BAC Information

Click to search

BAC

Clone NameB6Ng01-181N19
Chromosome13 (Build37)
Map Location 71,479,926 - 71,621,867
singlet/doubletdoublet
Overlap geneLOC627230
Upstream geneEG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC100042360, Irx1, LOC100042828, LOC100042832, LOC100042836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181N19.bB6Ng01-181N19.g
ACCGA007908GA007909
length1,1031,088
definitionB6Ng01-181N19.b B6Ng01-181N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,620,789 - 71,621,867)(71,479,926 - 71,480,999)
sequence
gaattcatatgagttgtaaatattggtatgtgggtgatgcttacatggac
gactgccttttattgttgcaataaatatctttgaagtttttctataaaat
taaatactgcaatccccatggcaaaatagttatgtttgaatatggcttta
aatgagtaaattgttaaaatacccctcagatgtgtgaagcgctccaacca
tgaagaattggagatgtctatgcctcagccttttctatagctgtagctgt
attttccatgttcaacctgatgttcaatgcctcgtgtgaccagtgggtgc
tggtgggcagagagcttcctggctataccccacattgttgaatcaggaat
ctggggaagtagtgttgacatctcaagttctaatgaactttcctgcttaa
cttttatttatgtctgggattgagaatattggtctttggaaatcaaaagt
atcctcaagggctgttgtgagacagaaggacaccccaccttactcccagt
acagacattcatacctgtaaggaccaggatactcttaaagccctgggaaa
tgttcatgtttctcctgaggctcttgtcacctgagccctagaaaggaggg
cacgaagctgggagtgaaagccacaggcatatgaactataggtaaagaca
atacatggtttattcagaaaggattagtgtctcccagatcctggaggaag
actgaggctgggagcaggcataggctaggccttgagaaatccattttctc
atgcatggtacctgtgccatattcatgagtattatgcccttagagagaca
ttcaagccatggatgttgtctgcctatggcatctggagtgaacccctcag
ctccaggtgccccgactctacatcctcctctgcatccatctgcctcttgt
gcactcgccctctaccagaacacgtggatcagaaaaaaaacaacacaacc
agctaccactgggtcaacaatagaaacaacagcccatcagcaagaagctt
cctccctgcagggtggtgaccattgggcttttggcttagtttcatgatct
caaggggagaaaatctctttctcacttctttatcctctttcaatctgaac
agg

gaattcattccagaaaagaacacaggtgtttcataaccctggcaggggga
tgcctgtacatgtccgagaatgctcactgccaaggttgaaatctagcact
accagaaagcccctatatcagtacaaaatggcaaacttctctgcagggct
tcttcttctctgagcttgcctggggaactcaaagcttccttgcttttccc
tgttgagtgtcacatagccttggttagattagaggctcagcttcctttct
tccaattatgaacctgttcaactagcccctgagattcctggaataccttc
ccatgctaaagatgcatcagtaccttagtcttcagccaacaacctttgct
cacccctcaccctggatattcctacccctttccctaaaactatataaccc
ttgagtcaccccaaataaagttgatctgtctctctgaagctgatcctggg
atgttgtcatttccattagtacttacaggtcatcttaaaccctgttcacg
gactctattccctttatccttatgagccagtagccaatgaccccagggag
aagggagacccataaggtgtgagtgtttactgagttgcagtctgcctgca
gttgctttatgcacagaaagctcaaccctttgtggaaactataggtgaca
tgacttccacaagttgtttatacaaggagaattctgaatgaaggcagaaa
agtgaagggctactgtgacctaatgacattggagacagtttggctctgtg
gtgtaaaatggtgactttctaattcctcctacccaaggagacccttgtgt
cccccatttcagccgttcttgttacttaatctctctgggtctctggacca
tagcacaattgtcttttggctttatagctaacattcacttattaagtgaa
tacatacaaaagtgagtctggggtaacctcactcaggaatgatcattttt
ctagtttcatcttcttaaagggtctgacctatcaccctctgaatatgagt
tattggccaagaagcttcgttgttccttacatgaatcctagcagtgagaa
taggggtgtcacctgacttcttttgcctacttgtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71620789_71621867
seq2: B6Ng01-181N19.b_48_1150 (reverse)

seq1  CCTG-TCAGA-TGAAAGA-GAT-AAGAAGTG-GAAAGAGA-TTTCT-CCC  43
      |||| ||||| ||||||| ||| |||||||| |||||||| ||||| |||
seq2  CCTGTTCAGATTGAAAGAGGATAAAGAAGTGAGAAAGAGATTTTCTCCCC  50

seq1  TGGAGATCATGAAACTA--GCAAAAGCCCAATGGTCA-CACCC-GCAGGG  89
      | |||||||||||||||   ||||||||||||||||| ||||| ||||||
seq2  TTGAGATCATGAAACTAAGCCAAAAGCCCAATGGTCACCACCCTGCAGGG  100

