BAC Information

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BAC

Clone NameB6Ng01-183P02
Chromosome13 (Build37)
Map Location 64,321,484 - 64,465,364
singlet/doubletdoublet
Overlap geneCdc14b, 1110018J18Rik, Ctsl
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4
Downstream geneCcrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183P02.bB6Ng01-183P02.g
ACCGA009443GA009444
length1,059734
definitionB6Ng01-183P02.b B6Ng01-183P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,321,484 - 64,322,515)(64,464,633 - 64,465,364)
sequence
gaattcaaagtaaagcacctagagacaaaactgagcctcacacttactgt
attgctggtgcccaggagggacttaggacgttgcatgagctaagctgaca
ctgccactgcacctgacagttactgtgttgtatatacataaaaataactt
ggaggggaacagtattcaactttttttttctttaaatgaggtacactcaa
agctaacgctgtctctagctaaaaccaaattacttaactctcttgtgcct
tgtttttgtggtgttggtattaaacccttggcctctcgcatgctaagcaa
gtgctcacccaactgaatgacaaccccagcctgcctcctgtctgtaagtg
ccctttccatcccattcaagcatagaaacaatcagaaatttagaacgagc
tgtttattggtttgggatcactttaatgttaaccggtaccttacacagct
gaaggaactctaacagccctgtggagaagaattcatcttctgcaagacac
tcaccttctttactgcgtgaaaacagtcgagaagtgtaatatagaaactg
cagcttccataggcagcatctctgaaattcccaaagtgttactccgttaa
tgttctacaccacactcaccccaagaaaaagctgactagaattcaaaacc
aaactttgcttcgataatctgttcactacagaaacaagcattctgctccc
atagttatagtagaactttgaataaatttaacttgggtaaccttttcctg
ttcttaagggtttagaattccaatagcatccagtaaaatcactccgcatc
ccaccaagcttataactacaaaatcagatagttccacttcatatactgta
tcggtccctatcatgcaattcaacaagagagtgaaactctcaacttgaag
taatgcatacctttggaaagtagttaactaccttgcattcaactttcttt
acatggtccacactttctccaactttagtttaacctagttaaaagcacta
ccaaattctaatccatgcaaaagaattttggatgccatgaattttttctt
ttcccagaa
gaattcagcttaaaactgaccaaacccttattgagtcaaaccatggtact
tgaatcattgaggatccaagtcatgatttgaattctgttgccatttttac
atgggttaaatgttaccactacttaaaactcctgttataaacagctttat
aatattgaaaacttagtgcttaattctgagtctggaatatttgttttata
taaaggttgtataaaactttctttacctcttaaaaataaattttagctca
gtgtgtgtgtatgtgggacttcagtgtgtaatgtgttgacaaatgttcgg
gactaaatactgattcagggtgacatggtacagcaagaaaaaggtggcag
gtgctctggagccttcggatttcacctcagtgtcccatcagattaggtat
gtgttagtgaatctagcttgggataattgttttctttttgtgtgtgtaca
tggtaaatgtgtggagttcagagaacaactcagttccacagtgttggtcc
tatcaggtcctagccatcaaaataaggttgtcaggctgggccacaggtgc
cttttactactgagctatcttgccagccccactagtttttaagtgacata
attacgtatgtttatactataatgtgtttttgatatgatgtgtatactac
aaaatgatctgatagggctaataagcttacctcaaatatttaattacttt
tgttgaacttttctagcttgtttttaaaatacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64321484_64322515
seq2: B6Ng01-183P02.b_49_1107

seq1  GAATTCAAAGTAAAGCACCTAGAGACAAAACTGAGCCTCACACTTACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTAAAGCACCTAGAGACAAAACTGAGCCTCACACTTACTGT  50

seq1  ATTGCTGGTGCCCAGGAGGGACTTAGGACGTTGCATGTGCTAAGCTGACA  100
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTGCTGGTGCCCAGGAGGGACTTAGGACGTTGCATGAGCTAAGCTGACA  100

