BAC Information

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BAC

Clone NameB6Ng01-182F21
Chromosome13 (Build37)
Map Location 54,827,293 - 54,974,367
singlet/doubletdoublet
Overlap geneBC040758, Gprin1, Sncb, Eif4e1b, Tspan17
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44
Downstream geneUnc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182F21.bB6Ng01-182F21.g
ACCGA008277GA008278
length865810
definitionB6Ng01-182F21.b B6Ng01-182F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,973,512 - 54,974,367)(54,827,293 - 54,828,098)
sequence
gaattcaggtaaacatgtagcgtaacatggcagaagtatatttagggcca
tttcaggaactgtggccggagagaaggatgagagtttactcccaaaagaa
agagcaatgttcttgaagagttctccatgtcttagaagagatagagacaa
cagctctggggttatacattgaagactgtatgtataggccaggagagtag
gagttccaagagaggggaggaaaggaaagaatgtggctgaatgtgggtca
tggaaagagaggctgaaggagagagggaggtcaagactggcctgagagtg
ggcaagcatccccagagaaggttgctgagctaggtcagggagggagcact
gaaggcaggcaggcggagtgacccctcagagtgacaagatgcagtgtggc
tctgccagtgccagggaacaaagggacatggggcttgcacccaaactatg
ccagaggagtgcctttctgagcctggtaaggaaggtgcatgtgccaggtc
aggtccaacaggagagtctgccatgccctccttactgcccctaagtcccc
agcaacatctggccctgcttcagtaagctggtaatgacacggagtttcca
gtgtgcgaacacagtgcggctgccacagtgacattgcacactgagccctt
tgctgtggctcccagtttctcaccttactcctgctgcccagcaccgcccc
ctctccccgcctggacttggctaatcttcttggtaaagtgatgtttttca
tcacggtggggaggaaggccgcccgcttctccaccctcagcaagtcacac
acccctgggctgtgcgccctccattattcatgggttctcagaatctccac
cgaaaggcggctggg
gaattctctgtgtgggagagagttccaggtatgtgccctcttggctggct
ggggtccatacctgggctaactgtgcggatgggagggaaatattatccta
gcaccttggctacatgcaggatgctcctgcaggtatcatcctttggtgag
gcacaacttaggggaaggggaccctggaggagaggtgtgtttatatccca
tctctaacaccaaacagtaaggcccatgctaagagctctgtaattagaac
cagcctggagtgcccgaggcctgcacaggtgtccctccaagctctgtcct
ctgtccacaggagcatgggtgggcacagtgaaggcctgggatgctgacca
gacggcagccaacaaccgcatcagcttcagcttgtctgggactggcgcca
acaattttatcctccaaggcaacgtgctggaacaagggtgggcagagggt
agcctctggctgctcccggatgtgagactggattacgagacacagaagtt
cttccacctgacagtgagtgctgagaacccaggcccccagggcctcgatt
ctacagccaatgtcaccgtcacggtgatggatgtgaatgatgagccgccc
accctggatgcagcctcactccaggccatctctgtgactgagaatggctc
tgagcatggccaggtgactcgggtgatagcccaggatgtggatactgctg
cgttgctgaggatagagctggtggacgtcatctgcaccaaggctggggtt
gacgtgggcagcgtgttgtcacggctgggttctctgtggatggcaaacgg
cctctgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54973512_54974367
seq2: B6Ng01-182F21.b_46_910 (reverse)

seq1  CCCAG-CGCCTTTCGCT-GAGA-TCTGAG-AGCCATGAATAATGGAGGGC  46
      ||||| ||||||||| | |||| |||||| | ||||||||||||||||||
seq2  CCCAGCCGCCTTTCGGTGGAGATTCTGAGAACCCATGAATAATGGAGGGC  50

