BAC Information

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BAC

Clone NameB6Ng01-180A02
Chromosome13 (Build37)
Map Location 64,779,135 - 64,967,178
singlet/doubletdoublet
Overlap geneLOC631470, Cntnap3
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180A02.bB6Ng01-180A02.g
ACCGA006563GA006564
length1,0881,024
definitionB6Ng01-180A02.b B6Ng01-180A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,966,088 - 64,967,178)(64,779,135 - 64,780,152)
sequence
gaattccaggtgtctcatctcattacttcctcttccttagtatgaaaagg
ctataggcagatattctataattaatttagatgaactcatctgtaatttt
tttctaaggaagaacaagaagtttgtggtttaaggtattattatatataa
agtgaactcatacattgttcggacacttaaagaaattagataagataatg
tgaaatacacttttaaaaagaggatataacaggaagagagcaaaggttga
tgaggtctgaggagaattagataagtagaagagagttaagcacagcacag
atgacctgatatctaagcataaggcctacaagacagagttctggcctcac
gtctgacccacctaaaattcttctcagccttttagtcagagtcctccctg
agtctgatgaatgatgaacgctgtacagaaatgataagaatagcacagca
aactaagaaattgtggctcttgaaggccttagaagtcagacatatgactt
tgatagtctcttaatttatgggaacagttgaactctcaaggttcctgact
ggcatgtgagtatgtcagtattgctatttttctctactgacagcctagct
tgtcctcctctgctttctaaagaacaaggatgaaaagttagtcacaatgc
tgcttacttttgtccatatgattttacagaacttatataaaataattgta
cacaaactagctacacacatgatgtatatgttgccatccagctgcagaaa
aatttggcacatatacattccttgtaattcaagcttcaccattaaaccta
catttttgattatcaagtttattttgatagttcctagaaatgcaaattaa
taagtgttttgcaaatccaaaggttctaaaatgtgctatattccaaaata
caaaaaggaataaaatagggagagagagagagagagagagagagagagag
agagagagagagagagagagagagagattggcttctacttttcactcttc
tagtttccttagaaaactatatgattcaaagtacttaaataacactttaa
agccaactgtagactctgggacctaggtgagtggctca
gaattccatgtctgtgaatcctgctacacataacaaccttttgatcaatc
tgggaaatgatagtgtggtgataacattaaagaatcgataagctctcaac
aaaagggaatgggcagaaaattaaataacaagaggaagacatcaagaaga
tgaagcatagccaaggtggaaatggtcaattttgtcaaaaactctgggac
tcctgatgctttcatctgtcctctgaggctaggtctcagtcttgcccaga
ccataataagattcaaaggaataaaatatggtatgaataggaatgagcat
ggtgcaaaactactgaataaagatgaaaagcacgaagctaaaaggaggaa
tcctgatgaccacatttaggagtcatttgatagaattttataaacatgtc
tgccaacttctgcaaacctgtagttagagaaaaacaacaagaaagacaaa
ctaacaacaaacacaagaagtgccagggggattcacagcatcagtctgtt
tatgtcctcagctgacagaaacacagaaaaactcaacttcaataatgtgt
atctttaaatccttgatgttttaaaaacacagcaggatgccaaagaggga
tgaatccaaaagctacaaaagagaaatttcgtgatgtttctgattagcaa
gttagaaacagtaagtgaagttttctgagctctctggtctatcatctcct
ctgagtactgccatacatcggagcacatctttaccaacacagactcacct
tcctgattcacccacttcttttgtatatgtttgtatgtgcatagggatct
ctctctgtctctctctgtctctttctctgtctctgtctagttctctctgt
ctctctctgtctctgtctctgtcgatgtctctctctctgtctctctgtat
atgcaggccagagattgacatcagatttttttttttttttgagacagggt
ttcccactgaaacctagagcacactgattgcctagactgttgggtcaatt
attctccaggtatcccttccattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64966088_64967178
seq2: B6Ng01-180A02.b_49_1136 (reverse)

seq1  TGAGCCACCTCA-CTAGCT-CCAGAGTCTACAGTTTTGCTTTTTAAGTGT  48
      ||||||| |||| |||| | |||||||||||||  |||  ||| ||||| 
seq2  TGAGCCA-CTCACCTAGGTCCCAGAGTCTACAG--TTGGCTTTAAAGTG-  46

seq1  TTATTTAAGTAACTTTGAATCATATAGTTTTTCTAAGGAAACTAGAAGAG  98
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  TTATTTAAGT-ACTTTGAATCATATAG-TTTTCTAAGGAAACTAGAAGAG  94

seq1  TGAAAAGTAGAAGCCAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  148
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGAAAAGTAGAAGCCAA-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  143

