BAC Information

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BAC

Clone NameB6Ng01-184A15
Chromosome13 (Build37)
Map Location 71,118,234 - 71,300,872
singlet/doubletdoublet
Overlap genenone
Upstream geneEG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC627230, LOC100042360, Irx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184A15.bB6Ng01-184A15.g
ACCGA009515GA009516
length3581,093
definitionB6Ng01-184A15.b B6Ng01-184A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,118,234 - 71,118,592)(71,299,758 - 71,300,872)
sequence
cagcatttagtgtttagcatttgtcatttgtaatctgcactctcatcttc
taattcccacaccctggtgcttgacaaagggcagtcttttcagaatgtgc
tgccagagtgcacttctcttagagttctgcttctaaatggatatcctgat
ttgaatgaaaatagccctattagctcagagggaggggcattatatgaaag
gattaggatttgtggccctgttaaagtgggtgtggccttcttggagtggg
tgtggccttgttggagtgggtgtaaccttggtggagtgggtgtggaattg
gtgaagttggtatggccttgttggagaaagcaataactgggggtgggcta
caaggttt
gaattcatggctgagctccgttttcaacctcagagtgcttgattacaagt
ccagtcataatgcccagctgtctttttttttttcttgttctttataaaaa
caaaacaatacttccttgtgtttactgcaagcaattattgagtctctaaa
atatgaagcaaccctgaggagaaaggtgctacaatgttccttcagatcag
caaaccctgctgtgctggtgcctggtcactcaagctgtagtggattcttt
gtgcagtgttggtcaatggatgctgatactggcgggtgagcactgtgttc
tcctaagaggcttaatttaaaaactttgtatctttctgctttaaagggag
aaacttttgactcttcacatgcatgcatggcttcgctcttccaggtctag
agtcaggtgcatttttgattcatttgaggcggggaatgattttgcctggg
ctccagcctatggagttcatcgtgtactacttaaaagacacttaaaacaa
acatcttttaagtaatcttttacaaaatcttcagagaataccccaaccct
ctcctttgtgaactacctgtgaggacaggtatgctgaggggtctggcaat
ggcattgcttacaaaggtccatggtgtggaaaactgcataaccctttctg
ggggatgagccaggtgccttgtctgtttcctccttccgaatggccaaggt
tgtttatggcaagacccaagtaagctgaagaatgctataaatgtataatt
acagtttgactcagctatggggacagattctgtatctcctgatactacca
tttatttcaaatggggattccccattgagcataaaacattcaatgccagg
ttatgttttaactaatgatagcaaactcttagaaagtttttttattttga
aaatccaaaatcatgcttgtttttctgttataacacatatccaaactcca
actatcctagaaatcctctaaagttacatctcctgttaacatcaaatgct
aaatatcatatgtctgattgccccagaccctagacaatttctgctcattc
acataggagtcatcttctccctcttctcagggagtatggcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71118234_71118592
seq2: B6Ng01-184A15.b_49_406

seq1  CAGCATTTAGTGTTTAGCATTTGTCATTTGTAATCTGCACTCTCATCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTAGTGTTTAGCATTTGTCATTTGTAATCTGCACTCTCATCTTC  50

seq1  TAATTCCCACACCCTGGTGCTTGACAAAGGGCAGTCTTTTCAGAATGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCACACCCTGGTGCTTGACAAAGGGCAGTCTTTTCAGAATGTGC  100

seq1  TGCCAGAGTGCACTTCTCTTAGAGTTCTGCTTCTAAATGGATATCCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAGTGCACTTCTCTTAGAGTTCTGCTTCTAAATGGATATCCTGAT  150

seq1  TTGAATGAAAATAGCCCTATTAGCTCAGAGGGAGGGGCATTATATGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAAAATAGCCCTATTAGCTCAGAGGGAGGGGCATTATATGAAAG  200

seq1  GATTAGGATTTGTGGCCCTGTTAAAGTGGGTGTGGCCTTCTTGGAGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGATTTGTGGCCCTGTTAAAGTGGGTGTGGCCTTCTTGGAGTGGG  250

seq1  TGTGGCCTTGTTGGAGTGGGTGTAACCTTGGTGGAGTGGGTGTGGAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTTGTTGGAGTGGGTGTAACCTTGGTGGAGTGGGTGTGGAATTG  300

seq1  GTGAAGTTGGTATGGCCTTGTTGGAGAAAGTACATTACTGGGGGTGGGCT  350
      |||||||||||||||||||||||||||||| | || ||||||||||||||
seq2  GTGAAGTTGGTATGGCCTTGTTGGAGAAAGCA-ATAACTGGGGGTGGGCT  349

seq1  TCGAGGTTT  359
       | ||||||
seq2  ACAAGGTTT  358

seq1: chr13_71299758_71300872
seq2: B6Ng01-184A15.g_63_1155 (reverse)

seq1  AAGGCCAATACTTCCCGAGAAGAGGGGAGAGATGACTTCTAATGTGAAAT  50
      |||||| ||||| || ||||||||||   |||||||| || |||||||  
seq2  AAGGCC-ATACTCCCTGAGAAGAGGGAGAAGATGACTCCT-ATGTGAA--  46