seq1  GCACAGCCCA-GGGTGTGTGACTTGCTGAGGGTGGAGAAGC-GGCGGCC-  93
      |||||||||| |||||||||||||||||||||||||||||| ||||||| 
seq2  GCACAGCCCAGGGGTGTGTGACTTGCTGAGGGTGGAGAAGCGGGCGGCCT  100

seq1  TCCT-CCCACCGTGATG-AAAACATCACTTTACCAAGAAGATTAGCCAAG  141
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCTCCCCACCGTGATGAAAAACATCACTTTACCAAGAAGATTAGCCAAG  150

seq1  TCCAGGCGGGGAGAGGGGGCGGTGCTGGGCAGCAGGAGTAAGGTGAGAAA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCGGGGAGAGGGGGCGGTGCTGGGCAGCAGGAGTAAGGTGAGAAA  200

seq1  CTGGGAGCCACAGCAAAGGGCTCAGTGTGCAATGTCACTGTGGCAGCCGC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGCCACAGCAAAGGGCTCAGTGTGCAATGTCACTGTGGCAGCCGC  250

seq1  ACTGTGTTCGCACACTGGAAACTCCGTGTCATTACCAGCTTACTGAAGCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTCGCACACTGGAAACTCCGTGTCATTACCAGCTTACTGAAGCA  300

seq1  GGGCCAGATGTTGCTGGGGACTTAGGGGCAGTAAGGAGGGCATGGCAGAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGATGTTGCTGGGGACTTAGGGGCAGTAAGGAGGGCATGGCAGAC  350

seq1  TCTCCTGTTGGACCTGACCTGGCACATGCACCTTCCTTACCAGGCTCAGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTTGGACCTGACCTGGCACATGCACCTTCCTTACCAGGCTCAGA  400

seq1  AAGGCACTCCTCTGGCATAGTTTGGGTGCAAGCCCCATGTCCCTTTGTTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTCCTCTGGCATAGTTTGGGTGCAAGCCCCATGTCCCTTTGTTC  450

seq1  CCTGGCACTGGCAGAGCCACACTGCATCTTGTCACTCTGAGGGGTCACTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACTGGCAGAGCCACACTGCATCTTGTCACTCTGAGGGGTCACTC  500

seq1  CGCCTGCCTGCCTTCAGTGCTCCCTCCCTGACCTAGCTCAGCAACCTTCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCCTGCCTTCAGTGCTCCCTCCCTGACCTAGCTCAGCAACCTTCT  550

seq1  CTGGGGATGCTTGCCCACTCTCAGGCCAGTCTTGACCTCCCTCTCTCCTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATGCTTGCCCACTCTCAGGCCAGTCTTGACCTCCCTCTCTCCTT  600

seq1  CAGCCTCTCTTTCCATGACCCACATTCAGCCACATTCTTTCCTTTCCTCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTCTTTCCATGACCCACATTCAGCCACATTCTTTCCTTTCCTCC  650

seq1  CCTCTCTTGGAACTCCTACTCTCCTGGCCTATACATACAGTCTTCAATGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTGGAACTCCTACTCTCCTGGCCTATACATACAGTCTTCAATGT  700

seq1  ATAACCCCAGAGCTGTTGTCTCTATCTCTTCTAAGACATGGAGAACTCTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCCAGAGCTGTTGTCTCTATCTCTTCTAAGACATGGAGAACTCTT  750

seq1  CAAGAACATTGCTCTTTCTTTTGGGAGTAAACTCTCATCCTTCTCTCCGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACATTGCTCTTTCTTTTGGGAGTAAACTCTCATCCTTCTCTCCGG  800

seq1  CCACAGTTCCTGAAATGGCCCTAAATATACTTCTGCCATGTTACGCTACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTCCTGAAATGGCCCTAAATATACTTCTGCCATGTTACGCTACA  850

