BAC Information

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BAC

Clone NameB6Ng01-181M20
Chromosome13 (Build37)
Map Location 89,650,937 - 89,749,542
singlet/doubletdoublet
Overlap geneHapln1, EG667266
Upstream geneEG435375, Edil3
Downstream geneVcan, LOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181M20.bB6Ng01-181M20.g
ACCGA007864GA007865
length1,159634
definitionB6Ng01-181M20.b B6Ng01-181M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,748,377 - 89,749,542)(89,650,937 - 89,651,567)
sequence
gaattcaatttacaacagcactgtttgagtgaaaccccacattttctttg
gatgtatacttttgtgtaatttgcatatcctaacttataacttcatgcat
tgtcatggcttaagtacctgaaagaaaggttctatttttacttctaatat
tttatctaggtaatatatcatgatagttatggtttcatggacttccatct
gctctatactttccacacacataactctatatttatagagcattttttat
tatagttattacagagctttaaatgcaaccatggtcaattcaggaaacag
atttatttatgttatgttcatggggggaaatctacataaaaacattgatg
acagcatactagccatgttgtacttggattattatgctaaggcctactca
caagaattcactgtgaaataatgggaaaccagaaatattacttgaatata
aatattggtccctctggggtctctgcaatcataacaagaaactttaattt
aagactggagttgctaatactgaaagtcacttttctgaacctgggcttaa
cttttcacttaaaacctggaggtgtaaagtctgctatgagaatgccagta
ttttatttttgccaaattctaaccagaaaggaaactgacagtgactgtat
ttcctacttgagagactatttagaaatgtatttttccctttcttctataa
ataaaggtcttatttgggcactgtattgtggatacaaacaagaacaactt
tggaagttgagtctttatttcttaggcaagtgtagagttattcattcatt
tgatggtttttgtcatgtaatgtaaataagaaatattaaatagattaaaa
ttatttttataggacaataatgtttcataagctaacataaaatcaagctg
ctacattttacacattttctgtccagcagtttgtcgttttaactgccctg
agtagattctaaatactgcttagcaagggttctttagaatttaatatgat
tcagtaaagctactcaaaaataataaaaacaaggtcttctcagataggta
attgtatagaagtagactctttcatgcttaaagtattatcttgtgttact
tagtagaatatttcatataatgaatgacctagagctctaactggcttatt
atctgcatc

gaattctgtagaagagtgtgaaggattgtaggagccagaagattaaaaga
cactacaagaaaacccacagaatcaatcaacctgagcctgtaggggttca
cagagactgaactgtcaaccaaagaacatgtataggactcacctagacct
tctgcatgtatgttgtgtagcttggtcttcatatgggacttctaacattg
ggagcaggggttacctctgactcttgcctgcattggggccacttttattc
ctattgggttgctttctctagccttactatgaggggaagtacctagtctt
attgcaatttgatatgccatctctggttggtgtccctgggagatctaccc
tttttctgaagggaaacagaggaggaatggatctgaaagagaggatctga
aagaaagggaagataggaatgaggaaggaatggagggaggggacactgta
gccatgataagagagtaataaattgaaaaagagagaaagagagacaggga
ggaggaaaaagaggagaagaagaagaagaagaagaagaagaagaagaaga
agaagaagaagaagaagaagaagaagaagaagaagaagaagagaggagga
ggaagaggaagaggaagaggaagaggaagaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89748377_89749542
seq2: B6Ng01-181M20.b_46_1204 (reverse)

seq1  GATGCAGAATAATAAAGCCACAGTTAGAACTCCTAGGTCAACTCATTTAT  50
      ||||||| ||||| ||||  |||||||| || ||||||| | ||| ||||
seq2  GATGCAG-ATAAT-AAGC--CAGTTAGAGCT-CTAGGTC-ATTCA-TTAT  43

