BAC

Clone NameB6Ng01-179H08
Chromosome13 (Build37)
Map Location 61,398,468 - 61,399,436
singlet/doubletsinglet
Overlap genenone
Upstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps
Downstream geneLOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179H08.bB6Ng01-179H08.g
ACCGA006172GA006173
length1,221973
definitionB6Ng01-179H08.b B6Ng01-179H08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctttaactcatttttaatggggttatttgaatt
tctggagttcagcttcttgaactctttgtatatattggatattagtcccc
tatcagatttaggattggtaaaatattcaagtctaagtggatcaaagaac
tctgcataaaaccagagacactgaaatttgtagaggagaaagtggggaaa
accttcgaagatatgggcactgaggaaaaattcctaaacagaacagcaat
ggcctgtgctataagatcaaaaatcaacaaatgggacctcataaaattgc
aaagcttctgtaggacaaaagatactgtcaataagacaaaaaaggccacc
aaaaggttgggaaataatttttaccaaacaccaggtttttaatacagaag
aaaaacaagaagtctaggtgaatacatccatcaaggcacactggttctta
acacaaaacaaagaagatgcatatataaaaagatggcgggagccaggcct
tgtttacaactgagaataggaacaacccttaattaagatcggctaaacac
aggagctaggtgaatgctctgatacaatgctagtctattgttaaacccac
caccagggatccttttgtaaatacctgattatgctattcctctgggccta
gtgaaaaacctgtaccaggggaattccattctactaactctttcatgaat
aatactacaatccacctatttcctaggccattgtgtattcctgtgtttgg
gtgtgactcagctattgtcctaagtaattactatgcagactagccctgag
cttttctagctctattcaagtaaattgtaatgcctaattagtttcactgt
ctctactagaagtaaatttgagtgttactgaataggtaacattcttactg
aattacaagctcagggtcggatttcaaggactttctaggactttagaaca
ctggagaaggcttagcttttatgtcaaaatcctttaaagggcactttatt
attaaaataattgctgaaaggagaacacatgggatccatacacaagactt
aacgcagaagaacagttttgagtgtattgtgctatgggatgcaagttcca
ggagcttagtttcaatgaaactctttgcctcggaactgcttccaggtttc
tagcctgttcaagcagccttaccttgaattgcaatgtatagcaatttctt
cccctctcttttacgtacgta
gaattctgttgtgtctatccagtaagacatgatggctactatagtttaag
cacttcactaatttctatttgattcccataagagtttgattttgtttaat
agttgcacaaaatatattgaaaaaaggtttaagttcaacactagtgtctg
tcttcctttaattttgaaaagtagtgacttttttaattaatattttttat
tacatattttcctcaattacatttccaatgctatcccaaaagccccccac
accctcccccccacttccctacccactcattcccattttttttggccctg
gcgttcccctgtactggggcatatacagtttgcatgtccaatgggcctct
ctttccagtgatggccgactatgccatcttttgatacatatggagctaga
gtcaagagctccggggtactggttagttcatagtgttgttctacctatag
ggttgcagatccctttagctccttgggtactttctctagctcccccattg
ggagccctgtgatccatccattagctgactgtgagcatccacttctgtgt
ttgctaggccccggcatagtctcacaagagacagctacatctgggtcctt
tcgataaaatcttgctagtgtatgcaatggtgtcagtgtttctagtaacc
ctcattatatggacaatacataggatgaggtcaggaaaatggtcctctca
ccatgtagattgacatcttttgccaggtcaaagtgttattgtgaaatgtc
aatgtctggaaattttaataaagaatttacttaaagcaactatcgaaaag
tcactgccctccttgtaagagatatacctacctatgtaataggcataatg
tctggtaggggttgactacaagccaaacttctttaaaatatgtatttctt
tcttggttagagaatagacaccattttggcatataactggtgataaaagg
aagaagatataagcccgtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_61398468_61399436
seq2: B6Ng01-179H08.g_65_1037 (reverse)

seq1  TACACAC-GGCTTATATC-TCTTCCTTTTATCACCAGTTATATGCCAAAA  48
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  TACACACGGGCTTATATCTTCTTCCTTTTATCACCAGTTATATGCCAAAA  50

seq1  T-GTGTCTATTCTCTAACCAAGAAAGAAATACATATTTTAAAGAAGTTTG  97
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTATTCTCTAACCAAGAAAGAAATACATATTTTAAAGAAGTTTG  100

seq1  GCTTGTAGTCAACCCCTACCAGACATTATGCCTATTACATAGGTAGGTAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAGTCAACCCCTACCAGACATTATGCCTATTACATAGGTAGGTAT  150

seq1  ATCTCTTACAAGGAGGGCAGTGACTTTTCGATAGTTGCTTTAAGT-AATT  196
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCTCTTACAAGGAGGGCAGTGACTTTTCGATAGTTGCTTTAAGTAAATT  200

seq1  CTTTATTAAAATTTCCAGACATTGACATTTCACAATAACACTTTGACCTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTAAAATTTCCAGACATTGACATTTCACAATAACACTTTGACCTG  250

seq1  GCAAAAGATGTCAATCTACATGGTGAGAGGACCATTTTCCTGACCTCATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGATGTCAATCTACATGGTGAGAGGACCATTTTCCTGACCTCATC  300

seq1  CTATGTATTGTCCATATAATGAGGGTTACTAGAAACACTGACACCATTGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATTGTCCATATAATGAGGGTTACTAGAAACACTGACACCATTGC  350

seq1  ATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGT  400

seq1  GAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGC  450

seq1  TAATGGATGGATCACAGGGCTCCCAATGGGGGAGCTAGAGAAAGTACCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGATGGATCACAGGGCTCCCAATGGGGGAGCTAGAGAAAGTACCCA  500

seq1  AGGAGCTAAAGGGATCTGCAACCCTATAGGTAGAACAACACTATGAACTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTAAAGGGATCTGCAACCCTATAGGTAGAACAACACTATGAACTA  550

seq1  ACCAGTACCCCGGAGCTCTTGACTCTAGCTCCATATGTATCAAAAGATGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACCCCGGAGCTCTTGACTCTAGCTCCATATGTATCAAAAGATGG  600

seq1  CATAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTGTA  650

seq1  TATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAAAATGGGAATGAGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAAAATGGGAATGAGTG  700

seq1  GGTAGGGAAGTGGGGGGGAGGGTGTGGGGGGCTTTTGGGATAGCATTGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGAAGTGGGGGGGAGGGTGTGGGGGGCTTTTGGGATAGCATTGGA  750

seq1  AATGTAATTGAGGAAAATATGTAATAAAAAATATTAATTAAAAAAGTCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATTGAGGAAAATATGTAATAAAAAATATTAATTAAAAAAGTCAC  800

seq1  TACTTTTCAAAATTAAAGGAAGACAGACACTAGTGTTGAACTTAAACCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCAAAATTAAAGGAAGACAGACACTAGTGTTGAACTTAAACCTT  850

seq1  TTTTCAATATATTTTGTGCAACTATTAAACAAAATCAAACTCTTATGGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATATATTTTGTGCAACTATTAAACAAAATCAAACTCTTATGGGA  900

seq1  ATCAAATAGAAATTAGTGAAGTGCTTAAACTATAGTAGCCATCATGTCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAGAAATTAGTGAAGTGCTTAAACTATAGTAGCCATCATGTCTT  950

seq1  ACTGGATAGACACAACAGAATTC  969
      |||||||||||||||||||||||
seq2  ACTGGATAGACACAACAGAATTC  973