seq1  A-GAAGCT--CTGCTGAT-GGCTGT--GTTCTA-TGTTGA-CCAGTGGTA  131
      | ||||||   ||||||| ||||||   ||||| |||||| |||||||||
seq2  AGGAAGCTTCTTGCTGATGGGCTGTTGTTTCTATTGTTGACCCAGTGGTA  150

seq1  GCTGG-TGTGT--GTTTTTTTCTGATCCACGTG-TCTGGTAGAGGGCGAG  177
      ||||| |||||   ||||||||||||||||||| ||||||||||||||||
seq2  GCTGGTTGTGTTGTTTTTTTTCTGATCCACGTGTTCTGGTAGAGGGCGAG  200

seq1  TGCAC-AGAGGCAGATGGATGCAGAGGAGGATGTAGAGTCGGGGCACCTG  226
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAGAGGCAGATGGATGCAGAGGAGGATGTAGAGTCGGGGCACCTG  250

seq1  GAGCTGAGGGGTTCACTCCAGATGCCATAGGCAGACAACATCCATGGCTT  276
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAGGGGTTCACTCCAGATGCCATAGGCAGACAACATCCATGGCTT  300

seq1  GAATGTCTCTCTAAGGGCATAATACTCATGAATATGGCACAGGTACCATG  326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCTCTCTAAGGGCATAATACTCATGAATATGGCACAGGTACCATG  350

seq1  CATGAGAAAATGGATTTCTCAAGGCCTAGCCTATGCCTGCTCCCAGCCTC  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAAAATGGATTTCTCAAGGCCTAGCCTATGCCTGCTCCCAGCCTC  400

seq1  AGTCTTCCTCCAGGATCTGGGAGACACTAATCCTTTCTGAATAAACCATG  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCTCCAGGATCTGGGAGACACTAATCCTTTCTGAATAAACCATG  450

seq1  TATTGTCTTTACCTATAGTTCATATGCCTGTGGCTTTCACTCCCAGCTTC  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTTTACCTATAGTTCATATGCCTGTGGCTTTCACTCCCAGCTTC  500

seq1  GTGCCCTCCTTTCTAGGGCTCAGGTGACAAGAGCCTCAGGAGAAACATGA  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTCCTTTCTAGGGCTCAGGTGACAAGAGCCTCAGGAGAAACATGA  550

seq1  ACATTTCCCAGGGCTTTAAGAGTATCCTGGTCCTTACAGGTATGAATGTC  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCCAGGGCTTTAAGAGTATCCTGGTCCTTACAGGTATGAATGTC  600

seq1  TGTACTGGGAGTAAGGTGGGGTGTCCTTCTGTCTCACAACAGCCCTTGAG  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGGGAGTAAGGTGGGGTGTCCTTCTGTCTCACAACAGCCCTTGAG  650

seq1  GATACTTTTGATTTCCAAAGACCAATATTCTCAATCCCAGACATAAATAA  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTTTGATTTCCAAAGACCAATATTCTCAATCCCAGACATAAATAA  700

seq1  AAGTTAAGCAGGAAAGTTCATTAGAACTTGAGATGTCAACACTACTTCCC  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGCAGGAAAGTTCATTAGAACTTGAGATGTCAACACTACTTCCC  750

seq1  CAGATTCCTGATTCAACAATGTGGGGTATAGCCAGGAAGCTCTCTGCCCA  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCCTGATTCAACAATGTGGGGTATAGCCAGGAAGCTCTCTGCCCA  800

seq1  CCAGCACCCACTGGTCACACGAGGCATTGAACATCAGGTTGAACATGGAA  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCCACTGGTCACACGAGGCATTGAACATCAGGTTGAACATGGAA  850

seq1  AATACAGCTACAGCTATAGAAAAGGCTGAGGCATAGACATCTCCAATTCT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCTACAGCTATAGAAAAGGCTGAGGCATAGACATCTCCAATTCT  900

seq1  TCATGGTTGGAGCGCTTCACACATCTGAGGGGTATTTTAACAATTTACTC  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTTGGAGCGCTTCACACATCTGAGGGGTATTTTAACAATTTACTC  950

seq1  ATTTAAAGCCATATTCAAACATAACTATTTTGCCATGGGGATTGCAGTAT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGCCATATTCAAACATAACTATTTTGCCATGGGGATTGCAGTAT  1000

seq1  TTAATTTTATAGAAAAACTTCAAAGATATTTATTGCAACAATAAAAGGCA  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTATAGAAAAACTTCAAAGATATTTATTGCAACAATAAAAGGCA  1050

seq1  GTCGTCCATGTAAGCATCACCCACATACCAATATTTACAACTCATATGAA  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCCATGTAAGCATCACCCACATACCAATATTTACAACTCATATGAA  1100

seq1  TTC  1079
      |||
seq2  TTC  1103


seq1: chr13_71479926_71480999
seq2: B6Ng01-181N19.g_69_1156

seq1  GAATTCATTCCAGAAAAGAACACAGGTGTTTCATAACCCTGGCAGGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCAGAAAAGAACACAGGTGTTTCATAACCCTGGCAGGGGGA  50

