BAC Information

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BAC

Clone NameB6Ng01-184E12
Chromosome13 (Build37)
Map Location 55,365,684 - 55,523,597
singlet/doubletdoublet
Overlap geneNsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12
Upstream geneLOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4
Downstream geneGprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184E12.bB6Ng01-184E12.g
ACCGA009697GA009698
length8311,127
definitionB6Ng01-184E12.b B6Ng01-184E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,365,684 - 55,366,514)(55,522,477 - 55,523,597)
sequence
gaattccctgagaggctgggtgggtagtttttggtcattcagggaggttg
gttgctgtttgtttgtaggtgtggtaaaagaagaaacaagaaaaaagaaa
acaccaactacttagaggtatgccacaagaattaagccattataaaaaca
tcaaattcaagtaacacaaagttatgtattgtaaataaattttagttaca
caaatttacaaataggtttggattgaaatatctaaaaattactggaggag
gattcattgttgataaggcacaatccagcaaggttgggagaaatgcttaa
tgagatatactatgtaaagcaagtctttattgtaataaagatgagcattt
gttgaaaaggataccagtaaaaaatattcataaaagcacaaaggaggagc
ttgcttatgcataagacatacaaagaggaaatgaactgtggtctcttaag
tacacaaatgacatttttagagagagagaaagttggaaaccacattcacg
taatttatcatagcatattgttgttttattatgtgcctaattaaaaattc
aggcttatatgttatgttatgcaggagaaaatagtacgtatgatatttgt
atttttaagaattcaaatggaagttttcaagtgtttccttgtgggtatct
tgaggaggtgggggcagtatagactagtatatatagaaattactcagtgt
caatatgtatatttgattcgtcttatagagatcctatatttgagaagtgt
ttggccagacatagccttgatgtaagctgcgtcgagtattttgctttttc
cttttggctgtattagaaattaatccactgg
gaattctggggaaagaggccaccattgtccagatgagcttgagggtctag
aagcttggggttctatggtttgatgacaagcaggtgcaggcagggtattg
gtccctacatatgtccttccgactccggaagtgcttcgctcttgttatct
acctctcagaccattgcagcaaacacaacccgtgccacaaaggagggaca
tgtatcaacacccccaatgggccacactgtctctgccctgaacacctcac
tgggaaacattgccagaaaggtaagaggaactgcctcccagcaagatgtc
cctggagacccggtgctttgccatggtcccattgacttccttgtgtcccc
agagaaatgctttgagcctcagcttctcaagttcttccacgagaatgagc
tatggtttagaacggggccaggaggtgtggccaggtgcgagtgcaaaggt
tctgaggctcactgcaagccggtggccagccagggtaagtgggtgtgcag
ggactgtggggaggagggcagagagtcaggaacccctggtagaaggctgg
gtgcaatgatgtacacaggtaaggctcagtttgcacctctccccacccca
cccccagcctgcagcatcaatccgtgccttaatgggggcagctgcctcct
cgtggaggaccacccactgtgccgttgccctacaggctacactggatatt
tttgcgacttgggtgagtaagaccccgtgtggaaaggcttgcggaggtgg
atagagagaatggaagtgaaccagagggctccaacagactcatccgccga
ctgcagggagccatctctctttctctagaccctttgggcgacctgctatg
aaggcagggggctcagctaccggggccaggctgggaactacgcaatcggt
gcgccattgtcagcggtggaccgttggaaggccaccctaccgggaacatg
actgagaagcaagccgctaagctggggccttgggccaccacgcattttgc
cggtttcgcgagaagggacaggcaggcacttgcttttctcttagtcctcg
aggtcttcccccacgttcttacagtgctccctctgagattgccagcacca
gaataatgacacaccttcaatggtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55365684_55366514
seq2: B6Ng01-184E12.b_47_877

seq1  GAATTCCCTGAGAGGCTGGGTGGGTAGTTTTTGGTCATTCAGGGAGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAGAGGCTGGGTGGGTAGTTTTTGGTCATTCAGGGAGGTTG  50

seq1  GTTGCTGTTTGTTTGTAGGTGTGGTAAAAGAAGAAACAAGAAAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTTGTTTGTAGGTGTGGTAAAAGAAGAAACAAGAAAAAAGAAA  100

seq1  ACACCAACTACTTAGAGGTATGCCACAAGAATTAAGCCATTATAAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAACTACTTAGAGGTATGCCACAAGAATTAAGCCATTATAAAAACA  150

