BAC Information

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BAC

Clone NameB6Ng01-181J05
Chromosome13 (Build37)
Map Location 55,815,267 - 55,949,301
singlet/doubletdoublet
Overlap gene2310047H23Rik, Pcbd2, Catsper3, Pitx1
Upstream geneBC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik
Downstream geneH2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181J05.bB6Ng01-181J05.g
ACCGA007699GA007700
length1,140938
definitionB6Ng01-181J05.b B6Ng01-181J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,948,157 - 55,949,301)(55,815,267 - 55,816,202)
sequence
gaattcagctgtatcatggtcaacagaggccgagcagctgtgtgccctct
ggctgtcatgggcagccttctgtcccttctatcggtaaaacatccatctc
ttgctcggcctaaagatccagtaagatcttgaagtgtgcttgcctgcaga
aagaactgctgctgcccttgagattagaggctggctgtcttttatccaac
aaggaagagagagccaagagagcactccaggttccatgcctgcttcctcg
cagaaccctgtcgcctggaatcatgggataagagttttatacaatgtaac
agctctgcttgcagtccactccatatggaaactctggacgcgcatgtgag
ttaagccatgaggccagctccaccctctacctccatcagtacatcagaaa
tttggggaggccctaggcaggaccagagtctaagagtttgctctcactta
ccttgaggagactcacccctccttgggatgtggagatgtgagaaaccgct
tcatctcttctagcacctgggaggagggagacagacagaggtcgctaggg
ttcggtgcctggagcatctctctgccatctctacacctaacaggagcagc
agaaagcagcagcaacgcctgggctgagcagggggagacagcggacattt
ataaatgaccctcttagctgtttacaagacaccttctgaaagaaagcaga
ggaggagaaataaacttgaagtagggaccctggcgggagtctgcgatgcg
ctttgataagccagctgcaccagcatttcttccccagattttatggccaa
ctttacagccctgtgtttgggactctttatcaggggccggaaggggggag
caagcaagatcccagacaagaagccttcccccaacaacttctccagcaga
tacaacctcatctggagatcaagatagcctgtgtcccctccagtccggca
gtgtgtccctgtctccccccacccccaacatccagatctggggtagaaca
agacatcctcagtgtggccagtaaacaggcagatcccgccctctcgggaa
accttaacggagaagagtcatgagagtcaaaagcaggagcccatcattaa
gacgttgatgcttgtccagaaaccctcttaaggcaggcag
gaattcatgatgtagcccagactggcttggaacccacagtaattctcctg
ccagaagagggcatcagatctcattatggatggttgtgagccaccatgtg
gttgctgggatttgaattcaggacctcttgaagagcagtcattgctctta
actgctgagccatctctccagcccccctaagtgtcattatcttaggagtc
ccagtgttaaaaccaaccaaccaatttgccagaagtagcaaattatagga
tagacagttacatacacacatacagcagttatgcgaagttcaaatttttt
ttttttttttaaaacttcagtcttcggaccttcggaagagcagtcgggtg
ctcttacccactgagccatctcaccagcccgcgaagttcaaatttaactg
gatctatcctctgtctggcaacacaagctagtgcaacatgctgaagtaat
acatcagactatctgtgatttcccaaggttctgtccctcctccattgtgc
acaagtttcttggcctttttgtctcttgaaatgaaaggtattaactccgc
acacaggttcagtacgtgtcgcaagcagcgaggagttctcatgggaatgg
ctattgatggctgctcgaatcctactttgatacttgttccccaaaagcgg
cttccagtacaggtcgcacaggcctggctagaggccgaccgcccgactcc
aagatggcgtctgcagcgtcggccaggagtcaagatggcggcccgcggcc
acgcctgcgctctgggctctcctccccgtagtctccctggggcggggggt
gcgactcccggttgccggtgcgccgattttcttccaccgcggtggctgtc
gccgcggctccctgtcgcgcgccatgcaactccttctgctggtggcaagt
cctgctgtgggtgctgggccttccggtccactgcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55948157_55949301
seq2: B6Ng01-181J05.b_45_1184 (reverse)

seq1  CTGCCTGCCTTTAGGGGGTTCTGGGACAAGGCATCCACGTCTTAATGGAA  50
      ||||||||||| || |||||   |||||| ||||| |||||||||||  |
seq2  CTGCCTGCCTTAAGAGGGTTTCTGGACAA-GCATCAACGTCTTAATG--A  47

seq1  TGGGCT-CTGCTTTTGACTTCTCATGACTCCTCTCCCGTTAAGGTTTCCC  99
      |||||| ||||||||||| ||||||||||| ||| |||||||||||||||
seq2  TGGGCTCCTGCTTTTGAC-TCTCATGACTCTTCT-CCGTTAAGGTTTCCC  95

