BAC Information

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BAC

Clone NameB6Ng01-183M15
Chromosome13 (Build37)
Map Location 108,430,244 - 108,553,692
singlet/doubletdoublet
Overlap geneZswim6
Upstream geneIpo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366, Apoo, AI197445, LOC100040820
Downstream gene3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, Pde4d, EG668144, LOC621663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183M15.bB6Ng01-183M15.g
ACCGA009327GA009328
length1,1301,175
definitionB6Ng01-183M15.b B6Ng01-183M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,552,558 - 108,553,692)(108,430,244 - 108,431,410)
sequence
gaattctcttgctgtggggttcaggggaagggagattttctctgcttcac
agagtaatttgtagtttaaatcagaagttagaaaatgaagaacatggact
ttacagtgaacaaacctatgataaatacctcgagtgtaattatccgaact
gtctttcttttgactgctgtttctagggtttaattatccatttaataccc
catgtaggaaggagaaaactgtaaatatgtattaataggaagtaatagac
tctggggattaaatgaggtcattaaaggtcacttggtttcattacagaac
aaattggagattcttaaagatactgtagccttagttatctgcatgtacaa
ttaaatcatttataacaaattaaatggtttagaataatttcacttttgtg
gttttataaacctctagtctaaatacagactgtagtagtttggctagatg
ttaagatagggtttgccgtagtaaagccatgaatacgtacattatttata
ccaaaaatagactccttcctttgtttaatgttgttgatctataacagatc
attgataatccacattcttcttacattagtggctaatggggatctcagag
ttggtattagatgtctgttttctccttaaaacagttcctaataaacttct
gccctcacttcctcatcttcctaagaattattactgtacttttcaccaag
aaacagccaccaaggggtaatgcagccaagatgtcaccactgggttgcgg
acctaagacagtgttgtcgtggtgtaggatccagatgcagtggttctcaa
ccttcccaatgctgcaaccctccccatgatgtagtgaccccaaccataag
actattctccttactatttcataactaattttgctattgttatgaatcgt
aacataagtatttctggagatagtctggtgccaaagggatctcaacccat
gggttgagaaacgctgagacagaagtgagggtaggcatgaagtaagaaag
gctgcaggcatttcttcccttggcgtagcagcatacagattattgaggct
gaagccccgtgtaagccatttggaattgcagtggcttgcagagaaaccag
ccatgccactgcctaattcgttaagaaggg
gaattcacttgaaggcctagaccttttggtacagaatttaacattgcaat
acatagcagcagaccacctcaatagaacagcacttaaggaatggtggacc
tgacagtaaccagtaataggctggactgtccttaaccttacacattccca
catctgaagtctcctaagtcagccctttaggtgatgttcagttaggtttc
tactgctgtgataaaacaccatgatcaaaagcaacgtagcgagaaaggga
tttatttcagcttaaagttctccatcacagtcaaaggaagtcaagacagg
cactggagcagtgcaagaacctggagataggagctgatgcagggggatgc
tgcgtactggcttgctactcggggcttgcttatcctgatttcctatacca
tcccaaacccccctgcctagggatcacaccacctccaatgggcagatcct
tctcatatcaatgactaatcaggagaatacccccacaggccaatccggtg
gaggcagtctcttaactgagtctcctcctgcccaaatgactctaggtcct
gtcaagttgaagcaacactagccagcacagtaatctcacagttcatttac
tgagatttttaaatgacacatcaataagcagggcatggtggcacatgcct
ctaagggaggcagaggcaggtggataacggccaacctggtctacaaagcc
aattccaggacagccagggctgttacacagagaaactctgtctcaaaaaa
caaaaacaaaaacaaaaacaaaaacccaaaaccaatagtcagaaccaaaa
acaaagcaaagacaaagaaacaaaaagacacatcaatgttgtggtaactt
ctaagtgagcacctgtattagttactcgttccctgctgtgacaaaatatc
tgggcaagaagtaacttcagaaaggaaggacttatttttggctcacagct
tcagggtacgccacccttcccttcatggctgcaaagtgaaggggaaggga
aaggagcttaaaacagctgcccaccacgtgttcttgcaagtcgccaagct
aagagggaagaagaatagaggcctcagctgattttttcttctgttaatga
actccaggccagcaatgttggccaccccaccttggggatggcttcattca
attagcgagtctaacattctccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_108552558_108553692
seq2: B6Ng01-183M15.b_44_1173 (reverse)