seq1  TCAAATTCAAGTAACACAAAGTTATGTATTGTAAATAAATTTTAGTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCAAGTAACACAAAGTTATGTATTGTAAATAAATTTTAGTTACA  200

seq1  CAAATTTACAAATAGGTTTGGATTGAAATATCTAAAAATTACTGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTACAAATAGGTTTGGATTGAAATATCTAAAAATTACTGGAGGAG  250

seq1  GATTCATTGTTGATAAGGCACAATCCAGCAAGGTTGGGAGAAATGCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTGTTGATAAGGCACAATCCAGCAAGGTTGGGAGAAATGCTTAA  300

seq1  TGAGATATACTATGTAAAGCAAGTCTTTATTGTAATAAAGATGAGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATACTATGTAAAGCAAGTCTTTATTGTAATAAAGATGAGCATTT  350

seq1  GTTGAAAAGGATACCAGTAAAAAATATTCATAAAAGCACAAAGGAGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAAGGATACCAGTAAAAAATATTCATAAAAGCACAAAGGAGGAGC  400

seq1  TTGCTTATGCATAAGACATACAAAGAGGAAATGAACTGTGGTCTCTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATGCATAAGACATACAAAGAGGAAATGAACTGTGGTCTCTTAAG  450

seq1  TACACAAATGACATTTTTAGAGAGAGAGAAAGTTGGAAACCACATTCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAATGACATTTTTAGAGAGAGAGAAAGTTGGAAACCACATTCACG  500

seq1  TAATTTATCATAGCATATTGTTGTTTTATTATGTGCCTAATTAAAAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATCATAGCATATTGTTGTTTTATTATGTGCCTAATTAAAAATTC  550

seq1  AGGCTTATATGTTATGTTATGCAGGAGAAAATAGTACGTATGATATTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTATATGTTATGTTATGCAGGAGAAAATAGTACGTATGATATTTGT  600

seq1  ATTTTTAAGAATTCAAATGGAAGTTTTCAAGTGTTTCCTTGTGGGTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAGAATTCAAATGGAAGTTTTCAAGTGTTTCCTTGTGGGTATCT  650

seq1  TGAGGAGGTGGGGGCAGTATAGACTAGTATATATAGAAATTACTCAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGTGGGGGCAGTATAGACTAGTATATATAGAAATTACTCAGTGT  700

seq1  CAATATGTATATTTGATTCGTCTTATAGAGATCCTATATTTGAGAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGTATATTTGATTCGTCTTATAGAGATCCTATATTTGAGAAGTGT  750

seq1  TTGGCCAGACATAGCCTTGATGTAAGCTGCGTCGAGTATTTTGCTTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAGACATAGCCTTGATGTAAGCTGCGTCGAGTATTTTGCTTTTTC  800

seq1  CTTTTGGCTGTATTAGAAATTAATCCACTGG  831
      |||||||||||||||||||||||||||||||
seq2  CTTTTGGCTGTATTAGAAATTAATCCACTGG  831

seq1: chr13_55522477_55523597
seq2: B6Ng01-184E12.g_62_1188 (reverse)

seq1  AGCACCA-TGGACGTGTGTCATTATCTGGGTTCCTGCAATCTCAAGAGGG  49
      ||||||| || | ||||||||||||   ||| |  |||||||| ||||||
seq2  AGCACCATTGAAGGTGTGTCATTATTCTGGTGCTGGCAATCTC-AGAGGG  49

seq1  AGCACTGTTAGAACGT-GGGGAGGCCCTCGAGGACCCTAAGAG-AAAGCA  97
      |||||||| ||||||| ||||| | |||||||||  ||||||| ||||||
seq2  AGCACTGTAAGAACGTGGGGGAAGACCTCGAGGA--CTAAGAGAAAAGCA  97

seq1  AGTTCCCCTGCCCGGTCCCTTCTCGCG-AACCGGCAAAATGCGTGGTGGC  146
      |||   |||| || ||||||||||||| ||||||||||||||||||||||
seq2  AGT--GCCTG-CCTGTCCCTTCTCGCGAAACCGGCAAAATGCGTGGTGGC  144

seq1  CC-AGGCCCCAGCTTAGC-GCTTGCTTCTCAGTCATGTT-CCGGTA-GGT  192
      || ||||||||||||||| |||||||||||||||||||| |||||| |||
seq2  CCAAGGCCCCAGCTTAGCGGCTTGCTTCTCAGTCATGTTCCCGGTAGGGT  194