seq1  GGAGACAGAAATGGTTCTAGGGTCTGGGGGCAATCAGACATTATGATATT  100
       ||| ||||||| | |||||||||| |||||||||||||| |||||||||
seq2  TGAG-CAGAAATTG-TCTAGGGTCT-GGGGCAATCAGACA-TATGATATT  92

seq1  TAAGCCATTTGAATGTAACAGGGAGATGTAACTTTAGA-GATTTCCTTAG  149
      ||   |||||||   ||||| ||||||||||||||||| ||||||  || 
seq2  TA--GCATTTGATGTTAACA-GGAGATGTAACTTTAGAGGATTTC--TA-  136

seq1  GGATAGTTGGAGTTTTGATATGTGGTTAATACAG-AAAACAAGCATGATT  198
      ||||||||||||||| ||||||| ||||  |||| |||||||||||||||
seq2  GGATAGTTGGAGTTTGGATATGT-GTTATAACAGAAAAACAAGCATGATT  185

seq1  TTGGATTTTCAAAAAAAAAAAAAAAAAAAACTTTCTAAGAGTTTGCTATC  248
      ||||||||||        |||| |||||||||||||||||||||||||||
seq2  TTGGATTTTC--------AAAATAAAAAAACTTTCTAAGAGTTTGCTATC  227

seq1  ATTAGTTAAAACATAACCTGGCATTGAATGTTTTATGCTCAATGGGGAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTAAAACATAACCTGGCATTGAATGTTTTATGCTCAATGGGGAAT  277

seq1  CCCCATTTGAAATAAATGGTAGTATCAGGAGATACAGAATCTGTCCCCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTGAAATAAATGGTAGTATCAGGAGATACAGAATCTGTCCCCAT  327

seq1  AGCCTGAGTCAAACTGTAATTATACATTTATAGCATTCTTCAGCTTACTT  398
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-CTGAGTCAAACTGTAATTATACATTTATAGCATTCTTCAGCTTACTT  376

seq1  GGGTCTTGCCATAAACAACCTTGGCCATTCGGAAGGAGGAAACAGACAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGCCATAAACAACCTTGGCCATTCGGAAGGAGGAAACAGACAAG  426

seq1  GCACCTGGCTCATCCCCCAGAAAGGGTTATGCAGTTTTCCACACCATGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGGCTCATCCCCCAGAAAGGGTTATGCAGTTTTCCACACCATGGA  476

seq1  CCTTTGTAAGCAATGCCATTGCCAGACCCCTCAGCATACCTGTCCTCACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTAAGCAATGCCATTGCCAGACCCCTCAGCATACCTGTCCTCACA  526

seq1  GGTAGTTCACAAAGGAGAGGGTTGGGGTATTCTCTGAAGATTTTGTAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTCACAAAGGAGAGGGTTGGGGTATTCTCTGAAGATTTTGTAAAA  576

seq1  GATTACTTAAAAGATGTTTGTTTTAAGTGTCTTTTAAGTAGTACACGATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTTAAAAGATGTTTGTTTTAAGTGTCTTTTAAGTAGTACACGATG  626

seq1  AACTCCATAGGCTGGAGCCCAGGCAAAATCATTCCCCGCCTCAAATGAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATAGGCTGGAGCCCAGGCAAAATCATTCCCCGCCTCAAATGAAT  676

seq1  CAAAAATGCACCTGACTCTAGACCTGGAAGAGCGAAGCCATGCATGCATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGCACCTGACTCTAGACCTGGAAGAGCGAAGCCATGCATGCATG  726

seq1  TGAAGAGTCAAAAGTTTCTCCCTTTAAAGCAGAAAGATACAAAGTTTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTCAAAAGTTTCTCCCTTTAAAGCAGAAAGATACAAAGTTTTTA  776

seq1  AATTAAGCCTCTTAGGAGAACACAGTGCTCACCCGCCAGTATCAGCATCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCCTCTTAGGAGAACACAGTGCTCACCCGCCAGTATCAGCATCC  826

seq1  ATTGACCAACACTGCACAAAGAATCCACTACAGCTTGAGTGACCAGGCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCAACACTGCACAAAGAATCCACTACAGCTTGAGTGACCAGGCAC  876

seq1  CAGCACAGCAGGGTTTGCTGATCTGAAGGAACATTGTAGCACCTTTCTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGCAGGGTTTGCTGATCTGAAGGAACATTGTAGCACCTTTCTCC  926

seq1  TCAGGGTTGCTTCATATTTTAGAGACTCAATAATTGCTTGCAGTAAACAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTGCTTCATATTTTAGAGACTCAATAATTGCTTGCAGTAAACAC  976

seq1  AAGGAAGTATTGTTTTGTTTTTATAAAGAACAAGAAAAAAAAAAAGACAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTATTGTTTTGTTTTTATAAAGAACAAGAAAAAAAAAAAGACAG  1026

seq1  CTGGGCATTATGACTGGACTTGTAATCAAGCACTCTGAGGTTGAAAACGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATTATGACTGGACTTGTAATCAAGCACTCTGAGGTTGAAAACGG  1076

seq1  AGCTCAGCCATGAATTC  1115
      |||||||||||||||||
seq2  AGCTCAGCCATGAATTC  1093