BAC Information

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BAC

Clone NameB6Ng01-183N17
Chromosome13 (Build37)
Map Location 71,878,388 - 71,879,510
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts16, 8030423J24Rik, LOC627230, LOC100042360
Downstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183N17.bB6Ng01-183N17.g
ACCGA009377GA009378
length1,162778
definitionB6Ng01-183N17.b B6Ng01-183N17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgccttcgtgtttcaggcctcctgcttccatgggtccacaggg
ttatctcagctcctgatatgcctacatacaggccacagggtctcctccca
tctccacaggcgagttggagtcctctccttgtcttattgcttctcatgaa
tatcactgtagcctctcctcatctgccttctcctcagatgcatgactttt
tcttttggaagctacacctttgtggcgaggctgctattcccactgcatct
tgcctcagtcactcccacttagaccagtgtggtctttagacaggatctcc
ctctcctacccagcctgccctcccaggtcctctcctgtgccatcacctct
aaacagactctgattgatgggcccaaggaaaaaaaacagagaaatactcg
gaactgctcaggagcaacactgacaacatgaatggacttagtgagttaaa
aaagaaatacagggaatcaggaggaaatggcagggaagagggaagtagag
ttccaggggatggaatagatggatatctaatcaaaatggatctcatgcat
gtatgaaattatcaaacaataaatcatcctttttgaagtgtctgttgaca
gtttgttacagggacggagtacactgttactgctgttgccattcctgtct
cctatctctaccacccgtgttacctgcctcctcttcctgacaaactcctt
tttactgtcatgccatttttaattagaatctaaggtgctaataccgttat
gaacatttctaacacagcacatttgatggctcccctgttgactttttgtt
ctttctctgcagttctgattgcttgagttgagtgcttgaagcgtttcaga
tgtatttttatcactcttcgtgtgggttttgaggcagtctcatgtagtcc
aaggtgagccttgagttctccatatcactgtggatgccccttgagcttta
tgatacccctgcctctgcacgcgaagttctaggattttctgaaggtggaa
agtgttgccattcatgcttgagttggtgcctgtggctgggggatccagtc
ttttcaaacattggcgagggccaaaccctctttcctaactggagaaggcc
ttcccagtttccttggaaatttggtaattattaatttcctttatataata
tataatattata

gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttgtgcatctaacgagatgatcatgtggtttttttcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgtatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtttcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgctctaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcagcttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggtttttcc
agttttgttgagtatagccttttgtaaaaggatctgatggtgttttggat
tttcttcaggatctgtttgttatgtctcccttttcagttctgattttgtt
aattaggatttttgtctcttgtgtcctctaagggagtcctagctaagggt
ttatcctatctggttgattttctcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71878388_71879510
seq2: B6Ng01-183N17.b_49_1210

seq1  GAATTCTTGCCTTCGTGTTTCAGGCCTCCTGCTTCCATGGGTCCACAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCTTCGTGTTTCAGGCCTCCTGCTTCCATGGGTCCACAGGG  50

seq1  TTATCTCAGCTCCTGATATGCCTACATACAGGCCACAGGGTCTCCTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAGCTCCTGATATGCCTACATACAGGCCACAGGGTCTCCTCCCA  100

seq1  TCTCCACAGGCGAGTTGGAGTCCTCTCCTTGTCTTATTGCTTCTCATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAGGCGAGTTGGAGTCCTCTCCTTGTCTTATTGCTTCTCATGAA  150

seq1  TATCACTGTAGCCTCTCCTCATCTGCCTTCTCCTCAGATGCATGACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTGTAGCCTCTCCTCATCTGCCTTCTCCTCAGATGCATGACTTTT  200

seq1  TCTTTTGGAAGCTACACCTTTGTGGCGAGGCTGCTATTCCCACTGCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGAAGCTACACCTTTGTGGCGAGGCTGCTATTCCCACTGCATCT  250

seq1  TGCCTCAGTCACTCCCACTTAGACCAGTGTGGTCTTTAGACAGGATCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGTCACTCCCACTTAGACCAGTGTGGTCTTTAGACAGGATCTCC  300

seq1  CTCTCCTACCCAGCCTGCCCTCCCAGGTCCTCTCCTGTGCCATCACCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTACCCAGCCTGCCCTCCCAGGTCCTCTCCTGTGCCATCACCTCT  350

