BAC Information

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BAC

Clone NameB6Ng01-180E23
Chromosome13 (Build37)
Map Location 23,489,939 - 23,674,980
singlet/doubletdoublet
Overlap geneAbt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d
Upstream geneV1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a
Downstream geneHist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180E23.bB6Ng01-180E23.g
ACCGA006784GA006785
length4971,069
definitionB6Ng01-180E23.b B6Ng01-180E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,489,939 - 23,490,441)(23,673,919 - 23,674,980)
sequence
tgaaaggttggattcaaaagcaatgggagtggggtgtcttaagacatggg
aatttcccttgcactcatctgagatgaataacacagtgagccaaagtcag
aagttgaatggacagaacaagttttaagggatgtttctaagagtacagtt
aatgaaatcttagcttttcaggagacagaaaataaaaatagtcacagctt
tcttctacaacagggaaaagttgaggttgcacagaacattgtccagttca
ctgctgattctaatctcaacgctcaggtctcctctactggcttcccttgg
cctcctgatcctgggaacctaggaggagagtaataggaatctgtttctcc
ctaatgtgacattatgtaagggggggtggtggttctggagggccctctgt
agggtctgcctttgcctatccttggctctgctgtgtccctttttctgaca
tgtaatcacagtctctcagtttttgttactgtttttgttttgttttt
gaattcactggccccaaggccagggaagtcaccatgggcagaggttggag
gaaagaaagagagaaggggtatacaccaggagagaagagaaggggaaatg
tgggaggaaagaaaaagcagaaagaccaaaatgtctgaattacataagga
agagcctctgggggaagggcagcccatcccctgggctagaaatttcaggg
ttgggggcagggtgtgccagatagggactgtgggaagctgggagaacctg
gagaccaggtccgctttgatatgtaaaatatgttaacttgtcccagggtc
tgaagctaaatactgaagatatttacccaagtttttattgactacaaggt
ctgggtcttttttttttttttttttaattcttggagggaagggctggagg
gacagctaaagcatgtgctccgtgtgcctggtggcctgagtttagtccct
aaagtgtatataaaggtaagaaatatataaacacaaataaaaaaaatttt
ttaagttcttagcagacactgatgtttcttctctggtgactctttgggaa
caactgataatgctgacgaaagttaatgaagtcctggaccatatgaagtt
ttccttgaggaatagatagaagatttacacgtcaatctctggtgcttatt
ttacagattaggaagttagagaaagctgggtgtggtggaccacgatttta
atcccagtacgtgggaggcagaggtaggaagatatctgtgagcctggtgt
atagagtaagtttccaggtcagggctattttcacagaatatatggaaaga
tgaataggagggaggggaagaaattgtagaaagcttctaggttagaaaaa
tttgaaacataattcagtgtttcctaggtttctcaagggcttggattgat
tagagggttgggttttgaagacaggatagcattcttataccttaaaggga
actggaaaaaggatctttgactgaccctcagcccttctctgaaattgtca
gctttaagaatgagacaacagcttgctttagctatcaaattgaagaatag
acagtgaacttgcctaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23489939_23490441
seq2: B6Ng01-180E23.b_45_547

seq1  GAATTCTGAAAGGTTGGATTCAAAAGCAATGGGAGTGGGGTGTCTTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAGGTTGGATTCAAAAGCAATGGGAGTGGGGTGTCTTAAGA  50

seq1  CATGGGAATTTCCCTTGCACTCATCTGAGATGAATAACACAGTGAGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAATTTCCCTTGCACTCATCTGAGATGAATAACACAGTGAGCCAA  100

seq1  AGTCAGAAGTTGAATGGACAGAACAAGTTTTAAGGGATGTTTCTAAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAGTTGAATGGACAGAACAAGTTTTAAGGGATGTTTCTAAGAGT  150

seq1  ACAGTTAATGAAATCTTAGCTTTTCAGGAGACAGAAAATAAAAATAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAATGAAATCTTAGCTTTTCAGGAGACAGAAAATAAAAATAGTCA  200

seq1  CAGCTTTCTTCTACAACAGGGAAAAGTTGAGGTTGCACAGAACATTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCTTCTACAACAGGGAAAAGTTGAGGTTGCACAGAACATTGTCC  250

seq1  AGTTCACTGCTGATTCTAATCTCAACGCTCAGGTCTCCTCTACTGGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTGCTGATTCTAATCTCAACGCTCAGGTCTCCTCTACTGGCTTC  300

seq1  CCTTGGCCTCCTGATCCTGGGAACCTAGGAGGAGAGTAATAGGAATCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCCTCCTGATCCTGGGAACCTAGGAGGAGAGTAATAGGAATCTGT  350

seq1  TTCTCCCTAATGTGACATTATGTAAGGGGGGGTGGTGGTTCTGGAGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTAATGTGACATTATGTAAGGGGGGGTGGTGGTTCTGGAGGGCC  400

seq1  CTCTGTAGGGTCTGCCTTTGCCTATCCTTGGCTCTGCTGTGTCCCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGGGTCTGCCTTTGCCTATCCTTGGCTCTGCTGTGTCCCTTTTT  450

seq1  CTGACATGTAATCACAGTCTCTCAGTTTTTGTTACTGTTTTTGTTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGTAATCACAGTCTCTCAGTTTTTGTTACTGTTTTTGTTTTGTT  500

seq1  TTT  503
      |||
seq2  TTT  503

seq1: chr13_23673919_23674980
seq2: B6Ng01-180E23.g_66_1134 (reverse)