seq1  CCCTTCTT-ACGATTTAGCCAGTGGCATGCCTGG-TTCTCTGCAAAGCCA  48
      |||||||| |||| |||| |||||||||| |||| |||||||| ||||||
seq2  CCCTTCTTAACGAATTAGGCAGTGGCATGGCTGGTTTCTCTGC-AAGCCA  49

seq1  CTGCAAATTCCAAATGGCTTAACACGGGGCCTTTCAGGCCTCAATAATCT  98
      |||| ||||||||||||||| |||||||||  |||| |||||||||||||
seq2  CTGC-AATTCCAAATGGCTT-ACACGGGGC--TTCA-GCCTCAATAATCT  94

seq1  GTATGCTGCTACGCCAAGGGAAGAAATGCCCTGCAGCCTTTCTTACTTCA  148
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTATGCTGCTACGCCAAGGGAAGAAATG-CCTGCAGCCTTTCTTACTTCA  143

seq1  TGCCTACCCTCACTTCTGTCTCAGCGTTTCTCAACCCATGGGTTGAGATC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACCCTCACTTCTGTCTCAGCGTTTCTCAACCCATGGGTTGAGATC  193

seq1  CCTTTGGCACCAGACTATCTCCAGAAATACTTATGTTACGATTCATAACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGCACCAGACTATCTCCAGAAATACTTATGTTACGATTCATAACA  243

seq1  ATAGCAAAATTAGTTATGAAATAGTAAGGAGAATAGTCTTATGGTTGGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAATTAGTTATGAAATAGTAAGGAGAATAGTCTTATGGTTGGGG  293

seq1  TCACTACATCATGGGGAGGGTTGCAGCATTGGGAAGGTTGAGAACCACTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACATCATGGGGAGGGTTGCAGCATTGGGAAGGTTGAGAACCACTG  343

seq1  CATCTGGATCCTACACCACGACAACACTGTCTTAGGTCCGCAACCCAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGATCCTACACCACGACAACACTGTCTTAGGTCCGCAACCCAGTG  393

seq1  GTGACATCTTGGCTGCATTACCCCTTGGTGGCTGTTTCTTGGTGAAAAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCTTGGCTGCATTACCCCTTGGTGGCTGTTTCTTGGTGAAAAGT  443

seq1  ACAGTAATAATTCTTAGGAAGATGAGGAAGTGAGGGCAGAAGTTTATTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATAATTCTTAGGAAGATGAGGAAGTGAGGGCAGAAGTTTATTAG  493

seq1  GAACTGTTTTAAGGAGAAAACAGACATCTAATACCAACTCTGAGATCCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTTTTAAGGAGAAAACAGACATCTAATACCAACTCTGAGATCCCC  543

seq1  ATTAGCCACTAATGTAAGAAGAATGTGGATTATCAATGATCTGTTATAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCACTAATGTAAGAAGAATGTGGATTATCAATGATCTGTTATAGA  593

seq1  TCAACAACATTAAACAAAGGAAGGAGTCTATTTTTGGTATAAATAATGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAACATTAAACAAAGGAAGGAGTCTATTTTTGGTATAAATAATGTA  643

seq1  CGTATTCATGGCTTTACTACGGCAAACCCTATCTTAACATCTAGCCAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTCATGGCTTTACTACGGCAAACCCTATCTTAACATCTAGCCAAAC  693

