BAC Information

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BAC

Clone NameB6Ng01-184B23
Chromosome13 (Build37)
Map Location 55,913,066 - 56,036,875
singlet/doubletdoublet
Overlap genePitx1
Upstream geneUnc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3
Downstream geneH2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184B23.bB6Ng01-184B23.g
ACCGA009575GA009576
length6871,157
definitionB6Ng01-184B23.b B6Ng01-184B23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,913,066 - 55,913,751)(56,035,722 - 56,036,875)
sequence
gaattccttctcagaaaggagatgtgggcagaaaagaagggattcaatat
gatggacacaccacctctagactgctcttcccagagagaatttctttgct
cttggttggctgtgccaccgtttcctgtgtgctgttttaatttcattaga
ggctttgtgtgtcagaccctgtaagaactgtgctgtgcaggcctgggtct
tggctagctcctggttagctctcctgtgatggagagccagggtagtggcg
aagcagagagtaccgagtggacagtaggcttggagcatctgccagacagc
agttagggacggggagagggagaggggatctgaagtgtccttctgggctg
agaactggacccctgctgttctctgggcaggatagaagtcatcattggga
tttttttttttttctctttgagactgagtttctctatgtagccctggctg
tcctggaactccttctgtagaccaggctggtcttgaactcaacagagatc
cacctgcctctacctcctgagtgttggattaaaggtgtgtgctaccactg
ccagggttaagttgctgcactgaactttttgatggggcccagtgagtaat
atattagaccatgcggagcctggattttatttagattatattaaagatcc
tctggggcataagtgtctatctttggggagggggagc
gaattccttactgtaaatatgaaaaaaacagtcagatgttgagatagcct
gtgatttcctactcaaagactgccaaaagaccttcaaggtctagattatg
gtcttcaaccataatctaggtttacatgtgtaaaacaagtcaatgagtga
cccagggactgagaaagctaaattctttctttttcactaacagaagtaga
tgtcccaaggggccccgcaggaagccacagaagaaacacagaaaactaca
acaatgaggccagccaccctttgatctaggagatccttcgggggactagt
ctctcccctctcatgcccacttccctcatactattactctaagaccaaga
agactgtctgaggaaagaagagccacacagaagaacattctagaagactg
gcctacttgtatgtccagatttgctctttgggacagagagaccaagaaag
ccaaaatgttgatctacttgagtaggataatatcttccaaggttggtata
tattctttaatacagcaatggcatgtctcagtataatatgccctggttga
ccatactctgcgttcatttcttgaacctatggaaatgttttatggtacat
caaaacatacagctctacctcttatgcaacatctgtgagtcaggattcag
gtcccatgtacactgggtagttgaatcatgtttgaaaactgtcttcaaac
accatctgcatgttcaaagaaattcttctggccacctgctaggtgtgccc
tggaattagacttcgagacagtaaaggcagatgaagggtttccactggga
agagaagaaatagaatccttgcacaagtgtgccaacctccaatcccatag
ccttgactcttcctgatgaccacaactccctctaaggccagtttgaagaa
gagacaccagctgcccaagacaccggagcatggctcagccaggcaagcag
catctgctctccaggcttcagctttcccatctgaatagtggggggataaa
agagctgagccaggcactgcccaagcgtcaggaggaaggaaacccagcta
tatgggtggttatgtctattcacagtatatgtagttgtacaacgaggagg
gaacaagaaggccaagggttcctctaaggtaacgggggagcttcttgtat
ctgtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55913066_55913751
seq2: B6Ng01-184B23.b_41_727

seq1  GAATTCCTTCTCAGAAAGGAGATGTGGGCAGAAAAGAAGGGATTCAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTCAGAAAGGAGATGTGGGCAGAAAAGAAGGGATTCAATAT  50

seq1  GATGGACACACCACCTCTAGACTGCTCTTCCCAGAGAGAATTTCTTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACACACCACCTCTAGACTGCTCTTCCCAGAGAGAATTTCTTTGCT  100

seq1  CTTGGTTGGCTGTGCCACCGTTTCCTGTGTGCTGTTTTAATTTCATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTGGCTGTGCCACCGTTTCCTGTGTGCTGTTTTAATTTCATTAGA  150

