BAC Information

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BAC

Clone NameB6Ng01-184D09
Chromosome13 (Build37)
Map Location 39,569,748 - 39,709,793
singlet/doubletdoublet
Overlap genenone
Upstream geneBmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3, EG666867, LOC100041779
Downstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184D09.bB6Ng01-184D09.g
ACCGA009643GA009644
length1,0611,127
definitionB6Ng01-184D09.b B6Ng01-184D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,569,748 - 39,570,636)(39,708,668 - 39,709,793)
sequence
gaattctttgtttagctctgtaccctatttttaatagggttatttgattt
ttctggagtccagcttcttgagttctttgtatatattggatattagtcct
ttataggatttaggattggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgctgtaagatcaagaatcaacaagcgggacct
cataaaattgcaatgcttctctaagtcaagacactgtcaataaggcagct
aggtcttacgtgtgcgtcagtcacaataccctcaagtgaagatatagatg
taaaaaaaagagaccctaattcttttatccaggcaatcattgcaggatgt
gttatcattttatttatgctaattattcattagcataaatgaagcacaac
ttaaaataagcaatggagaaaccaagattgctaaacacaaaggtctactt
tctttggctttttgttgttgttgttgttgttttgttttgttttatcaaga
cagggtttctctgtgtagtcctggctatcctggaacacactctgtaggcc
tggctggcctcaaacgcagaaatccgcctgcctctgactcccaagtgctg
ggattaaaggcatgtgccaccatgccgggctaaaggtctactttcttcag
tggaaggaggaatgacaccgggttacctgaactactagagcataagtggt
cagacagcctggtctttgctattgtatttagatccatcctccacctgatt
tcccccccaaatcctgtgaactgctgagctcctgatcccttgctttgtct
ctcagtgagtagaacacatgaaaaggaccacacggactctacatcctcat
caacagcaatcttaaagagcatccttgtcttattacaaatcctttctctc
gatcctagtcctgagccccgtttgcttatcagacagtagaactcattctt
attggaaagtgcttctgatactctccaagccaaatttgatgtagccatcc
ctgaaacttgggtgtgaagaattgtctcatggagaatttcccaccccccc
ctcccaaagtt

gaattctgcaggggagtccaaggaacccaaacatcaatccacataacgct
gcagtccagcaaatctcactacagagaaaagttctgggaagaatgagttg
tcagcagacatttaggggaaacaacattgatgtggccacaaaaatatctt
cataactaccgggtcaagcattctctttgatttttaccaaggggaaaata
tgtatatatcttctgtcagaagaaaagcttggagtgaataaatcagttca
agcaggatgtactgggtgtctaccagcatcagactcaatgccagatactg
cattgcactatcaggaggtcaggaaaggctcagggatgtctactcaagta
atagcatgacagaaaaaaaaatgttctaatttaaaatataaaatgcatgc
attcttcctcattctgttatataataaggctctgtatacttaaaagcaac
acaagcaaatatacgacatcttcctatgttctttctctaccactatcctt
ctctcttccctactttgttcatttctctcacaccttacccccttttcttt
cactttatcttatttcatccttttcaacttcttcctcttcctcctcttat
gtttccccttctcagttctctctctctctctccctctatctctttctctc
cctccctccctccctccctctctctctctctctctcttccccccttcatt
tctttcatagaaaagtataaaatcaatatgtagagatgaaatatattgga
acttcaaaacttatacctaggatcaacgtttcagggcaacatatatttaa
actttaacattcaatccataataaaagctaaagaattcctctttaaggtt
tgttttataattgcaatttctatattagataaaggtttaaaataggattt
taggaatataaaacaaatcacatgcaaaagatactttgataaacctgaaa
tttaaatacacttatggtttcacaggtctggtctgccatggatcaaaagt
atttgtgatgcaaaaagacatgcttaacataggtcatgttacaaactcaa
ttctgtcatcatctctaaccatacaaatagactactatgtgcaaatatgt
atatcatgattataatgtataaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_39569748_39570636
seq2: B6Ng01-184D09.b_46_934

seq1  GAATTCTTTGTTTAGCTCTGTACCCTATTTTTAATAGGGTTATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCTATTTTTAATAGGGTTATTTGATTT  50

seq1  TTCTGGAGTCCAGCTTCTTGAGTTCTTTGTATATATTGGATATTAGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCAGCTTCTTGAGTTCTTTGTATATATTGGATATTAGTCCT  100

