BAC Information

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BAC

Clone NameB6Ng01-184K13
Chromosome13 (Build37)
Map Location 81,746,122 - 81,915,664
singlet/doubletdoublet
Overlap geneGpr98, Lysmd3, Polr3g, 2900024O10Rik
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneCetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184K13.bB6Ng01-184K13.g
ACCGA009979GA009980
length1,0451,126
definitionB6Ng01-184K13.b B6Ng01-184K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,746,122 - 81,747,154)(81,914,535 - 81,915,664)
sequence
gaattcctcaggttgtttcatcttcttatcttgttggacatggtgttctc
tgggccatggtgaaggttcaagagaattgctttccatgtgattctatatg
caggtccacccaaagaccgtgattttacctatgttctcagagtttgttgt
gtccaccctcagcaaggcctggctcgtctgctctgtttccctctatgttg
gggaggtcagggaggggaacaggagggagtgtgtctctgccctgctcagc
agcagcagatgtgaagctccacttggaactcacagcccaccagcaaccat
ggcttccagatagtgatgtatgtccaacattatttctcaattaaatttct
tagcacataaataaccctaaatgtcatacatactgttgctgttaaatgtt
tactcttgtatctaggctggtatctttctccatagagcttcccattaatg
agcaccttaggaaatgtaagcagtatattatattctaagaaaatgagaat
agatccctagttaaagatcaataagtctgtaagggtacagtagaatgaga
aaatgggttttaaaaatgtaaatttcagacagcatctgagacctatagaa
aagcattcctcgttccactatacctctgtgatgtccccaacaatatttta
catttgcatacattttttactttctttgttctataaaactacaaaaacct
catgaaactacttaaatgttggaaaatggaatttgaggtaacttaaatcc
atattcctgggccatggttgctttgaatagttccagaagaaattaactct
ttattatcttttaaaaaggaaactgagtaaaaactaaatataaaaaaaga
aagactcaaaaacaacagtgtgcaaattaaatattaggatgaatttctgg
tttcgttgaagactcagttgtgttcatgtgatttatttccctgggaagct
gtctaatgagaggatattttgctgaagcagacccatgagtagatgttctg
ctggaggtgggtttcctggaagcttctgggtgaaaaggcatataa

gaattccgtgtgtctagaacagggttgatccttaaactcttagcattaag
tgaaataatccaagcaccaaaaaaagatattctgcttatagaaagtaacc
tcgaataagcagttcatagagacatctggtgatgagaggaatggagagct
cgctgttggttaactggtgccatctcagattggaattaatgaaaggggag
gcaccgttttataaaggcactgtgaagaaacaaccagacaagtcaaaaaa
gggaagtttcctttatgataactgcccttgcctccacaaatgagagtggg
agaaaagagattgacttatattttaaaagacttagggactccagaaaacc
cttgtcctggcttagatgcaagttttgacaaagcagctgtaaaaggcatt
atggagataattgaggagatttgtgtatgaatggggaattcaattacaca
aagaaatcattaattttctcaggcattctaataatatttttgtccactta
tgaaaatgttctttttaaagatgcaaactgaggtttttcaaggtaaaatg
ttcaaaatgtctcagattcaccttaaaatagcacacaaaaccagcaacca
acacccgcagagtttaagaattaaaaggtagaacaataatataggaaaac
agaatgagggactggcgataagtggtgcctgggagctgtgggtctgtaaa
actgtccgcagaatggcagctgcgctgacagtttaaatgattgccactgt
cacattcagtccctccatgggacagaagagaggccagggaacacctgtgc
atcggtaatatatagcaaacagaagattagacagccttcagacaacaagg
cagttctgagtcccatgaaaaaagaaagcaaaaacttcagtgacttacag
ggttgtaagaaaaatcgcaatcagtccattaggcccccccacccaaaaaa
agttttccccttagaggaagttcacaaagggtcaagtgtcccagttgagc
atacccagtgactttctgtcactgccagcccaggataagtgcagtgtgac
ctacagatgctgagtgatactaactctgctgctcacagttagtcctctca
tgtgaatgtaagtaatgtgtcttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81746122_81747154
seq2: B6Ng01-184K13.b_43_1087

seq1  GAATTCCTCAGGTTGTTTCATCTTCTTATCTTGTTGGACATGGTGTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGGTTGTTTCATCTTCTTATCTTGTTGGACATGGTGTTCTC  50

seq1  TGGGCCATGGTGAAGGTTCAAGAGAATTGCTTTCCATGTGATTCTATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCATGGTGAAGGTTCAAGAGAATTGCTTTCCATGTGATTCTATATG  100

seq1  CAGGTCCACCCAAAGACCGTGATTTTACCTATGTTCTCAGAGTTTGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCACCCAAAGACCGTGATTTTACCTATGTTCTCAGAGTTTGTTGT  150