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCCCTATTTTATTCCTTTTTGTATTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCCCTATTTTATTCCTTTTTGTATTT  193

seq1  TGGAATATAGCACATTTTAGAACCTTTGGATTTGCAAAACACTTATTAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATAGCACATTTTAGAACCTTTGGATTTGCAAAACACTTATTAAT  243

seq1  TTGCATTTCTAGGAACTATCAAAATAAACTTGATAATCAAAAATGTAGGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTCTAGGAACTATCAAAATAAACTTGATAATCAAAAATGTAGGT  293

seq1  TTAATGGTGAAGCTTGAATTACAAGGAATGTATATGTGCC-AATTTTTCT  347
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTAATGGTGAAGCTTGAATTACAAGGAATGTATATGTGCCAAATTTTTCT  343

seq1  GCAGCTGGATGGCAACATATACATCATGTGTGTAGCTA-TTTGTGTACAA  396
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCAGCTGGATGGCAACATATACATCATGTGTGTAGCTAGTTTGTGTACAA  393

seq1  TTATTTTATATAAGTTCTGTAAAATCATATGGACAAAAGTAAGCAGCATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATATAAGTTCTGTAAAATCATATGGACAAAAGTAAGCAGCATT  443

seq1  GTGACTAACTTTTCATCCTTGTTCTTTAGAAAGCAGAGGAGGACAAGCTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAACTTTTCATCCTTGTTCTTTAGAAAGCAGAGGAGGACAAGCTA  493

seq1  GGCTGTCAGTAGAGAAAAATAGCAATACTGACATACTCACATGCCAGTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCAGTAGAGAAAAATAGCAATACTGACATACTCACATGCCAGTCA  543

seq1  GGAACCTTGAGAGTTCAACTGTTCCCATAAATTAAGAGACTATCAAAGTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTTGAGAGTTCAACTGTTCCCATAAATTAAGAGACTATCAAAGTC  593

seq1  ATATGTCTGACTTCTAAGGCCTTCAAGAGCCACAATTTCTTAGTTTGCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTGACTTCTAAGGCCTTCAAGAGCCACAATTTCTTAGTTTGCTG  643

seq1  TGCTATTCTTATCATTTCTGTACAGCGTTCATCATTCATCAGACTCAGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTCTTATCATTTCTGTACAGCGTTCATCATTCATCAGACTCAGGG  693

seq1  AGGACTCTGACTAAAAGGCTGAGAAGAATTTTAGGTGGGTCAGACGTGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTGACTAAAAGGCTGAGAAGAATTTTAGGTGGGTCAGACGTGAG  743

seq1  GCCAGAACTCTGTCTTGTAGGCCTTATGCTTAGATATCAGGTCATCTGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAACTCTGTCTTGTAGGCCTTATGCTTAGATATCAGGTCATCTGTG  793

seq1  CTGTGCTTAACTCTCTTCTACTTATCTAATTCTCCTCAGACCTCATCAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTAACTCTCTTCTACTTATCTAATTCTCCTCAGACCTCATCAAC  843

seq1  CTTTGCTCTCTTCCTGTTATATCCTCTTTTTAAAAGTGTATTTCACATTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCTCTTCCTGTTATATCCTCTTTTTAAAAGTGTATTTCACATTA  893

seq1  TCTTATCTAATTTCTTTAAGTGTCCGAACAATGTATGAGTTCACTTTATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTAATTTCTTTAAGTGTCCGAACAATGTATGAGTTCACTTTATA  943

seq1  TATAATAATACCTTAAACCACAAACTTCTTGTTCTTCCTTAGAAAAAAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAATACCTTAAACCACAAACTTCTTGTTCTTCCTTAGAAAAAAAT  993

seq1  TACAGATGAGTTCATCTAAATTAATTATAGAATATCTGCCTATAGCCTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGAGTTCATCTAAATTAATTATAGAATATCTGCCTATAGCCTTT  1043

seq1  TCATACTAAGGAAGAGGAAGTAATGAGATGAGACACCTGGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTAAGGAAGAGGAAGTAATGAGATGAGACACCTGGAATTC  1088

seq1: chr13_64779135_64780152
seq2: B6Ng01-180A02.g_64_1087

seq1  GAATTCCATGTCTGTGAATCCTGCTACACATAACAACCTTTTGATCAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCTGTGAATCCTGCTACACATAACAACCTTTTGATCAATC  50