seq1  GAGAGGGCCGGGATCTGCCTGTTTACT-GCCACACTGAGGAATGTCTTG-  147
      ||||||| ||||||||||||||||||| |||||||||||| |||||||| 
seq2  GAGAGGG-CGGGATCTGCCTGTTTACTGGCCACACTGAGG-ATGTCTTGT  143

seq1  TCTACCCCAGATCTGGATGTTGGGGGT-GGGGGAGACAGGGACACAACTG  196
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  TCTACCCCAGATCTGGATGTTGGGGGTGGGGGGAGACAGGGACAC-ACTG  192

seq1  CCGGGACTGGAGGGGACACAGGCTATCTTGATCTCCAGATGAGGTTGTAT  246
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CC-GGACTGGAGGGGACACAGGCTATCTTGATCTCCAGATGAGGTTGTAT  241

seq1  CTGCTGGAGAAGTTGTTGGGGGAAGGCTTCTTGTCTGGGATCTTGCTTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGAGAAGTTGTTGGGGGAAGGCTTCTTGTCTGGGATCTTGCTTGC  291

seq1  TCCCCCCTTCCGGCCCCTGATAAAGAGTCCCAAACACAGGGCTGTAAAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTTCCGGCCCCTGATAAAGAGTCCCAAACACAGGGCTGTAAAGT  341

seq1  TGGCCATAAAATCTGGGGAAGAAATGCTGGTGCAGCTGGCTTATCAAAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATAAAATCTGGGGAAGAAATGCTGGTGCAGCTGGCTTATCAAAGC  391

seq1  GCATCGCAGACTCCCGCCAGGGTCCCTACTTCAAGTTTATTTCTCCTCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGCAGACTCCCGCCAGGGTCCCTACTTCAAGTTTATTTCTCCTCCT  441

seq1  CTGCTTTCTTTCAGAAGGTGTCTTGTAAACAGCTAAGAGGGTCATTTATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCTTTCAGAAGGTGTCTTGTAAACAGCTAAGAGGGTCATTTATA  491

seq1  AATGTCCGCTGTCTCCCCCTGCTCAGCCCAGGCGTTGCTGCTGCTTTCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCGCTGTCTCCCCCTGCTCAGCCCAGGCGTTGCTGCTGCTTTCTG  541

seq1  CTGCTCCTGTTAGGTGTAGAGATGGCAGAGAGATGCTCCAGGCACCGAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTGTTAGGTGTAGAGATGGCAGAGAGATGCTCCAGGCACCGAAC  591

seq1  CCTAGCGACCTCTGTCTGTCTCCCTCCTCCCAGGTGCTAGAAGAGATGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCGACCTCTGTCTGTCTCCCTCCTCCCAGGTGCTAGAAGAGATGAA  641

seq1  GCGGTTTCTCACATCTCCACATCCCAAGGAGGGGTGAGTCTCCTCAAGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTTCTCACATCTCCACATCCCAAGGAGGGGTGAGTCTCCTCAAGGT  691

seq1  AAGTGAGAGCAAACTCTTAGACTCTGGTCCTGCCTAGGGCCTCCCCAAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAGCAAACTCTTAGACTCTGGTCCTGCCTAGGGCCTCCCCAAAT  741

seq1  TTCTGATGTACTGATGGAGGTAGAGGGTGGAGCTGGCCTCATGGCTTAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGTACTGATGGAGGTAGAGGGTGGAGCTGGCCTCATGGCTTAAC  791

seq1  TCACATGCGCGTCCAGAGTTTCCATATGGAGTGGACTGCAAGCAGAGCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGCGCGTCCAGAGTTTCCATATGGAGTGGACTGCAAGCAGAGCTG  841

seq1  TTACATTGTATAAAACTCTTATCCCATGATTCCAGGCGACAGGGTTCTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGTATAAAACTCTTATCCCATGATTCCAGGCGACAGGGTTCTGC  891

seq1  GAGGAAGCAGGCATGGAACCTGGAGTGCTCTCTTGGCTCTCTCTTCCTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCAGGCATGGAACCTGGAGTGCTCTCTTGGCTCTCTCTTCCTTG  941

seq1  TTGGATAAAAGACAGCCAGCCTCTAATCTCAAGGGCAGCAGCAGTTCTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAAAAGACAGCCAGCCTCTAATCTCAAGGGCAGCAGCAGTTCTTT  991

seq1  CTGCAGGCAAGCACACTTCAAGATCTTACTGGATCTTTAGGCCGAGCAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCAAGCACACTTCAAGATCTTACTGGATCTTTAGGCCGAGCAAG  1041