seq1  TTATAGGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTGACAGTGCTGTAAGATCAAGAATCAACAAGCGGGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACAGTGCTGTAAGATCAAGAATCAACAAGCGGGACCT  200

seq1  CATAAAATTGCAATGCTTCTCTAAGTCAAGACACTGTCAATAAGGCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTGCAATGCTTCTCTAAGTCAAGACACTGTCAATAAGGCAGCT  250

seq1  AGGTCTTACGTGTGCGTCAGTCACAATACCCTCAAGTGAAGATATAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTACGTGTGCGTCAGTCACAATACCCTCAAGTGAAGATATAGATG  300

seq1  TAAAAAAAAGAGACCCTAATTCTTTTATCCAGGCAATCATTGCAGGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAGAGACCCTAATTCTTTTATCCAGGCAATCATTGCAGGATGT  350

seq1  GTTATCATTTTATTTATGCTAATTATTCATTAGCATAAATGAAGCACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATTTTATTTATGCTAATTATTCATTAGCATAAATGAAGCACAAC  400

seq1  TTAAAATAAGCAATGGAGAAACCAAGATTGCTAAACACAAAGGTCTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAGCAATGGAGAAACCAAGATTGCTAAACACAAAGGTCTACTT  450

seq1  TCTTTGGCTTTTTGTTGTTGTTGTTGTTGTTTTGTTTTGTTTTATCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCTTTTTGTTGTTGTTGTTGTTGTTTTGTTTTGTTTTATCAAGA  500

seq1  CAGGGTTTCTCTGTGTAGTCCTGGCTATCCTGGAACACACTCTGTAGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTGTAGTCCTGGCTATCCTGGAACACACTCTGTAGGCC  550

seq1  TGGCTGGCCTCAAACGCAGAAATCCGCCTGCCTCTGACTCCCAAGTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCCTCAAACGCAGAAATCCGCCTGCCTCTGACTCCCAAGTGCTG  600

seq1  GGATTAAAGGCATGTGCCACCATGCCGGGCTAAAGGTCTACTTTCTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGCATGTGCCACCATGCCGGGCTAAAGGTCTACTTTCTTCAG  650

seq1  TGGAAGGAGGAATGACACCGGGTTACCTGAACTACTAGAGCATAAGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAGGAATGACACCGGGTTACCTGAACTACTAGAGCATAAGTGGT  700

seq1  CAGACAGCCTGGTCTTTGCTATTGTATTTAGATCCATCCTCCACCTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCCTGGTCTTTGCTATTGTATTTAGATCCATCCTCCACCTGATT  750

seq1  TCCCCCCCAAATCCTGTGAACTGCTGAGCTCCTGATCCCTTGCTTTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCAAATCCTGTGAACTGCTGAGCTCCTGATCCCTTGCTTTGTCT  800

seq1  CTCAGTGAGTAGAACACATGAAAAGGACCACACGGACTCTACATCCTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGAGTAGAACACATGAAAAGGACCACACGGACTCTACATCCTCAT  850

seq1  CAACAGCAATCTTAAAGAGCATCCTTGTCTTATTACAAA  889
      |||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCAATCTTAAAGAGCATCCTTGTCTTATTACAAA  889


seq1: chr13_39708668_39709793
seq2: B6Ng01-184D09.g_65_1191 (reverse)

seq1  TATATATTATACA-TATATACATGATATACATATTTGCACATAGTAGTTC  49
      ||||| ||||||| ||||  ||||||||||||||||||||||||||| ||
seq2  TATAT-TTATACATTATAATCATGATATACATATTTGCACATAGTAG-TC  48

seq1  TA-TTGTATTGGTTAGAGAATGATGACAGGAAATGAGTTTGT-ACATGAC  97
      || ||||| ||||||||| ||||||||| ||| ||||||||| |||||||
seq2  TATTTGTA-TGGTTAGAG-ATGATGACA-GAATTGAGTTTGTAACATGAC  95

seq1  CTATG-TAAGCATGTC-TTTTGCATCACAAATACTTTTGATCCATGGCAG  145
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  CTATGTTAAGCATGTCTTTTTGCATCACAAATACTTTTGATCCATGGCAG  145