seq1  GGCTTTGTGTGTCAGACCCTGTAAGAACTGTGCTGTGCAGGCCTGGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTGTGTCAGACCCTGTAAGAACTGTGCTGTGCAGGCCTGGGTCT  200

seq1  TGGCTAGCTCCTGGTTAGCTCTCCTGTGATGGAGAGCCAGGGTAGTGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGCTCCTGGTTAGCTCTCCTGTGATGGAGAGCCAGGGTAGTGGCG  250

seq1  AAGCAGAGAGTACCGAGTGGACAGTAGGCTTGGAGCATCTGCCAGACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGAGTACCGAGTGGACAGTAGGCTTGGAGCATCTGCCAGACAGC  300

seq1  AGTTAGGGACGGGGAGAGGGAGAGGGGATCTGAAGTGTCCTTCTGGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGGACGGGGAGAGGGAGAGGGGATCTGAAGTGTCCTTCTGGGCTG  350

seq1  AGAACTGGACCCCTGCTGTTCTCTGGGCAGGATAGAAGTCATCATTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGACCCCTGCTGTTCTCTGGGCAGGATAGAAGTCATCATTGGGA  400

seq1  TTTTTTTTTTTTTCTCTTTGAGACTGAGTTTCTCTATGTAGCCCTGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTCTCTTTGAGACTGAGTTTCTCTATGTAGCCCTGGCTG  450

seq1  TCCTGGAACTCCTTCTGTAGACCAGGCTGGTCTTGAACTCAACAGAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCCTTCTGTAGACCAGGCTGGTCTTGAACTCAACAGAGATC  500

seq1  CACCTGCCTCTACCTCCTGAGTGTTGGATTAAAGGTGTGTGCTACCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCTACCTCCTGAGTGTTGGATTAAAGGTGTGTGCTACCACTG  550

seq1  CCAGGGTTAAGTTGCTGCACTGAACTTTTTGATGGGGCCCAGTGAGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTAAGTTGCTGCACTGAACTTTTTGATGGGGCCCAGTGAGTAAT  600

seq1  ATATTAGACCATGCGGAGCCTGGATTTTATTTAGATTATATTAAAGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGACCATGCGGAGCCTGGATTTTATTTAGATTATATTAAAGATCC  650

seq1  TCTGGGGCATAAGTGTCTATC-TTGGGGAGGGGGAGC  686
      ||||||||||||||||||||| |||||||||||||||
seq2  TCTGGGGCATAAGTGTCTATCTTTGGGGAGGGGGAGC  687

seq1: chr13_56035722_56036875
seq2: B6Ng01-184B23.g_64_1220 (reverse)

seq1  AAGACAGATACAAGGAGGCTCCCCG-TACCTAGGAGGGGACCCTGGCC-T  48
      |||||||||||||| ||   ||||| |||||  ||||   || ||||| |
seq2  AAGACAGATACAAGAAGCTCCCCCGTTACCTTAGAGGAACCCTTGGCCTT  50

seq1  CTTGTTCCCCTCCTCTGTTGTAACAACTACATA-ACTGTGATAAGAACAT  97
      |||||| |||||||| ||||| ||||||||||| |||||||  || ||||
seq2  CTTGTT-CCCTCCTC-GTTGT-ACAACTACATATACTGTGAATAG-ACAT  96

seq1  TA-CAACCATATAGCTGGGTTTCCTTCCTCTTGGCGCTT-GGCAGTGCCT  145
       | || |||||||||||||||||||||||| || ||||| ||||||||||
seq2  AACCACCCATATAGCTGGGTTTCCTTCCTCCTGACGCTTGGGCAGTGCCT  146

seq1  GGCTCAGCTCCTTTTAT-CCCCCACTATTCAGATGGG-AAGCTGAAGCCT  193
      ||||||||| ||||||| ||||||||||||||||||| ||||||||||||
seq2  GGCTCAGCT-CTTTTATCCCCCCACTATTCAGATGGGAAAGCTGAAGCCT  195

seq1  GGAGAGCAGATGCTGCTTGCCTGGCTGAGCCATGCTCCGGTGTCTT-GGC  242
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGAGAGCAGATGCTGCTTGCCTGGCTGAGCCATGCTCCGGTGTCTTGGGC  245