seq1  ATGAAATA-TCTACTTAAGT-ACAC-AGATAATACTTTAGCAATGAAAGA  97
      |||||||| ||||| ||||| |||| |||||||||||||   ||||||||
seq2  ATGAAATATTCTAC-TAAGTAACACAAGATAATACTTTAAGCATGAAAGA  92

seq1  GTCCTACCTTCTAATTACAATTACCTATCTGAGAAGA-CTTG-TTTTATT  145
      || ||| ||||||  |||||||||||||||||||||| |||| |||||||
seq2  GT-CTA-CTTCTA--TACAATTACCTATCTGAGAAGACCTTGTTTTTATT  138

seq1  ATTTTTGAGTAGCTTTACTGAATCATATTTAAATTCT-AAGAACCTTTGC  194
      ||||||||||||||||||||||||||| ||||||||| ||||||| ||||
seq2  ATTTTTGAGTAGCTTTACTGAATCATA-TTAAATTCTAAAGAACCCTTGC  187

seq1  TAAGCAGTATTTAGAATCTACTCAGGGCAGTTAAAACGACAAACTGCTGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGTATTTAGAATCTACTCAGGGCAGTTAAAACGACAAACTGCTGG  237

seq1  ACAGAAAATGTGTAAAATGTAGCAGCTTGATTTTATGTTAGCTTATGAAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATGTGTAAAATGTAGCAGCTTGATTTTATGTTAGCTTATGAAA  287

seq1  CATTATTGTCCTATAAAAATAATTTTAATCTATTTAATATTTCTTATTTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGTCCTATAAAAATAATTTTAATCTATTTAATATTTCTTATTTA  337

seq1  CATTACATGACAAAAACCATCAAATGAATGAATAACTCTACACTTGCCTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATGACAAAAACCATCAAATGAATGAATAACTCTACACTTGCCTA  387

seq1  AGAAATAAAGACTCAACTTCCAAAGTTGTTCTTGTTTGTATCCACAATAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAAGACTCAACTTCCAAAGTTGTTCTTGTTTGTATCCACAATAC  437

seq1  AGTGCCCAAATAAGACCTTTATTTATAGAAGAAAGGGAAAAATACATTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCAAATAAGACCTTTATTTATAGAAGAAAGGGAAAAATACATTTC  487

seq1  TAAATAGTCTCTCAAGTAGGAAATACAGTCACTGTCAGTTTCCTTTCTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTCTCTCAAGTAGGAAATACAGTCACTGTCAGTTTCCTTTCTGG  537

seq1  TTAGAATTTGGCAAAAATAAAATACTGGCATTCTCATAGCAGACTTTACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTGGCAAAAATAAAATACTGGCATTCTCATAGCAGACTTTACA  587

seq1  CCTCCAGGTTTTAAGTGAAAAGTTAAGCCCAGGTTCAGAAAAGTGACTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGTTTTAAGTGAAAAGTTAAGCCCAGGTTCAGAAAAGTGACTTT  637

seq1  CAGTATTAGCAACTCCAGTCTTAAATTAAAGTTTCTTGTTATGATTGCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTAGCAACTCCAGTCTTAAATTAAAGTTTCTTGTTATGATTGCAG  687

seq1  AGACCCCAGAGGGACCAATATTTATATTCAAGTAATATTTCTGGTTTCCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCAGAGGGACCAATATTTATATTCAAGTAATATTTCTGGTTTCCC  737

seq1  ATTATTTCACAGTGAATTCTTGTGAGTAGGCCTTAGCATAATAATCCAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCACAGTGAATTCTTGTGAGTAGGCCTTAGCATAATAATCCAAG  787

seq1  TACAACATGGCTAGTATGCTGTCATCAATGTTTTTATGTAGATTTCCCCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATGGCTAGTATGCTGTCATCAATGTTTTTATGTAGATTTCCCCC  837

