BAC Information

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BAC

Clone NameB6Ng01-181P20
Chromosome13 (Build37)
Map Location 12,953,291 - 12,954,302
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3
Downstream geneLOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181P20.bB6Ng01-181P20.g
ACCGA008004GA008005
length8041,106
definitionB6Ng01-181P20.b B6Ng01-181P20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccacttaacccatctgatcctgggctttttttttttttttttt
tttggttgggagactattaatgactgcttctacttctttaggggttatgg
gactttttagatggtttctgacactgttgtaaccttggtacctggtatgt
gtctagaaagttttccatttcatccagattttccagttttgttgagtata
aacttttgtagtaggatctgatgatttttttgaattttcactgtttctgt
tgttatgtctcccttttcatttctgattttattaatttggaaactgtctc
tgtgacctctgattagtctggctaaaggtttttctatctggttgattttc
tcgaataaccagctcctggttaaatgattattttgtatagttctgtttgt
ttctaatttgttgatttcagccttgagtttgattatttcctgatgtctac
tcctctcgggtgtattagcttctttttgttctagagctttcaggtgtgct
gtcaagctgcttgtgtaagctctctccagtttctttttagaggcacatac
agccatatgttttcctcttaccactactttcattgtgtcccataagtttg
agtatgttttacattcattttcattaaattctaaatgtctttaatttctt
cctttgtttcttcttactaagttatcattcagttgagagttgttcagctt
ccatgtatatgtgggttttcttttttttttttctttttttttctttttaa
attgaaagatcagccttagcctatgttgattctgataggggtgggatggg
agta
gaattctcctctgaagaaacagacttggaggaggaagcagctcgttatga
gagaaaaaagtaccagccagataaaatgctagctaatcagttaaggaaaa
agccaaaagcggctggcgaaggccagcatgctgttcagcctccaggcagt
cggcttcaaggtcatagtgcacctccgccctatgcggaggccccgccctg
cataagccgtcagctctgcgcagagaggcaatggacagagaggcaatgcg
cagactcgttcattcctagagaggaacaaaggaaaatgcaacaggcattt
ccggtctttgaaggagccgagggtgggcatgtccatgctccggtagaatt
tgtgcagattaaagagcttgccgagtcggtccgtaaatatggaaccaatg
ctaattttaccttggtgcagttagacaggcttgccggcatggcactaact
cctgccgactggcaaatgattgcaaaagccgctctccctagtatgggcaa
atatatggaatggagagctctatggcaagaggctgcacaagtgcaggcct
gagcaaacgctgctgctttgactccagagcagagagattggacttttggt
aggggtaaacccccgtggcggagaaaaagcctcacatgtgattcaacatt
gccttgaggcatggagtgcttgggggaaacccaaactccttaagactgat
aatggaccagcttatacacatcaaaaattccagcagttctgccgtcagat
ggacgtgacccacctgactggacttccatacaaccctcaaggacagggta
ttgttgagcgtgcgcatcgcaccctcaaatcctatctattaaaacagaaa
gggggaggaggctctacaccgagtaccaagagtgtctgtgtctatggcac
tctttacactcaatttttttaaatcctgatgctcatggccatactgcggc
tgaacgtcattgttcagagcagaataggcccaatgagaatgttaaatgga
aaaatgtcctgaataataatgcttgaccgggatctatttgataagattct
gcgggagctgtttgtgtttcacagaaatgaagacaaccattggaacccag
aaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12953291_12954302
seq2: B6Ng01-181P20.g_169_1173

seq1  GCCAAAAGCGGCTGGCGAAGGCCAGCATGCTGTTCAGCCTCCAGGCAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGCGGCTGGCGAAGGCCAGCATGCTGTTCAGCCTCCAGGCAGTC  50

seq1  GGCTTCAAGGTCATAGTGCACCTCCGCCCTATGCGGAGGCCCCGCCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAAGGTCATAGTGCACCTCCGCCCTATGCGGAGGCCCCGCCCTGC  100