seq1  TGCCTGTACATGTCCGAGAATGCTCACTGCCAAGGTTGAAATCTAGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTACATGTCCGAGAATGCTCACTGCCAAGGTTGAAATCTAGCACT  100

seq1  ACCAGAAAGCCCCTATATCAGTACAAAATGGCAAACTTCTCTGCAGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAAGCCCCTATATCAGTACAAAATGGCAAACTTCTCTGCAGGGCT  150

seq1  TCTTCTTCTCTGAGCTTGCCTGGGGAACTCAAAGCTTCCTTGCTTTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTCTGAGCTTGCCTGGGGAACTCAAAGCTTCCTTGCTTTTCCC  200

seq1  TGTTGAGTGTCACATAGCCTTGGTTAGATTAGAGGCTCAGCTTCCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGTGTCACATAGCCTTGGTTAGATTAGAGGCTCAGCTTCCTTTCT  250

seq1  TCCAATTATGAACCTGTTCAACTAGCCCCTGAGATTCCTGGAATACCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTATGAACCTGTTCAACTAGCCCCTGAGATTCCTGGAATACCTTC  300

seq1  CCATGCTAAAGATGCATCAGTACCTTAGTCTTCAGCCAACAACCTTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTAAAGATGCATCAGTACCTTAGTCTTCAGCCAACAACCTTTGCT  350

seq1  CACCCCTCACCCTGGATATTCCTACCCCTTTCCCTAAAACTATATAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTCACCCTGGATATTCCTACCCCTTTCCCTAAAACTATATAACCC  400

seq1  TTGAGTCACCCCAAATAAAGTTGATCTGTCTCTCTGAAGCTGATCCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCACCCCAAATAAAGTTGATCTGTCTCTCTGAAGCTGATCCTGGG  450

seq1  ATGTTGTCATTTCCATTAGTACTTACAGGTCATCTTAAACCCTGTTCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTCATTTCCATTAGTACTTACAGGTCATCTTAAACCCTGTTCACG  500

seq1  GACTCTATTCCCTTTATCCTTATGAGCCAGTAGCCAATGACCCCAGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTATTCCCTTTATCCTTATGAGCCAGTAGCCAATGACCCCAGGGAG  550

seq1  AAGGGAGACCCATAAGGTGTGAGTGTTTACTGAGTTGCAGTCTGCCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGACCCATAAGGTGTGAGTGTTTACTGAGTTGCAGTCTGCCTGCA  600

seq1  GTTGCTTTATGCACAGAAAGCTCAACCCTTTGTGGAAACTATAGGTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTATGCACAGAAAGCTCAACCCTTTGTGGAAACTATAGGTGACA  650

seq1  TGACTTCCACAAGTTGTTTATACAAGGAGAATTCTGAATGAAGGCAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCCACAAGTTGTTTATACAAGGAGAATTCTGAATGAAGGCAGAAA  700

seq1  AGTGAAGGGCTACTGTGACCTAATGACATTGGAGACAG-TTGGCTCTGTG  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTGAAGGGCTACTGTGACCTAATGACATTGGAGACAGTTTGGCTCTGTG  750

seq1  GTGTAAAATGGTGACTTTCTAATTCCTCCTACCCAAGGAGACCCTTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAATGGTGACTTTCTAATTCCTCCTACCCAAGGAGACCCTTGTGT  800

seq1  CCCCCA-TTCAGCCGTTCTTGTTACTTAATCTCTCTGGGTCTCTGGACCA  848
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATTTCAGCCGTTCTTGTTACTTAATCTCTCTGGGTCTCTGGACCA  850

seq1  TAGCACAATTGTCTTTT-GCTTTATAGCTAACATTCACTTA-TAAGTGAA  896
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  TAGCACAATTGTCTTTTGGCTTTATAGCTAACATTCACTTATTAAGTGAA  900

seq1  TACATACAAAAGTGAGTCT-GGGTTACCTCACTCAGG-ATGATCA-TTTT  943
      ||||||||||||||||||| |||| |||||||||||| ||||||| ||||
seq2  TACATACAAAAGTGAGTCTGGGGTAACCTCACTCAGGAATGATCATTTTT  950

seq1  CTAGTTCCATCTTCTT-AAGGGTCTGACCTA-CACCCTCTGAATATGAGT  991
      |||||| ||||||||| |||||||||||||| ||||||||||||||||||
seq2  CTAGTTTCATCTTCTTAAAGGGTCTGACCTATCACCCTCTGAATATGAGT  1000

seq1  TA-TGGCCAAGTAGCTT-GGTGTTCC-TATATGAATCTTAGCAGTGAGAA  1038
      || |||||||| ||||| | |||||| || ||||||| ||||||||||||
seq2  TATTGGCCAAGAAGCTTCGTTGTTCCTTACATGAATCCTAGCAGTGAGAA  1050

seq1  TAGGGGTGTCA-CTGAC-TCTTTTGCCTACTTGTGGGA  1074
      ||||||||||| ||||| ||||||||||||||||||||
seq2  TAGGGGTGTCACCTGACTTCTTTTGCCTACTTGTGGGA  1088


| Home | SequenceCutter | Blast | Download |