seq1  CATGAACATAACATAAATAAATCTGTTTCCTGAATTGACCATGGTTGCAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACATAACATAAATAAATCTGTTTCCTGAATTGACCATGGTTGCAT  887

seq1  TTAAAGCTCTGTAATAACTATAATAAAAAATGCTCTATAAATATAGAGTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTCTGTAATAACTATAATAAAAAATGCTCTATAAATATAGAGTT  937

seq1  ATGTGTGTGGAAAGTATAGAGCAGATGGAAGTCCATGAAACCATAACTAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGGAAAGTATAGAGCAGATGGAAGTCCATGAAACCATAACTAT  987

seq1  CATGATATATTACCTAGATAAAATATTAGAAGTAAAAATAGAACCTTTCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATATTACCTAGATAAAATATTAGAAGTAAAAATAGAACCTTTCT  1037

seq1  TTCAGGTACTTAAGCCATGACAATGCATGAAGTTATAAGTTAGGATATGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTACTTAAGCCATGACAATGCATGAAGTTATAAGTTAGGATATGC  1087

seq1  AAATTACACAAAAGTATACATCCAAAGAAAATGTGGGGTTTCACTCAAAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACACAAAAGTATACATCCAAAGAAAATGTGGGGTTTCACTCAAAC  1137

seq1  AGTGCTGTTGTAAATTGAATTC  1166
      ||||||||||||||||||||||
seq2  AGTGCTGTTGTAAATTGAATTC  1159


seq1: chr13_89650937_89651567
seq2: B6Ng01-181M20.g_67_700

seq1  GAATTCTGTAGAAGAGTGTGAAGGATTGTAGGAGCCAGAAGATTAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGAAGAGTGTGAAGGATTGTAGGAGCCAGAAGATTAAAAGA  50

seq1  CACTACAAGAAAACCCACAGAATCAATCAACCTGAGCCTGTAGGGGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAAGAAAACCCACAGAATCAATCAACCTGAGCCTGTAGGGGTTCA  100

seq1  CAGAGACTGAACTGTCAACCAAAGAACATGTATAGGACTCACCTAGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTGAACTGTCAACCAAAGAACATGTATAGGACTCACCTAGACCT  150

seq1  TCTGCATGTATGTTGTGTAGCTTGGTCTTCATATGGGACTTCTAACATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGTATGTTGTGTAGCTTGGTCTTCATATGGGACTTCTAACATTG  200

seq1  GGAGCAGGGGTTACCTCTGACTCTTGCCTGCATTGGGGCCACTTTTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGGGTTACCTCTGACTCTTGCCTGCATTGGGGCCACTTTTATTC  250

seq1  CTATTGGGTTGCTTTCTCTAGCCTTACTATGAGGGGAAGTACCTAGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGGTTGCTTTCTCTAGCCTTACTATGAGGGGAAGTACCTAGTCTT  300

seq1  ATTGCAATTTGATATGCCATCTCTGGTTGGTGTCCCTGGGAGATCTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATTTGATATGCCATCTCTGGTTGGTGTCCCTGGGAGATCTACCC  350

seq1  TTTTTCTGAAGGGAAACAGAGGAGGAATGGATCTGAAAGAGAGGATCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGAAGGGAAACAGAGGAGGAATGGATCTGAAAGAGAGGATCTGA  400

seq1  AAGAAAGGGAAGATAGGAATGAGGAAGGAATGGAGGGAGGGGACACTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGGAAGATAGGAATGAGGAAGGAATGGAGGGAGGGGACACTGTA  450

seq1  GCCATGATAAGAGAGTAATAAATTGAAAAAGAGAGAAAGAGAGACAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATAAGAGAGTAATAAATTGAAAAAGAGAGAAAGAGAGACAGGGA  500

seq1  GGAGGAAAAAGAGG---AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  547
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  GGAGGAAAAAGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  550

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGAGGA  600

seq1  GGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAA  631
      ||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAA  634


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