seq1  TGGGAAATGATAGTGTGGTGATAACATTAAAGAATCGATAAGCTCTCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATGATAGTGTGGTGATAACATTAAAGAATCGATAAGCTCTCAAC  100

seq1  AAAAGGGAATGGGCAGAAAATTAAATAACAAGAGGAAGACATCAAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAATGGGCAGAAAATTAAATAACAAGAGGAAGACATCAAGAAGA  150

seq1  TGAAGCATAGCCAAGGTGGAAATGGTCAATTTTGTCAAAAACTCTGGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCATAGCCAAGGTGGAAATGGTCAATTTTGTCAAAAACTCTGGGAC  200

seq1  TCCTGATGCTTTCATCTGTCCTCTGAGGCTAGGTCTCAGTCTTGCCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGCTTTCATCTGTCCTCTGAGGCTAGGTCTCAGTCTTGCCCAGA  250

seq1  CCATAATAAGATTCAAAGGAATAAAATATGGTATGAATAGGAATGAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATAAGATTCAAAGGAATAAAATATGGTATGAATAGGAATGAGCAT  300

seq1  GGTGCAAAACTACTGAATAAAGATGAAAAGCACGAAGCTAAAAGGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAAACTACTGAATAAAGATGAAAAGCACGAAGCTAAAAGGAGGAA  350

seq1  TCCTGATGACCACATTTAGGAGTCATTTGATAGAATTTTATAAACATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGACCACATTTAGGAGTCATTTGATAGAATTTTATAAACATGTC  400

seq1  TGCCAACTTCTGCAAACCTGTAGTTAGAGAAAAACAACAAGAAAGACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACTTCTGCAAACCTGTAGTTAGAGAAAAACAACAAGAAAGACAAA  450

seq1  CTAACAACAAACACAAGAAGTGCCAGGGGGATTCACAGCATCAGTCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAACAAACACAAGAAGTGCCAGGGGGATTCACAGCATCAGTCTGTT  500

seq1  TATGTCCTCAGCTGACAGAAACACAGAAAAACTCAACTTCAATAATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCTCAGCTGACAGAAACACAGAAAAACTCAACTTCAATAATGTGT  550

seq1  ATCTTTAAATCCTTGATGTTTTAAAAACACAGCAGGATGCCAAAGAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAATCCTTGATGTTTTAAAAACACAGCAGGATGCCAAAGAGGGA  600

seq1  TGAATCCAAAAGCTACAAAAGAGAAATTTCGTGATGTTTCTGATTAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCAAAAGCTACAAAAGAGAAATTTCGTGATGTTTCTGATTAGCAA  650

seq1  GTTAGAAACAGTAAGTGAAGTTTTCTGAGCTCTCTGGTCTATCATCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAACAGTAAGTGAAGTTTTCTGAGCTCTCTGGTCTATCATCTCCT  700

seq1  CTGAGTACTGCCATACATCGGAGCACATCTTTACCAACACAGACTCACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTACTGCCATACATCGGAGCACATCTTTACCAACACAGACTCACCT  750

seq1  TCCTGATTCACCCACTTCTTTTGTATATGTTTGTATGTGCATAGGGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTCACCCACTTCTTTTGTATATGTTTGTATGTGCATAGGGATCT  800

seq1  CTCTCTGTCTCTCTCTGTCTCTTTCTCTGTCTCTGTCTAGTTCTCTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTCTCTCTGTCTCTTTCTCTGTCTCTGTCTAGTTCTCTCTGT  850

seq1  CTCTCTCTGTCTCTGTCTCTGTCGATGTCTCTCTCTCTGTCTCTCTGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTCTCTGTCTCTGTCGATGTCTCTCTCTCTGTCTCTCTGTAT  900

seq1  ATGCAGGCCAGAGATTGACATCAGA---TTTTTTTTTTTTGAGACAGGGT  947
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  ATGCAGGCCAGAGATTGACATCAGATTTTTTTTTTTTTTTGAGACAGGGT  950

seq1  TTCCCACTG-AACCTAGAGCACACTGATTGCCTAGACTGTTGGGTCAA-T  995
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  TTCCCACTGAAACCTAGAGCACACTGATTGCCTAGACTGTTGGGTCAATT  1000

seq1  AATCTCCAGGTAT-CCTTCCATTT  1018
      | ||||||||||| ||||||||||
seq2  ATTCTCCAGGTATCCCTTCCATTT  1024