BAC Information

Click to search

BAC

Clone NameB6Ng01-182J14
Chromosome13 (Build37)
Map Location 71,504,541 - 71,505,644
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC627230, LOC100042360, Irx1, LOC100042828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182J14.b
ACCGA008446
length1,135
definitionB6Ng01-182J14.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccggataccgacattctcttgccgcctcctcctgaaatgcggaaa
gattttctgtgcaatggccatggccccatagatggtgaaaggagggggta
cagggttaatgctcacctctctgatccagaatacaagaagctggattttc
accagttttaattttttttccatcccaaatatttttatacccacttgtgg
aatatgaaggtgctccattgtgatcttgttgaattgacttgaatgccgtt
caggtttgcaatcatgttatgctctcaaaattatgtctaatgaaacaaca
acttttctaattttttttcaatttgtttatgaaaaagttacacataacaa
acatcatgttcgggctgaagacagttaattctatggtcacactttatggc
aaaggcaataaatcacatttatagtggaaaacctgacacaatatattctg
tgctcactcagtccacaacagagaggacttaaagagttttgaaatgtttt
caagtgaaagcatcaacagcagtacattcaaagccacttccaatgaattc
tgtctcctgaaatcaccacaaaaaaataacaggtaactttcatatcctgg
ccacatgtattcaatcttctcctaagtattttcaccccaacatgacagac
ttttcttccagtgcatctcatgtgtgctactgtgttttataagattgcac
ctagagcttgctcatggacctgggacagagctttctaaagcttcctgaga
gcacagtggtaacctaatttctgtctactctaagaggaagctcagactcc
aatagggatgttgtatggaggaggctgggaaaagctggtgtggattctag
gttcctcggtttgtagatgccgctggcttccttcggtatgggtattcttc
taccttacccatgatgaacaaaatagtatagaggataattatggctgagc
atgctcactgtcttgctgacttccagaactccaattcaacattctataac
tggaagctaaggaatttctgctgggatgcactatgaccacaaacagaatt
acgctacatgtgctttggctgaagaaggagcttcataacttataacaaca
atcaacaagaacttgtattccttctcggtggaatt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71504541_71505644
seq2: B6Ng01-182J14.b_71_1175

seq1  CTCCTAAGCCTGAAATGCACAAAGATTTTCTGTGCGATGGCCAAGGCCAC  50
      |||||   ||||||||||  ||||||||||||||| ||||||| |||| |
seq2  CTCCT---CCTGAAATGCGGAAAGATTTTCTGTGCAATGGCCATGGCCCC  47

seq1  ATATATGGCAAAATGATGGGGTACAGTTTTAAGGCTCACATCTCTCAGTC  100
      ||| ||||  ||| || |||||||||  |||| |||||| ||||| |  |
seq2  ATAGATGGTGAAAGGAGGGGGTACAGGGTTAATGCTCACCTCTCTGATCC  97

seq1  AAAAAAGAAAAAGCAACATTCAGACCAGTTTTAATTTTTTTTCCAAATAA  150
      | || | || ||||   |||   ||||||||||||||||||||||    |
seq2  AGAATACAAGAAGCTGGATTTTCACCAGTTTTAATTTTTTTTCCATCCCA  147

seq1  AATATTTTTATACCCAATTATGGAATATGTAGCTGCTCCATTGTGATATT  200
      |||||||||||||||| || ||||||||| || |||||||||||||| ||
seq2  AATATTTTTATACCCACTTGTGGAATATGAAGGTGCTCCATTGTGATCTT  197

seq1  TTTGAATTGTCTTGAATGCCATTCAGGTTTGCAATCATGTTATGCTCTCA  250
       |||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  GTTGAATTGACTTGAATGCCGTTCAGGTTTGCAATCATGTTATGCTCTCA  247

seq1  GAAATTATGTCTAATGAAAGAACAACTTTTCTAATTTTTTTTCAATTTGT  300
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  -AAATTATGTCTAATGAAACAACAACTTTTCTAATTTTTTTTCAATTTGT  296