seq1  GGCCT--CCACGGTCCACCGCTGAC-ATGGCGCACCCGATTGCGTAGTT-  238
      |||||  | |||||||||||||||| |||||||| |||||||||||||| 
seq2  GGCCTTCCAACGGTCCACCGCTGACAATGGCGCA-CCGATTGCGTAGTTC  243

seq1  CCAGCCTGGCCCCGGTAGCTGAGCCCCCTGCCTTCATAGCAGGTCGCCCA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGCCCCGGTAGCTGAGCCCCCTGCCTTCATAGCAGGTCGCCCA  293

seq1  AA-GGTCTAGAGAAAGAGAGATGGCTCCCTGCAGTCGGCGGATGAGTCTG  337
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCTAGAGAAAGAGAGATGGCTCCCTGCAGTCGGCGGATGAGTCTG  343

seq1  TTGGAGCCCTCTGGTTCACTTCCATTCTCTCTATCCACCTCCGCAAGCCT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCCCTCTGGTTCACTTCCATTCTCTCTATCCACCTCCGCAAGCCT  393

seq1  TTCCACACGGGGTCTTACTCACCCAAGTCGCAAAAATATCCAGTGTAGCC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACGGGGTCTTACTCACCCAAGTCGCAAAAATATCCAGTGTAGCC  443

seq1  TGTAGGGCAACGGCACAGTGGGTGGTCCTCCACGAGGAGGCAGCTGCCCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGCAACGGCACAGTGGGTGGTCCTCCACGAGGAGGCAGCTGCCCC  493

seq1  CATTAAGGCACGGATTGATGCTGCAGGCTGGGGGTGGGGTGGGGAGAGGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGGCACGGATTGATGCTGCAGGCTGGGGGTGGGGTGGGGAGAGGT  543

seq1  GCAAACTGAGCCTTACCTGTGTACATCATTGCACCCAGCCTTCTACCAGG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGAGCCTTACCTGTGTACATCATTGCACCCAGCCTTCTACCAGG  593

seq1  GGTTCCTGACTCTCTGCCCTCCTCCCCACAGTCCCTGCACACCCACTTAC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGACTCTCTGCCCTCCTCCCCACAGTCCCTGCACACCCACTTAC  643

seq1  CCTGGCTGGCCACCGGCTTGCAGTGAGCCTCAGAACCTTTGCACTCGCAC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGGCCACCGGCTTGCAGTGAGCCTCAGAACCTTTGCACTCGCAC  693

seq1  CTGGCCACACCTCCTGGCCCCGTTCTAAACCATAGCTCATTCTCGTGGAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACACCTCCTGGCCCCGTTCTAAACCATAGCTCATTCTCGTGGAA  743

seq1  GAACTTGAGAAGCTGAGGCTCAAAGCATTTCTCTGGGGACACAAGGAAGT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGAGAAGCTGAGGCTCAAAGCATTTCTCTGGGGACACAAGGAAGT  793

seq1  CAATGGGACCATGGCAAAGCACCGGGTCTCCAGGGACATCTTGCTGGGAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGACCATGGCAAAGCACCGGGTCTCCAGGGACATCTTGCTGGGAG  843

seq1  GCAGTTCCTCTTACCTTTCTGGCAATGTTTCCCAGTGAGGTGTTCAGGGC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCTCTTACCTTTCTGGCAATGTTTCCCAGTGAGGTGTTCAGGGC  893

seq1  AGAGACAGTGTGGCCCATTGGGGGTGTTGATACATGTCCCTCCTTTGTGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGTGTGGCCCATTGGGGGTGTTGATACATGTCCCTCCTTTGTGG  943

seq1  CACGGGTTGTGTTTGCTGCAATGGTCTGAGAGGTAGATAACAAGAGCGAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGTTGTGTTTGCTGCAATGGTCTGAGAGGTAGATAACAAGAGCGAA  993

seq1  GCACTTCCGGAGTCGGAAGGACATATGTAGGGACCAATACCCTGCCTGCA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCCGGAGTCGGAAGGACATATGTAGGGACCAATACCCTGCCTGCA  1043

seq1  CCTGCTTGTCATCAAACCATAGAACCCCAAGCTTCTAGACCCTCAAGCTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGTCATCAAACCATAGAACCCCAAGCTTCTAGACCCTCAAGCTC  1093

seq1  ATCTGGACAATGGTGGCCTCTTTCCCCAGAATTC  1121
      ||||||||||||||||||||||||||||||||||
seq2  ATCTGGACAATGGTGGCCTCTTTCCCCAGAATTC  1127