seq1  CTGCCACTGCACCTGACAGTTACTGTGTTGTATATACATAAAAATAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACTGCACCTGACAGTTACTGTGTTGTATATACATAAAAATAACTT  150

seq1  GGAGGGGAACAGTATTCAACTTTTTTTTTCTTTAAATGAGGTACACTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAACAGTATTCAACTTTTTTTTTCTTTAAATGAGGTACACTCAA  200

seq1  AGCTAACGCTGTCTCTAGCTAAAACCAAATTACTTAACTCTCTTGTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACGCTGTCTCTAGCTAAAACCAAATTACTTAACTCTCTTGTGCCT  250

seq1  TGTTTTTGTGGTGTTGGTATTAAACCCTTGGCCTCTCGCATGCTAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTGGTGTTGGTATTAAACCCTTGGCCTCTCGCATGCTAAGCAA  300

seq1  GTGCTCACCCAACTGAATGACAACCCCAGCCTGCCTCCTGTCTGTAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCACCCAACTGAATGACAACCCCAGCCTGCCTCCTGTCTGTAAGTG  350

seq1  CCCTTTCCATCCCATTCAAGCATAGAAACAATCAGAAATTTAGAACGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCATCCCATTCAAGCATAGAAACAATCAGAAATTTAGAACGAGC  400

seq1  TGTTTATTGGTTTGGGATCACTTTAATGTTAACCGGTACCTTACACAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTGGTTTGGGATCACTTTAATGTTAACCGGTACCTTACACAGCT  450

seq1  GAAGGAACTCTAACAGCCCTGTGGAGAAGAATTCATCTTCTGCAAGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACTCTAACAGCCCTGTGGAGAAGAATTCATCTTCTGCAAGACAC  500

seq1  TCACCTTCTTTACTGCGTGAAAACAGTCGAGAAGTGTAATATAGAAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCTTTACTGCGTGAAAACAGTCGAGAAGTGTAATATAGAAACTG  550

seq1  CAGCTTCCATAGGCAGCATCTCTGAAATTCCCAAAGTGTTACTCCGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCATAGGCAGCATCTCTGAAATTCCCAAAGTGTTACTCCGTTAA  600

seq1  TGTTCTACACCACACTCACCCCAAGAAAAAGCTGACTAGAATTCAAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTACACCACACTCACCCCAAGAAAAAGCTGACTAGAATTCAAAACC  650

seq1  AAAC-TTGCTTCGATAATCTGTTCACTACAGAAACAAGCATTCTGCTCCC  699
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGCTTCGATAATCTGTTCACTACAGAAACAAGCATTCTGCTCCC  700

seq1  ATAGTTATAGTAGAACTTTGAATAAATTTAAC-TGGGTAACCTTTTCCTG  748
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATAGTTATAGTAGAACTTTGAATAAATTTAACTTGGGTAACCTTTTCCTG  750

seq1  TTCTTAAGGG-TTAGAATTCCAATAGCATCCAGTAAAATCACTCCGCATC  797
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGGGTTTAGAATTCCAATAGCATCCAGTAAAATCACTCCGCATC  800

seq1  CCACCAAGCTTATAACTACAAAA-CAGATAGTTCCAC-TCAAATACTGTA  845
      ||||||||||||||||||||||| ||||||||||||| ||| ||||||||
seq2  CCACCAAGCTTATAACTACAAAATCAGATAGTTCCACTTCATATACTGTA  850

seq1  TCGG-CCCTATCA-GCAA-TCAAC-AGAGAGTG-AACTCTCAAACTGAAG  890
      |||| |||||||| |||| ||||| |||||||| |||||||||  |||||
seq2  TCGGTCCCTATCATGCAATTCAACAAGAGAGTGAAACTCTCAACTTGAAG  900

seq1  TAATGCATAACTTT-GAAAGTAGTTAACTA-CTTGCATT-AAC-TTCTTA  936
      ||||||||| |||| ||||||||||||||| |||||||| ||| ||||| 
seq2  TAATGCATACCTTTGGAAAGTAGTTAACTACCTTGCATTCAACTTTCTTT  950