seq1  AAACAGACTCTGATTGATGGGCCCAAGGAAAAAAAACAGAGAAATACTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACTCTGATTGATGGGCCCAAGGAAAAAAAACAGAGAAATACTCG  400

seq1  GAACTGCTCAGGAGCAACACTGACAACATGAATGGACTTAGTGAGTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCTCAGGAGCAACACTGACAACATGAATGGACTTAGTGAGTTAAA  450

seq1  AAAGAAATACAGGGAATCAGGAGGAAATGGCAGGGAAGAGGGAAGTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATACAGGGAATCAGGAGGAAATGGCAGGGAAGAGGGAAGTAGAG  500

seq1  TTCCAGGGGATGGAATAGATGGATATCTAATCAAAATGGATCTCATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGGATGGAATAGATGGATATCTAATCAAAATGGATCTCATGCAT  550

seq1  GTATGAAATTATCAAACAATAAATCATCCTTTTTGAAGTGTCTGTTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAATTATCAAACAATAAATCATCCTTTTTGAAGTGTCTGTTGACA  600

seq1  GTTTGTTACAGGGACGGAGTACACTGTTACTGCTGTTGCCATTCCTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTACAGGGACGGAGTACACTGTTACTGCTGTTGCCATTCCTGTCT  650

seq1  CCTATCTCTACCACCCGTGTTACCTGCCTCCTCTTCCTGACAAACTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCTACCACCCGTGTTACCTGCCTCCTCTTCCTGACAAACTCCTT  700

seq1  TTTACTGTCATGCCATTTTTAATTAGAATCTAAGGTGCTAATACCGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTCATGCCATTTTTAATTAGAATCTAAGGTGCTAATACCGTTAT  750

seq1  GAACATTTCTAACACAGCACATTTGATGGCTCCCCTGTTGAC-TTTTGTT  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAACATTTCTAACACAGCACATTTGATGGCTCCCCTGTTGACTTTTTGTT  800

seq1  CTTTCTCTGCAGTTCTGATTGCTTGAGTTGAGTGCTTGAAGCGTTTCAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGCAGTTCTGATTGCTTGAGTTGAGTGCTTGAAGCGTTTCAGA  850

seq1  TGTATTTTTATCACTCTTCGTGT-GGTTTTGAGGCAGTCTCATGTAGTCC  898
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTATTTTTATCACTCTTCGTGTGGGTTTTGAGGCAGTCTCATGTAGTCC  900

seq1  -AGGTGAGCCTTGAGTTCTCCATATCACTGTGGATG-CCCTTGAGC-TTA  945
       ||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  AAGGTGAGCCTTGAGTTCTCCATATCACTGTGGATGCCCCTTGAGCTTTA  950

seq1  TGATACCCCTGCCTCTGCCACGCG-AGTTCTAGGA-TTTCTGAA-GTGG-  991
      ||||||||||||||||| |||||| |||||||||| |||||||| |||| 
seq2  TGATACCCCTGCCTCTG-CACGCGAAGTTCTAGGATTTTCTGAAGGTGGA  999

seq1  AAGTG-TGCCA-TCATGCTTGAGTT-GTG-CTGT-GCT-GGGGATCCAGT  1035
      ||||| ||||| ||||||||||||| ||| |||| ||| |||||||||||
seq2  AAGTGTTGCCATTCATGCTTGAGTTGGTGCCTGTGGCTGGGGGATCCAGT  1049

seq1  C-TTTCAAACAT--GCGAGG--CAAACCCTC--TCCTAACT-GAGAAG--  1075
      | ||||||||||  ||||||  |||||||||  |||||||| ||||||  
seq2  CTTTTCAAACATTGGCGAGGGCCAAACCCTCTTTCCTAACTGGAGAAGGC  1099

seq1  CCTCCCAG-TTCCTTG--AATTTTGT-ATTATTAATTTC-----------  1110
      | |||||| |||||||  ||||| || ||||||||||||           
seq2  CTTCCCAGTTTCCTTGGAAATTTGGTAATTATTAATTTCCTTTATATAAT  1149

seq1  TTATAATATTATA  1123
       ||||||||||||
seq2  ATATAATATTATA  1162


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