seq1  ACCAGACCTGTGAAACCATAAGTGTATTTAAATTTCAGGTTTATCAAAGT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACCTGTGAAACCATAAGTGTATTTAAATTTCAGGTTTATCAAAGT  195

seq1  ATCTTTTGCATGTGATTTGTTTTATATTCCTAAAATCCTATTTTAAACC-  244
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTTTTGCATGTGATTTGTTTTATATTCCTAAAATCCTATTTTAAACCT  245

seq1  TTATCTAATATAGAATTTGCAATTATAAAACAAACCTTAAAGAGGAATTC  294
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTATCTAATATAGAAATTGCAATTATAAAACAAACCTTAAAGAGGAATTC  295

seq1  TTTAGCTTTTATTATGGATTGAATGTTAAAGTTTAAATATATGTTGCCCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTTTATTATGGATTGAATGTTAAAGTTTAAATATATGTTGCCCT  345

seq1  GAAACGTTGATCCTAGGTATAAGTTTTGAAGTTCCAATATATTTCATCTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGTTGATCCTAGGTATAAGTTTTGAAGTTCCAATATATTTCATCTC  395

seq1  TACATATTGATTTTATACTTTTCTATGAAAGAAATGAAGGGGGGAAGAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTGATTTTATACTTTTCTATGAAAGAAATGAAGGGGGGAAGAGA  445

seq1  GAGAGAGAGAGAGAGGGAGGGAGGGAGGGAGGGAGAGAAAGAGATAGAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGGGAGGGAGGGAGGGAGGGAGAGAAAGAGATAGAGG  495

seq1  GAGAGAGAGAGAGAGAACTGAGAAGGGGAAACATAAGAGGAGGAAGAGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAACTGAGAAGGGGAAACATAAGAGGAGGAAGAGGA  545

seq1  AGAAGTTGAAAAGGATGAAATAAGATAAAGTGAAAGAAAAGGGGGTAAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGAAAAGGATGAAATAAGATAAAGTGAAAGAAAAGGGGGTAAGG  595

seq1  TGTGAGAGAAATGAACAAAGTAGGGAAGAGAGAAGGATAGTGGTAGAGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGAAATGAACAAAGTAGGGAAGAGAGAAGGATAGTGGTAGAGAA  645

seq1  AGAACATAGGAAGATGTCGTATATTTGCTTGTGTTGCTTTTAAGTATACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATAGGAAGATGTCGTATATTTGCTTGTGTTGCTTTTAAGTATACA  695

seq1  GAGCCTTATTATATAACAGAATGAGGAAGAATGCATGCATTTTATATTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTATTATATAACAGAATGAGGAAGAATGCATGCATTTTATATTTT  745

seq1  AAATTAGAACATTTTTTTTTCTGTCATGCTATTACTTGAGTAGACATCCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAACATTTTTTTTTCTGTCATGCTATTACTTGAGTAGACATCCC  795

seq1  TGAGCCTTTCCTGACCTCCTGATAGTGCAATGCAGTATCTGGCATTGAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTTCCTGACCTCCTGATAGTGCAATGCAGTATCTGGCATTGAGT  845

seq1  CTGATGCTGGTAGACACCCAGTACATCCTGCTTGAACTGATTTATTCACT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTGGTAGACACCCAGTACATCCTGCTTGAACTGATTTATTCACT  895

seq1  CCAAGCTTTTCTTCTGACAGAAGATATATACATATTTTCCCCTTGGTAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTTTCTTCTGACAGAAGATATATACATATTTTCCCCTTGGTAAA  945

seq1  AATCAAAGAGAATGCTTGACCCGGTAGTTATGAAGATATTTTTGTGGCCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGAGAATGCTTGACCCGGTAGTTATGAAGATATTTTTGTGGCCA  995

seq1  CATCAATGTTGTTTCCCCTAAATGTCTGCTGACAACTCATTCTTCCCAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGTTGTTTCCCCTAAATGTCTGCTGACAACTCATTCTTCCCAGA  1045

seq1  ACTTTTCTCTGTAGTGAGATTTGCTGGACTGCAGCGTTATGTGGATTGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTCTGTAGTGAGATTTGCTGGACTGCAGCGTTATGTGGATTGAT  1095

seq1  GTTTGGGTTCCTTGGACTCCCCTGCAGAATTC  1126
      ||||||||||||||||||||||||||||||||
seq2  GTTTGGGTTCCTTGGACTCCCCTGCAGAATTC  1127


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