seq1  GTCCACCCTCAGCAAGGCCTGGCTCGTCTGCTCTGTTTCCCTCTATGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCCTCAGCAAGGCCTGGCTCGTCTGCTCTGTTTCCCTCTATGTTG  200

seq1  GGGAGGTCAGGGAGGGGAACAGGAGGGAGTGTGTCTCTGCCCTGCTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTCAGGGAGGGGAACAGGAGGGAGTGTGTCTCTGCCCTGCTCAGC  250

seq1  AGCAGCAGATGTGAAGCTCCACTTGGAACTCACAGCCCACCAGCAACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGATGTGAAGCTCCACTTGGAACTCACAGCCCACCAGCAACCAT  300

seq1  GGCTTCCAGATAGTGATGTATGTCCAACATTATTTCTCAATTAAATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCAGATAGTGATGTATGTCCAACATTATTTCTCAATTAAATTTCT  350

seq1  TAGCACATAAATAACCCTAAATGTCATACATACTGTTGCTGTTAAATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATAAATAACCCTAAATGTCATACATACTGTTGCTGTTAAATGTT  400

seq1  TACTCTTGTATCTAGGCTGGTATCTTTCTCCATAGAGCTTCCCATTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGTATCTAGGCTGGTATCTTTCTCCATAGAGCTTCCCATTAATG  450

seq1  AGCACCTTAGGAAATGTAAGCAGTATATTATATTCTAAGAAAATGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTTAGGAAATGTAAGCAGTATATTATATTCTAAGAAAATGAGAAT  500

seq1  AGATCCCTAGTTAAAGATCAATAAGTCTGTAAGGGTACAGTAGAATGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTAGTTAAAGATCAATAAGTCTGTAAGGGTACAGTAGAATGAGA  550

seq1  AAATGGGTTTTAAAAATGTAAATTTCAGACAGCATCTGAGACCTATAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTTTTAAAAATGTAAATTTCAGACAGCATCTGAGACCTATAGAA  600

seq1  AAGCATTCCTCGTTCCACTATACCTCTGTGATGTCCCCAACAATATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCCTCGTTCCACTATACCTCTGTGATGTCCCCAACAATATTTTA  650

seq1  CATTTGCATACATTTTTTACTTTCTTTGTTCTATAAAACTACAAAAACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCATACATTTTTTACTTTCTTTGTTCTATAAAACTACAAAAACCT  700

seq1  CATGAAACTACTTAAATGTTGGAAAATGGAATTTGAGGTAACTTAAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAACTACTTAAATGTTGGAAAATGGAATTTGAGGTAACTTAAATCC  750

seq1  ATATTCCTGGGCCATGGTTGCTTTGAATAGTTCCAGAAGAAATTAACTC-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATTCCTGGGCCATGGTTGCTTTGAATAGTTCCAGAAGAAATTAACTCT  800

seq1  TTATTATC-TTTAAAAAGGAAACTGAGT-AAAACTAAATATAAAAAAAGA  847
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  TTATTATCTTTTAAAAAGGAAACTGAGTAAAAACTAAATATAAAAAAAGA  850

seq1  AAGACTC-AAAACAACAGTGTGC-AATTAAATA-TAGGATGAATTTCTGG  894
      ||||||| ||||||||||||||| ||||||||| ||||||||||||||||
seq2  AAGACTCAAAAACAACAGTGTGCAAATTAAATATTAGGATGAATTTCTGG  900

seq1  TTTCGTTGAAGACTCAGTTGTG-TCATGTGA-TTATTTCCCT-GGAAGCT  941
      |||||||||||||||||||||| |||||||| |||||||||| |||||||
seq2  TTTCGTTGAAGACTCAGTTGTGTTCATGTGATTTATTTCCCTGGGAAGCT  950

seq1  GTCTTATGAGAGGATATTTTGCTGAAGCAGACACATGAG-AGATGTTCTG  990
      |||| ||||||||||||||||||||||||||| |||||| ||||||||||
seq2  GTCTAATGAGAGGATATTTTGCTGAAGCAGACCCATGAGTAGATGTTCTG  1000

seq1  CTGGAGGTGTGTTT-CTGGAAGCTTCT-GGTGAAAGGGCATATAA  1033
      ||||||||| |||| |||||||||||| ||||||| |||||||||
seq2  CTGGAGGTGGGTTTCCTGGAAGCTTCTGGGTGAAAAGGCATATAA  1045


seq1: chr13_81914535_81915664
seq2: B6Ng01-184K13.g_68_1193 (reverse)

seq1  ATGAAGACACATTACTTACATCTTCCTTTAAGAGGACCTACTGTGAGCAG  50
      ||||||||||||||||||||  |||   | |||||||  |||||||||||
seq2  ATGAAGACACATTACTTACA--TTCACATGAGAGGACTAACTGTGAGCAG  48