seq1  TACTACAGTCTGTATTTAGACTAGAGGTTTATAAAACCACAAAAGTGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAGTCTGTATTTAGACTAGAGGTTTATAAAACCACAAAAGTGAAA  743

seq1  TTATTCTAAACCATTTAATTTGTTATAAATGATTTAATTGTACATGCAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAAACCATTTAATTTGTTATAAATGATTTAATTGTACATGCAGA  793

seq1  TAACTAAGGCTACAGTATCTTTAAGAATCTCCAATTTGTTCTGTAATGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGGCTACAGTATCTTTAAGAATCTCCAATTTGTTCTGTAATGAA  843

seq1  ACCAAGTGACCTTTAATGACCTCATTTAATCCCCAGAGTCTATTACTTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGACCTTTAATGACCTCATTTAATCCCCAGAGTCTATTACTTCC  893

seq1  TATTAATACATATTTACAGTTTTCTCCTTCCTACATGGGGTATTAAATGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATACATATTTACAGTTTTCTCCTTCCTACATGGGGTATTAAATGG  943

seq1  ATAATTAAACCCTAGAAACAGCAGTCAAAAGAAAGACAGTTCGGATAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAACCCTAGAAACAGCAGTCAAAAGAAAGACAGTTCGGATAATT  993

seq1  ACACTCGAGGTATTTATCATAGGTTTGTTCACTGTAAAGTCCATGTTCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCGAGGTATTTATCATAGGTTTGTTCACTGTAAAGTCCATGTTCTT  1043

seq1  CATTTTCTAACTTCTGATTTAAACTACAAATTACTCTGTGAAGCAGAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTAACTTCTGATTTAAACTACAAATTACTCTGTGAAGCAGAGAA  1093

seq1  AATCTCCCTTCCCCTGAACCCCACAGCAAGAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||
seq2  AATCTCCCTTCCCCTGAACCCCACAGCAAGAGAATTC  1130

seq1: chr13_108430244_108431410
seq2: B6Ng01-183M15.g_62_1236

seq1  GAATTCACTTGAAGGCCTAGACCTTTTGGTACAGAATTTAACATTGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGAAGGCCTAGACCTTTTGGTACAGAATTTAACATTGCAAT  50

seq1  ACATAGCAGCAGACCACCTCAATAGAACAGCACTTAAGGAATGGTGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAGCAGACCACCTCAATAGAACAGCACTTAAGGAATGGTGGACC  100

seq1  TGACAGTAACCAGTAATAGGCTGGACTGTCCTTAACCTTACACATTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTAACCAGTAATAGGCTGGACTGTCCTTAACCTTACACATTCCCA  150

seq1  CATCTGAAGTCTCCTAAGTCAGCCCTTTAGGTGATGTTCAGTTAGGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAGTCTCCTAAGTCAGCCCTTTAGGTGATGTTCAGTTAGGTTTC  200

seq1  TACTGCTGTGATAAAACACCATGATCAAAAGCAACGTAGCGAGAAAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGTGATAAAACACCATGATCAAAAGCAACGTAGCGAGAAAGGGA  250

seq1  TTTATTTCAGCTTAAAGTTCTCCATCACAGTCAAAGGAAGTCAAGACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCAGCTTAAAGTTCTCCATCACAGTCAAAGGAAGTCAAGACAGG  300

seq1  CACTGGAGCAGTGCAAGAACCTGGAGATAGGAGCTGATGCAGGGGGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGCAGTGCAAGAACCTGGAGATAGGAGCTGATGCAGGGGGATGC  350

seq1  TGCGTACTGGCTTGCTACTCGGGGCTTGCTTATCCTGATTTCCTATACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTACTGGCTTGCTACTCGGGGCTTGCTTATCCTGATTTCCTATACCA  400

seq1  TCCCAAACCCCCCTGCCTAGGGATCACACCACCTCCAATGGGCAGATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACCCCCCTGCCTAGGGATCACACCACCTCCAATGGGCAGATCCT  450