seq1  ATAAGCCGTCAGCTCTGCGCAGAGAGGCAATGGACAGAGAGGCAATGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCGTCAGCTCTGCGCAGAGAGGCAATGGACAGAGAGGCAATGCGC  150

seq1  AGACTCGTTCATTCCTAGAGAGGAACAAAGGAAAATGCAACAGGCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCGTTCATTCCTAGAGAGGAACAAAGGAAAATGCAACAGGCATTTC  200

seq1  CGGTCTTTGAAGGAGCCGAGGGTGGGCATGTCCATGCTCCGGTAGAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTTTGAAGGAGCCGAGGGTGGGCATGTCCATGCTCCGGTAGAATTT  250

seq1  GTGCAGATTAAAGAGCTTGCCGAGTCGGTCCGTAAATATGGAACCAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATTAAAGAGCTTGCCGAGTCGGTCCGTAAATATGGAACCAATGC  300

seq1  TAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGGCATGGCACTAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGGCATGGCACTAACTC  350

seq1  CTGCCGACTGGCAAATGATTGCAAAAGCCGCTCTCCCTAGTATGGGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGACTGGCAAATGATTGCAAAAGCCGCTCTCCCTAGTATGGGCAAA  400

seq1  TATATGGAATGGAGAGCTCTATGGCAAGAGGCTGCACAAGTGCAGGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGAATGGAGAGCTCTATGGCAAGAGGCTGCACAAGTGCAGGCCTG  450

seq1  AGCAAACGCTGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACGCTGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTTGGTA  500

seq1  GGGGTAAACCCCCGTGGCGGAGAAAAAGCCTCACATGTGATTCAACATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAAACCCCCGTGGCGGAGAAAAAGCCTCACATGTGATTCAACATTG  550

seq1  CCTTGAGGCATGGAGTGCTTGGGGGAAACCCAAACTCCTTAAGACTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGCATGGAGTGCTTGGGGGAAACCCAAACTCCTTAAGACTGATA  600

seq1  ATGGACCAGCTTATACACATCAAAAATTCCAGCAGTTCTGCCGTCAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCAGCTTATACACATCAAAAATTCCAGCAGTTCTGCCGTCAGATG  650

seq1  GACGTGACCCACCTGACTGGACTTCCATACAACCCTCAAGGACAGGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGACCCACCTGACTGGACTTCCATACAACCCTCAAGGACAGGGTAT  700

seq1  TGTTGAGCGTGCGCATCGCACCCTCAAATCCTATCTATTAAAACAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGCGTGCGCATCGCACCCTCAAATCCTATCTATTAAAACAGAAAG  750

seq1  GGGGAGGAGGCTCTACACCGAGTACCAAGAGTGTCTGTGTCTATGGCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAGGCTCTACACCGAGTACCAAGAGTGTCTGTGTCTATGGCACT  800

seq1  CTTTACACTCAA-TTTTTTAAATCTTGATGCTCATGGCCATACTGCGGCT  849
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  CTTTACACTCAATTTTTTTAAATCCTGATGCTCATGGCCATACTGCGGCT  850

seq1  GAACGTCATTGTTCAGAGCCAGATAGGCCCAATGAGATGGTTAAATGGAA  899
      |||||||||||||||||||   |||||||||||||||  |||||||||||
seq2  GAACGTCATTGTTCAGAGCAGAATAGGCCCAATGAGAATGTTAAATGGAA  900

seq1  AAATGTCCTTGATAATAAATGGTATGGCCCGGATCCTATTTTGATAAGA-  948
      |||||||||  ||||| |||| | || || |||| ||| |||||||||| 
seq2  AAATGTCCTGAATAAT-AATGCT-TGACCGGGAT-CTA-TTTGATAAGAT  946

seq1  TCTCGGGGAGCTGTTTGTGTTTTTCCACAG-AATGAAGACAACCCATTTT  997
      |||  |||||||||||||||||   ||||| |||||||||||||    ||
seq2  TCTGCGGGAGCTGTTTGTGTTT---CACAGAAATGAAGACAACC---ATT  990

seq1  GGATACCAGAAATAC  1012
      |||  ||||||||||
seq2  GGAACCCAGAAATAC  1005