seq1  CAGAGGTAGTTATCACTCAGCATCTGTAGGGTCACACCTGCACTTAATCC  100
      ||||| ||| |||||||||||||||||| ||||||| |||||||| ||||
seq2  CAGAGTTAG-TATCACTCAGCATCTGTA-GGTCACA-CTGCACTT-ATCC  94

seq1  TGGGCTGGCAGTGACAGAAAAGTCACTGGGTATGCTCAACTGGGACACTT  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGGCTGGCAGTGACAG-AAAGTCACTGGGTATGCTCAACTGGGACACTT  143

seq1  GA-CCTTTGTGAACTTCCTCTAAGGGG-AAACTTTTTTTGGGT-GGGGGG  197
      || |||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  GACCCTTTGTGAACTTCCTCTAAGGGGAAAACTTTTTTTGGGTGGGGGGG  193

seq1  CCTAATGGACTGATTGCGATTTTTCTTACAACCCTGTAAGTCACTGAAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGGACTGATTGCGATTTTTCTTACAACCCTGTAAGTCACTGAAGT  243

seq1  TTTTGCTTTCTTTTTTCATGGGACTCAGAACTGCCTTGTTGTCTGAAGGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTCTTTTTTCATGGGACTCAGAACTGCCTTGTTGTCTGAAGGC  293

seq1  TGTCTAATCTTCTGTTTGCTATATATTACCGATGCACAGGTGTTCCCTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATCTTCTGTTTGCTATATATTACCGATGCACAGGTGTTCCCTGG  343

seq1  CCTCTCTTCTGTCCCATGGAGGGACTGAATGTGACAGTGGCAATCATTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTCTGTCCCATGGAGGGACTGAATGTGACAGTGGCAATCATTTA  393

seq1  AACTGTCAGCGCAGCTGCCATTCTGCGGACAGTTTTACAGACCCACAGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCAGCGCAGCTGCCATTCTGCGGACAGTTTTACAGACCCACAGCT  443

seq1  CCCAGGCACCACTTATCGCCAGTCCCTCATTCTGTTTTCCTATATTATTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCACCACTTATCGCCAGTCCCTCATTCTGTTTTCCTATATTATTG  493

seq1  TTCTACCTTTTAATTCTTAAACTCTGCGGGTGTTGGTTGCTGGTTTTGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTTTTAATTCTTAAACTCTGCGGGTGTTGGTTGCTGGTTTTGTG  543

seq1  TGCTATTTTAAGGTGAATCTGAGACATTTTGAACATTTTACCTTGAAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTTAAGGTGAATCTGAGACATTTTGAACATTTTACCTTGAAAAA  593

seq1  CCTCAGTTTGCATCTTTAAAAAGAACATTTTCATAAGTGGACAAAAATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTGCATCTTTAAAAAGAACATTTTCATAAGTGGACAAAAATAT  643

seq1  TATTAGAATGCCTGAGAAAATTAATGATTTCTTTGTGTAATTGAATTCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAATGCCTGAGAAAATTAATGATTTCTTTGTGTAATTGAATTCCC  693

seq1  CATTCATACACAAATCTCCTCAATTATCTCCATAATGCCTTTTACAGCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATACACAAATCTCCTCAATTATCTCCATAATGCCTTTTACAGCTG  743

seq1  CTTTGTCAAAACTTGCATCTAAGCCAGGACAAGGGTTTTCTGGAGTCCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCAAAACTTGCATCTAAGCCAGGACAAGGGTTTTCTGGAGTCCCT  793

seq1  AAGTCTTTTAAAATATAAGTCAATCTCTTTTCTCCCACTCTCATTTGTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTTAAAATATAAGTCAATCTCTTTTCTCCCACTCTCATTTGTGG  843

seq1  AGGCAAGGGCAGTTATCATAAAGGAAACTTCCCTTTTTTGACTTGTCTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGGCAGTTATCATAAAGGAAACTTCCCTTTTTTGACTTGTCTGG  893

seq1  TTGTTTCTTCACAGTGCCTTTATAAAACGGTGCCTCCCCTTTCATTAATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTCACAGTGCCTTTATAAAACGGTGCCTCCCCTTTCATTAATT  943

seq1  CCAATCTGAGATGGCACCAGTTAACCAACAGCGAGCTCTCCATTCCTCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTGAGATGGCACCAGTTAACCAACAGCGAGCTCTCCATTCCTCTC  993

seq1  ATCACCAGATGTCTCTATGAACTGCTTATTCGAGGTTACTTTCTATAAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAGATGTCTCTATGAACTGCTTATTCGAGGTTACTTTCTATAAGC  1043

seq1  AGAATATCTTTTTTTGGTGCTTGGATTATTTCACTTAATGCTAAGAGTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATCTTTTTTTGGTGCTTGGATTATTTCACTTAATGCTAAGAGTTT  1093

seq1  AAGGATCAACCCTGTTCTAGACACACGGAATTC  1130
      |||||||||||||||||||||||||||||||||
seq2  AAGGATCAACCCTGTTCTAGACACACGGAATTC  1126


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