seq1  TGTTTACCTGAATTC  856
      |||||||||||||||
seq2  TGTTTACCTGAATTC  865

seq1: chr13_54827293_54828098
seq2: B6Ng01-182F21.g_66_875

seq1  GAATTCTCTGTGTGGGAGAGAGTTCCAGGTATGTGCCCTCTTGGCTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGTGGGAGAGAGTTCCAGGTATGTGCCCTCTTGGCTGGCT  50

seq1  GGGGTCCATACCTGGGCTAACTGTGCGGATGGGAGGGAAATATTATCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCATACCTGGGCTAACTGTGCGGATGGGAGGGAAATATTATCCTA  100

seq1  GCACCTTGGCTACATGCAGGATGCTCCTGCAGGTATCATCCTTTGGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTGGCTACATGCAGGATGCTCCTGCAGGTATCATCCTTTGGTGAG  150

seq1  GCACAACTTAGGGGAAGGGGACCCTGGAGGAGAGGTGTGTTTATATCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAACTTAGGGGAAGGGGACCCTGGAGGAGAGGTGTGTTTATATCCCA  200

seq1  TCTCTAACACCAAACAGTAAGGCCCATGCTAAGAGCTCTGTAATTAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACACCAAACAGTAAGGCCCATGCTAAGAGCTCTGTAATTAGAAC  250

seq1  CAGCCTGGAGTGCCCGAGGCCTGCACAGGTGTCCCTCCAAGCTCTGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGAGTGCCCGAGGCCTGCACAGGTGTCCCTCCAAGCTCTGTCCT  300

seq1  CTGTCCACAGGAGCATGGGTGGGCACAGTGAAGGCCTGGGATGCTGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCACAGGAGCATGGGTGGGCACAGTGAAGGCCTGGGATGCTGACCA  350

seq1  GACGGCAGCCAACAACCGCATCAGCTTCAGCTTGTCTGGGACTGGCGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCAGCCAACAACCGCATCAGCTTCAGCTTGTCTGGGACTGGCGCCA  400

seq1  ACAATTTTATCCTCCAAGGCAACGTGCTGGAACAAGGGTGGGCAGAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTATCCTCCAAGGCAACGTGCTGGAACAAGGGTGGGCAGAGGGT  450

seq1  AGCCTCTGGCTGCTCCCGGATGTGAGACTGGATTACGAGACACAGAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGGCTGCTCCCGGATGTGAGACTGGATTACGAGACACAGAAGTT  500

seq1  CTTCCACCTGACAGTGAGTGCTGAGAACCCAGGCCCCCAGGGCCTCGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCTGACAGTGAGTGCTGAGAACCCAGGCCCCCAGGGCCTCGATT  550

seq1  CTACAGCCAATGTCACCGTCACGGTGATGGATGTGAATGATGAGCCGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCAATGTCACCGTCACGGTGATGGATGTGAATGATGAGCCGCCC  600

seq1  ACCCTGGATGCAGCCTCACTCCAGGCCATCTCTGTGACTGAGAATGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGATGCAGCCTCACTCCAGGCCATCTCTGTGACTGAGAATGGCTC  650

seq1  TGAGCATGGCCAGGTGACTCGGGTGATAGCCCAGGATGTGGATACTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGGCCAGGTGACTCGGGTGATAGCCCAGGATGTGGATACTGCTG  700

seq1  CGTTGCTGAGGATAGAGCTGGTGGACGTCATCTGCACCAAGGCTGGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCTGAGGATAGAGCTGGTGGACGTCATCTGCACCAAGGCTGGGGTT  750

seq1  GACGTGGGCAGCGTG-TGTCACGGCT-GGTTCTCTGTGGATGGC-AACGG  797
      ||||||||||||||| |||||||||| ||||||||||||||||| |||||
seq2  GACGTGGGCAGCGTGTTGTCACGGCTGGGTTCTCTGTGGATGGCAAACGG  800

seq1  -CTCTGTGTA  806
       |||||||||
seq2  CCTCTGTGTA  810