seq1  TCTCATATCAATGACTAATCAGGAGAATACCCCCACAGGCCAATCCGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATATCAATGACTAATCAGGAGAATACCCCCACAGGCCAATCCGGTG  500

seq1  GAGGCAGTCTCTTAACTGAGTCTCCTCCTGCCCAAATGACTCTAGGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTCTCTTAACTGAGTCTCCTCCTGCCCAAATGACTCTAGGTCCT  550

seq1  GTCAAGTTGAAGCAACACTAGCCAGCACAGTAATCTCACAGTTCATTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTTGAAGCAACACTAGCCAGCACAGTAATCTCACAGTTCATTTAC  600

seq1  TGAGATTTTTAAATGACACATCAATAAGCAGGGCATGGTGGCACATGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTTAAATGACACATCAATAAGCAGGGCATGGTGGCACATGCCT  650

seq1  CTAAGGGAGGCAGAGGCAGGTGGATAACGGCCAACCTGGTCTACAAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGAGGCAGAGGCAGGTGGATAACGGCCAACCTGGTCTACAAAGCC  700

seq1  AATTCCAGGACAGCCAGGGCTGTTACACAGAGAAACTCTGTCTCAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGGACAGCCAGGGCTGTTACACAGAGAAACTCTGTCTCAAAAAA  750

seq1  CAAAAACAAAAACAAAAACAAAAACCCAAAACCAATAGTCAGAACCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAAAACAAAAACAAAAACCCAAAACCAATAGTCAGAACCAAAA  800

seq1  ACAAAGCAAAGACAAAGAAACAAAAAGACACATCAATGTTGTGGTAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCAAAGACAAAGAAACAAAAAGACACATCAATGTTGTGGTAACTT  850

seq1  CTAAGTGAGCACCTGTATTAGTTACTCGTTCCCTGCTGTGACAAAATATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGAGCACCTGTATTAGTTACTCGTTCCCTGCTGTGACAAAATATC  900

seq1  T-GGCAAGAAGTAACTTCAGAAAGGAAGGACTTA-TTTTGGCTCACAGCT  948
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGGCAAGAAGTAACTTCAGAAAGGAAGGACTTATTTTTGGCTCACAGCT  950

seq1  TCAGGGTACG-CACCCTT-CCTTCATGGCTGCAAAGTGAAGGGGAAGGG-  995
      |||||||||| ||||||| |||||||||||||||||||||||||||||| 
seq2  TCAGGGTACGCCACCCTTCCCTTCATGGCTGCAAAGTGAAGGGGAAGGGA  1000

seq1  AAGGAGCTTAAAACAGCTGCCCA-CACGTGT--CTGC-AGTCGCAAAGCT  1041
      ||||||||||||||||||||||| |||||||   ||| |||||| |||||
seq2  AAGGAGCTTAAAACAGCTGCCCACCACGTGTTCTTGCAAGTCGCCAAGCT  1050

seq1  AAGAGGGAAGAAG-ATAGAGG-CTCAGCTTGTTTTTTTCTTCTGTTTAAT  1089
      ||||||||||||| ||||||| |||||| || |||||||||||| |||||
seq2  AAGAGGGAAGAAGAATAGAGGCCTCAGC-TGATTTTTTCTTCTG-TTAAT  1098

seq1  GGACTCCAGCCCAGGAAATGTT-GCCA-CCCACTTGTGGTATGGCTTCTA  1137
      | ||||||| ||| | |||||| |||| ||||| |  || |||||||| |
seq2  GAACTCCAGGCCA-GCAATGTTGGCCACCCCACCTTGGGGATGGCTTC-A  1146

seq1  TCTCAATTAACCCAATCTAACA-TCTCCCTC  1167
      | |||||| | | | ||||||| ||||||||
seq2  T-TCAATT-AGCGAGTCTAACATTCTCCCTC  1175