seq1  AGCTGGTGTCTCTTCTTCAAACTGGCCTTAGAGGGAGTTGTGGTCATCAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTGTCTCTTCTTCAAACTGGCCTTAGAGGGAGTTGTGGTCATCAG  295

seq1  GAAGAGTCAAGGCTATGGGATTGGAGGTTGGCACACTTGTGCAAGGATTC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCAAGGCTATGGGATTGGAGGTTGGCACACTTGTGCAAGGATTC  345

seq1  TATTTCTTCTCTTCCCAGTGGAAACCCTTCATCTGCCTTTACTGTCTCGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTCTCTTCCCAGTGGAAACCCTTCATCTGCCTTTACTGTCTCGA  395

seq1  AGTCTAATTCCAGGGCACACCTAGCAGGTGGCCAGAAGAATTTCTTTGAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAATTCCAGGGCACACCTAGCAGGTGGCCAGAAGAATTTCTTTGAA  445

seq1  CATGCAGATGGTGTTTGAAGACAGTTTTCAAACATGATTCAACTACCCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGATGGTGTTTGAAGACAGTTTTCAAACATGATTCAACTACCCAG  495

seq1  TGTACATGGGACCTGAATCCTGACTCACAGATGTTGCATAAGAGGTAGAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGGGACCTGAATCCTGACTCACAGATGTTGCATAAGAGGTAGAG  545

seq1  CTGTATGTTTTGATGTACCATAAAACATTTCCATAGGTTCAAGAAATGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTTTTGATGTACCATAAAACATTTCCATAGGTTCAAGAAATGAA  595

seq1  CGCAGAGTATGGTCAACCAGGGCATATTATACTGAGACATGCCATTGCTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAGTATGGTCAACCAGGGCATATTATACTGAGACATGCCATTGCTG  645

seq1  TATTAAAGAATATATACCAACCTTGGAAGATATTATCCTACTCAAGTAGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGAATATATACCAACCTTGGAAGATATTATCCTACTCAAGTAGA  695

seq1  TCAACATTTTGGCTTTCTTGGTCTCTCTGTCCCAAAGAGCAAATCTGGAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTTTGGCTTTCTTGGTCTCTCTGTCCCAAAGAGCAAATCTGGAC  745

seq1  ATACAAGTAGGCCAGTCTTCTAGAATGTTCTTCTGTGTGGCTCTTCTTTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTAGGCCAGTCTTCTAGAATGTTCTTCTGTGTGGCTCTTCTTTC  795

seq1  CTCAGACAGTCTTCTTGGTCTTAGAGTAATAGTATGAGGGAAGTGGGCAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACAGTCTTCTTGGTCTTAGAGTAATAGTATGAGGGAAGTGGGCAT  845

seq1  GAGAGGGGAGAGACTAGTCCCCCGAAGGATCTCCTAGATCAAAGGGTGGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGAGAGACTAGTCCCCCGAAGGATCTCCTAGATCAAAGGGTGGC  895

seq1  TGGCCTCATTGTTGTAGTTTTCTGTGTTTCTTCTGTGGCTTCCTGCGGGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCATTGTTGTAGTTTTCTGTGTTTCTTCTGTGGCTTCCTGCGGGG  945

seq1  CCCCTTGGGACATCTACTTCTGTTAGTGAAAAAGAAAGAATTTAGCTTTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGGGACATCTACTTCTGTTAGTGAAAAAGAAAGAATTTAGCTTTC  995

seq1  TCAGTCCCTGGGTCACTCATTGACTTGTTTTACACATGTAAACCTAGATT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCCTGGGTCACTCATTGACTTGTTTTACACATGTAAACCTAGATT  1045

seq1  ATGGTTGAAGACCATAATCTAGACCTTGAAGGTCTTTTGGCAGTCTTTGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGAAGACCATAATCTAGACCTTGAAGGTCTTTTGGCAGTCTTTGA  1095

seq1  GTAGGAAATCACAGGCTATCTCAACATCTGACTGTTTTTTTCATATTTAC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAATCACAGGCTATCTCAACATCTGACTGTTTTTTTCATATTTAC  1145

seq1  AGTAAGGAATTC  1154
      ||||||||||||
seq2  AGTAAGGAATTC  1157