seq1  TTATGAAAAAGTTACACATAACAAACATCAGTTTCGGGCTGAAGACAGTT  350
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  TTATGAAAAAGTTACACATAACAAACATCATGTTCGGGCTGAAGACAGTT  346

seq1  AATTCTATGGTCACACTTTATGGCAAAGGCAATAAATCACATTTATAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATGGTCACACTTTATGGCAAAGGCAATAAATCACATTTATAGTG  396

seq1  GAAAACCTGACACAATATATTCTGTGCTCACTCAGTCCACAACAGAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTGACACAATATATTCTGTGCTCACTCAGTCCACAACAGAGAGG  446

seq1  ACTTAAAGAGTTTTGAAATGTTTTCAAGTGAAAGCATCAACAGCAGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGAGTTTTGAAATGTTTTCAAGTGAAAGCATCAACAGCAGTACA  496

seq1  TTCAAAGCCACTTCCAATGAATTCTGTCTCCTGAAATCACCACAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCCACTTCCAATGAATTCTGTCTCCTGAAATCACCACAAAAAAA  546

seq1  TAACAGGTAACTTTCATATCCTGGCCACATGTATTCAATCTTCTCCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTAACTTTCATATCCTGGCCACATGTATTCAATCTTCTCCTAAG  596

seq1  TATTTTCACCCCAACATGACAGACTTTTCTTCCAGTGCATCTCATGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCACCCCAACATGACAGACTTTTCTTCCAGTGCATCTCATGTGTG  646

seq1  CTACTGTGTTTTATAAGATTGCACCTAGAGCTTGCTCATGGACCTGGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGTTTTATAAGATTGCACCTAGAGCTTGCTCATGGACCTGGGAC  696

seq1  AGAGCTTTCTAAAGCTTCCTGAGAGCACAGTGGTAACCTAA-TTCTGTCT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAGCTTTCTAAAGCTTCCTGAGAGCACAGTGGTAACCTAATTTCTGTCT  746

seq1  ACTCTAAGAGGAAGCTCAGACTCCAAATAGGGATGTTGTATGGAGGAGGC  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTCTAAGAGGAAGCTCAGACTCC-AATAGGGATGTTGTATGGAGGAGGC  795

seq1  TGGGAAAAGCTGGTGTGGATTCTAGGTTCCTCGGTTTGTAGATGCCGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAGCTGGTGTGGATTCTAGGTTCCTCGGTTTGTAGATGCCGCTG  845

seq1  GCTTCCTCTGTTATGGGTATTCTTCTACCTTACCCCAAGAAGAACAAAAT  899
      |||||||  | ||||||||||||||||||||| |||| || |||||||||
seq2  GCTTCCTTCGGTATGGGTATTCTTCTACCTTA-CCCATGATGAACAAAAT  894

seq1  AGTATAGA-GATAAATA-GGCTGAGCATGCTCACTGTCTGCCTGAC-TCC  946
      |||||||| ||||| || |||||||||||||||||||||  ||||| |||
seq2  AGTATAGAGGATAATTATGGCTGAGCATGCTCACTGTCTTGCTGACTTCC  944

seq1  AGAACTCCA--TCCTCATTCTAT-ACTGG-AGCT-AGGAATTCCTGCTGG  991
      |||||||||  ||  |||||||| ||||| |||| ||||||| |||||||
seq2  AGAACTCCAATTCAACATTCTATAACTGGAAGCTAAGGAATTTCTGCTGG  994

seq1  GATGCACTATAGACCACAAACAGAATTACCACACATGTGCTTT-GCTGAA  1040
      |||||||||| ||||||||||||||||||   ||||||||||| ||||||
seq2  GATGCACTAT-GACCACAAACAGAATTACGCTACATGTGCTTTGGCTGAA  1043

seq1  G-AGGAGCTCCATAAATTATAACAACCATCAGGCCAAAGACTTGTTATTC  1089
      | ||||||| ||||| |||||||||| ||||   |||  ||||| |||||
seq2  GAAGGAGCTTCATAACTTATAACAACAATCA--ACAAGAACTTG-TATTC  1090

seq1  TCTTCT-GGTGGAATT  1104
       ||||| |||||||||
seq2  -CTTCTCGGTGGAATT  1105