seq1  AGATGGATGTTTTACCGATAGAAGGGACAGAAGGCTGCCCATGACAGCCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATGTTTTACCGATAGAAGGGACAGAAGGCTGCCCATGACAGCCA  1091

seq1  GAGGGCACACAGCTGCTCGGCCTCTGTTGACCATGATACAGCTGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCACACAGCTGCTCGGCCTCTGTTGACCATGATACAGCTGAATTC  1140

seq1: chr13_55815267_55816202
seq2: B6Ng01-181J05.g_64_1001

seq1  GAATTCATGATGTAGCCCAGACTGGCTTGGAACCCACAGTAATTCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATGTAGCCCAGACTGGCTTGGAACCCACAGTAATTCTCCTG  50

seq1  CCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCCACCATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCCACCATGTG  100

seq1  GTTGCTGGGATTTGAATTCAGGACCTCTTGAAGAGCAGTCATTGCTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGGATTTGAATTCAGGACCTCTTGAAGAGCAGTCATTGCTCTTA  150

seq1  ACTGCTGAGCCATCTCTCCAGCCCCCCTAAGTGTCATTATCTTAGGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAGCCATCTCTCCAGCCCCCCTAAGTGTCATTATCTTAGGAGTC  200

seq1  CCAGTGTTAAAACCAACCAACCAATTTGCCAGAAGTAGCAAATTATAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTTAAAACCAACCAACCAATTTGCCAGAAGTAGCAAATTATAGGA  250

seq1  TAGACAGTTACATACACACATACAGCAGTTATGCGAAGTTCAAATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGTTACATACACACATACAGCAGTTATGCGAAGTTCAAATTTTTT  300

seq1  TTTTTTTTTTAAAACTTCAGTCTTCGGACCTTCGGAAGAGCAGTCGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAAACTTCAGTCTTCGGACCTTCGGAAGAGCAGTCGGGTG  350

seq1  CTCTTACCCACTGAGCCATCTCACCAGCCCGCGAAGTTCAAATTTAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCCACTGAGCCATCTCACCAGCCCGCGAAGTTCAAATTTAACTG  400

seq1  GATCTATCCTCTGTCTGGCAACACAAGCTAGTGCAACATGCTGAAGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATCCTCTGTCTGGCAACACAAGCTAGTGCAACATGCTGAAGTAAT  450

seq1  ACATCAGACTATCTGTGATTTCCCAAGGTTCTGTCCCTCCTCCATTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGACTATCTGTGATTTCCCAAGGTTCTGTCCCTCCTCCATTGTGC  500

seq1  ACAAGTTTCTTGGCCTTTTTGTCTCTTGAAATGAAAGGTATTAACTCCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTCTTGGCCTTTTTGTCTCTTGAAATGAAAGGTATTAACTCCGC  550

seq1  ACACAGGTTCAGTACGTGTCGCAAGCAGCGAGGAGTTCTCATGGGAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTTCAGTACGTGTCGCAAGCAGCGAGGAGTTCTCATGGGAATGG  600

seq1  CTATTGATGGCTGCTCGAATCCTACTTTGATACTTGTTCCCCAAAAGCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGATGGCTGCTCGAATCCTACTTTGATACTTGTTCCCCAAAAGCGG  650

seq1  CTTCCAGTACAGGTCGCACAGGCCTGGCTAGAGGCCGACCGCCCGACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTACAGGTCGCACAGGCCTGGCTAGAGGCCGACCGCCCGACTCC  700

seq1  AAGATGGCGTCTGCAGCGTCGGCCAGGAGTCAAGATGGCGGCCCGCGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCGTCTGCAGCGTCGGCCAGGAGTCAAGATGGCGGCCCGCGGCC  750

seq1  ACGCCTGCGCTCTGGGCTCTCCTCCCCGTAGTCTCCCTGGGGCGGGGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGCGCTCTGGGCTCTCCTCCCCGTAGTCTCCCTGGGGCGGGGGGT  800

seq1  GCGACT-CCGGTTGCCGGTGCGCCGATTTTCTTCCACCGCGGTGGCTGTC  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTCCCGGTTGCCGGTGCGCCGATTTTCTTCCACCGCGGTGGCTGTC  850

seq1  GCCGCGGCTCCCTGTCGCGCGCCATGCAACTCC-TCTGCTGGTGGCAAGT  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCGCGGCTCCCTGTCGCGCGCCATGCAACTCCTTCTGCTGGTGGCAAGT  900

seq1  CCTGCTGTGGGTGCTGGGCCTTCCGGCCCACGGCCTGG  936
      |||||||||||||||||||||||||| |||| ||||||
seq2  CCTGCTGTGGGTGCTGGGCCTTCCGGTCCACTGCCTGG  938