seq1  ACATGGCCAACAC-TTCTCCAAC-TTAG-TTAACCTAGTTAAAGGCAC-A  982
      |||||| | |||| ||||||||| |||| |||||||||||||| |||| |
seq2  ACATGGTCCACACTTTCTCCAACTTTAGTTTAACCTAGTTAAAAGCACTA  1000

seq1  CC-AATTC--AACCATGC-AAAGAATTT--GATG-CATAGATTTTT--TT  1023
      || |||||  | |||||| |||||||||  |||| |||  ||||||  ||
seq2  CCAAATTCTAATCCATGCAAAAGAATTTTGGATGCCATGAATTTTTTCTT  1050

seq1  TTCCAAGAA  1032
      |||| ||||
seq2  TTCCCAGAA  1059

seq1: chr13_64464633_64465364
seq2: B6Ng01-183P02.g_65_798 (reverse)

seq1  GTGTATTTTAAAAAC-AGCTAGAAAAGTTCAAC-AAAGTAATTAAATATT  48
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  GTGTATTTTAAAAACAAGCTAGAAAAGTTCAACAAAAGTAATTAAATATT  50

seq1  TGAGGTAAGCTTATTAGCCCTATCAGATCATTTTGTAGTATACACATCAT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAAGCTTATTAGCCCTATCAGATCATTTTGTAGTATACACATCAT  100

seq1  ATCAAAAACACATTATAGTATAAACATACGTAATTATGTCACTTAAAAAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAACACATTATAGTATAAACATACGTAATTATGTCACTTAAAAAC  150

seq1  TAGTGGGGCTGGCAAGATAGCTCAGTAGTAAAAGGCACCTGTGGCCCAGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGGCTGGCAAGATAGCTCAGTAGTAAAAGGCACCTGTGGCCCAGC  200

seq1  CTGACAACCTTATTTTGATGGCTAGGACCTGATAGGACCAACACTGTGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAACCTTATTTTGATGGCTAGGACCTGATAGGACCAACACTGTGGA  250

seq1  ACTGAGTTGTTCTCTGAACTCCACACATTTACCATGTACACACACAAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTGTTCTCTGAACTCCACACATTTACCATGTACACACACAAAAA  300

seq1  GAAAACAATTATCCCAAGCTAGATTCACTAACACATACCTAATCTGATGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAATTATCCCAAGCTAGATTCACTAACACATACCTAATCTGATGG  350

seq1  GACACTGAGGTGAAATCCGAAGGCTCCAGAGCACCTGCCACCTTTTTCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAGGTGAAATCCGAAGGCTCCAGAGCACCTGCCACCTTTTTCTT  400

seq1  GCTGTACCATGTCACCCTGAATCAGTATTTAGTCCCGAACATTTGTCAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACCATGTCACCCTGAATCAGTATTTAGTCCCGAACATTTGTCAAC  450

seq1  ACATTACACACTGAAGTCCCACATACACACACACTGAGCTAAAATTTATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACACACTGAAGTCCCACATACACACACACTGAGCTAAAATTTATT  500

seq1  TTTAAGAGGTAAAGAAAGTTTTATACAACCTTTATATAAAACAAATATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGGTAAAGAAAGTTTTATACAACCTTTATATAAAACAAATATTC  550

seq1  CAGACTCAGAATTAAGCACTAAGTTTTCAATATTATAAAGCTGTTTATAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGAATTAAGCACTAAGTTTTCAATATTATAAAGCTGTTTATAA  600

seq1  CAGGAGTTTTAAGTAGTGGTAACATTTAACCCATGTAAAAATGGCAACAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTTTAAGTAGTGGTAACATTTAACCCATGTAAAAATGGCAACAG  650

seq1  AATTCAAATCATGACTTGGATCCTCAATGATTCAAGTACCATGGTTTGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAATCATGACTTGGATCCTCAATGATTCAAGTACCATGGTTTGAC  700

seq1  TCAATAAGGGTTTGGTCAGTTTTAAGCTGAATTC  732
      ||||||||||||||||||||||||||||||||||
seq2  TCAATAAGGGTTTGGTCAGTTTTAAGCTGAATTC  734