seq1  GTTTAGGCAGGTCCACCTGTCTA-TCTTCAGTATTGATAGCCTAAAAGCA  49
      ||||||||| || || ||||||| |||||| | ||||||||   ||||||
seq2  GTTTAGGCAAGTTCA-CTGTCTATTCTTCAAT-TTGATAGC--TAAAGCA  46

seq1  GGCCTGTTGTCTCATTCTTTAATGCTGACATTCTCAGGAGAGGGCTGAGG  99
       | |||||||||||||| |||| ||||||| | ||||   ||||||||||
seq2  AG-CTGTTGTCTCATTC-TTAAAGCTGACAATTTCAGAGAAGGGCTGAGG  94

seq1  GTCAGTC-AAGATCCTTTTTTCCAAGTCCC-TTAAGGTATA--GATGCTA  145
      ||||||| ||||||| ||||||||  |||| ||||||||||   ||||||
seq2  GTCAGTCAAAGATCC-TTTTTCCAGTTCCCTTTAAGGTATAAGAATGCTA  143

seq1  TCCTGTC-TCAAAACCAAACCCTCTAATCAATCC-AGGCCTTG-GAAACC  192
      ||||||| |||||||| ||||||||||||||||| || ||||| ||||||
seq2  TCCTGTCTTCAAAACCCAACCCTCTAATCAATCCAAGCCCTTGAGAAACC  193

seq1  TAGG-AACACTGAATTATGTT--CAAGTTTTCTAACCT-GGAGCTTTCTA  238
      |||| ||||||||||||||||   || ||||||||||| | |||||||||
seq2  TAGGAAACACTGAATTATGTTTCAAATTTTTCTAACCTAGAAGCTTTCTA  243

seq1  CAATTTCTTCCCCTCCCTCCT-TTCATTCTTTCCATGTATTCTGTG-TAA  286
      ||||||||||||||||||||| |||| ||||||||| |||||||||  ||
seq2  CAATTTCTTCCCCTCCCTCCTATTCA-TCTTTCCATATATTCTGTGAAAA  292

seq1  TAGCCCTGGCCTGG-AACTTACTCTATACACCAGGCTCACAGATATCTTC  335
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGACCTGGAAACTTACTCTATACACCAGGCTCACAGATATCTTC  342

seq1  CTACCTCTGCCTCCCACGTACTGGGATTAAAATCGTGGTCCACCACACCC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCTGCCTCCCACGTACTGGGATTAAAATCGTGGTCCACCACACCC  392

seq1  AGCTTTCTCTAACTTCCTAATCTGTAAAATAAGCACCAGAGATTGACGTG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTCTAACTTCCTAATCTGTAAAATAAGCACCAGAGATTGACGTG  442

seq1  TAAATCTTCTATCTATTCCTCAAGGAAAACTTCATATGGTCCAGGACTTC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTCTATCTATTCCTCAAGGAAAACTTCATATGGTCCAGGACTTC  492

seq1  ATTAACTTTCGTCAGCATTATCAGTTGTTCCCAAAGAGTCACCAGAGAAG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTTTCGTCAGCATTATCAGTTGTTCCCAAAGAGTCACCAGAGAAG  542

seq1  AAACATCAGTGTCTGCTAAGAACTTAAAAAATTTTTTTTATTTGTGTTTA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCAGTGTCTGCTAAGAACTTAAAAAATTTTTTTTATTTGTGTTTA  592

seq1  TATATTTCTTACCTTTATATACACTTTAGGGACTAAACTCAGGCCACCAG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCTTACCTTTATATACACTTTAGGGACTAAACTCAGGCCACCAG  642

seq1  GCACACGGAGCACATGCTTTAGCTGTCCCTCCAGCCCTTCCCTCCAAGAA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGGAGCACATGCTTTAGCTGTCCCTCCAGCCCTTCCCTCCAAGAA  692

seq1  TTAAAAAAAAAAAAAAAAAAGACCCAGACCTTGTAGTCAATAAAAACTTG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAAAAAAGACCCAGACCTTGTAGTCAATAAAAACTTG  742

seq1  GGTAAATATCTTCAGTATTTAGCTTCAGACCCTGGGACAAGTTAACATAT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATATCTTCAGTATTTAGCTTCAGACCCTGGGACAAGTTAACATAT  792

seq1  TTTACATATCAAAGCGGACCTGGTCTCCAGGTTCTCCCAGCTTCCCACAG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATATCAAAGCGGACCTGGTCTCCAGGTTCTCCCAGCTTCCCACAG  842

seq1  TCCCTATCTGGCACACCCTGCCCCCAACCCTGAAATTTCTAGCCCAGGGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATCTGGCACACCCTGCCCCCAACCCTGAAATTTCTAGCCCAGGGG  892

seq1  ATGGGCTGCCCTTCCCCCAGAGGCTCTTCCTTATGTAATTCAGACATTTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGCCCTTCCCCCAGAGGCTCTTCCTTATGTAATTCAGACATTTT  942

seq1  GGTCTTTCTGCTTTTTCTTTCCTCCCACATTTCCCCTTCTCTTCTCTCCT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTCTGCTTTTTCTTTCCTCCCACATTTCCCCTTCTCTTCTCTCCT  992

seq1  GGTGTATACCCCTTCTCTCTTTCTTTCCTCCAACCTCTGCCCATGGTGAC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATACCCCTTCTCTCTTTCTTTCCTCCAACCTCTGCCCATGGTGAC  1042

seq1  TTCCCTGGCCTTGGGGCCAGTGAATTC  1062
      |||||||||||||||||||||||||||
seq2  TTCCCTGGCCTTGGGGCCAGTGAATTC  1069