BAC Information

Click to search

BAC

Clone NameB6Ng01-185H08
Chromosome15 (Build37)13 (Build37)
Map Location 49,110,294 - 49,111,41129,329,612 - 29,330,149
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneLOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185H08.bB6Ng01-185H08.g
ACCGA010561GA010562
length1,1151,042
definitionB6Ng01-185H08.b B6Ng01-185H08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,110,294 - 49,111,411)(29,329,612 - 29,330,149)
sequence
gaattctcacagggttgagggaccgtcttagtccagtctgttggcacaat
tacgcgttttttgttaagaggttgacaacacattatagccagttttcaat
tatggaactttaaagtctatgctgggctggatactttttcagcatcacat
tttcagatagtggtcaaccatattcttaaaagtaattttgagtacttata
agtacgtagtgaatcagtgaatatttatcctcattatcactcttattttt
gtaattctctatcttacttttaatgcaaacagagaaataaaaattagaga
tttctcatagcaaaatttgagcctgctgtttcaccctgttgtgtaagttc
tcagctgtgcaacattgattcttgtgtacagtcgaccatctcactcgcat
gttcttgaatgacagaaatgttgtgaacacatactttagattcctcatct
gagtgaaattatatggtatttgctcctttgtttctcctcttagcatgata
ctctttgtggtaatacattttgtcaaatattccaaaattttcttctattt
tatagactgactagaaaaattcagataataattatgataatggaaacatt
tatttttgtttgctatttaacttttcattgattctttgtgaatttcacgt
tatatatcctaaccccactgctcctttccctgtccctttctcctgacttt
tgtgcttgcaacagcccccaccacatacataaaccaaccaacaaaacaaa
caaaaccaaaaatcaaaaacaaaacaaaaaactgaaaaaccaatcttttg
tggatgctgtagtatgtcatagtgtgtcccacagtgtacccttttgttca
cacgtttttacttgcaattattcaaatgaaagcaatgaatcattagcctg
ggtcaagtcctctggttctggtacacatcgatgctaattctgatcagata
ttctgttgtgggactgtgttatggagattctgaagcttccgtgtgtagga
ctagccccttcacttgtcataactggggtagacgtgagggggccaattca
atgccttggctctggggcctgaatcatagcctgattgttcaggctgccag
tttcctttgcctaca

gaattcctcttggaggattttacctttgatgagtatgaagtgcccctcct
tgtctttttttattatcttgggttggaattcgattttgttagatattaga
atggctactccagcttgtttcttcaggccatttgcttgtaaaattgtttt
ccagcctttcattctgaggtagtgtctatatttttctctgagatgagttt
cctgtaagcagcaaaatgttgggtcttgtttgtgtagccagtttgttagt
ctatgtctttttattggggagttgagtccattgatattaagagatattaa
ggaaaagtaattgttgcttcctgttatttttgttgttaaagttggcattc
tgttcttgtggctgtcttcttttagttttgttgagggattaccttcttgt
tttttctagggcgtggttcccgccttgtattgtttttttcctgttgttat
cctttgaagggctggattcatgagagataatgggtgaatttagttttgtc
gtggaatactttggtttctccatctatggtaattgaaagtttggctgggt
atagtagcctgggctggaatttgtgatctcttagtgtctgtataacatct
gtccaggctcttctggctttcatagtctctggtgaaaaatctggtttaat
tctgataggcttgcctttatatgttacttgacctttttcccttactgctt
ctagtattctatctttatttagtgcatttgttgttctgatttattatgtg
tcgggaggaatttcttttctggtccagtctattttgaagttctgtaggct
tctttgtatgttcatgggcattctctttctttagatttgggaaagttttc
ttcgataattttgttgaagatgtttgctggtcctttgagttgaaaatctt
ccttcttcatccactcctattacccgtaaggtttggtcttcttcattgtg
tctttggatttcctcggaatgttttgagttaaggatctttttgcattttt
ccattttctttggattggtggtgccgatgttctctgatggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_49110294_49111411
seq2: B6Ng01-185H08.b_42_1156

seq1  GAATTCTCACAGGGTTGAGGGACCGTCTTAGTCCAGTCTGTTGGCACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAGGGTTGAGGGACCGTCTTAGTCCAGTCTGTTGGCACAAT  50

seq1  TACGCGTTTTTTGTTAAGAGGTTGACAACACATTATAGCCAGTTTTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCGTTTTTTGTTAAGAGGTTGACAACACATTATAGCCAGTTTTCAAT  100

seq1  TATGGAACTTTAAAGTCTATGCTGGGCTGGATACTTTTTCAGCATCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAACTTTAAAGTCTATGCTGGGCTGGATACTTTTTCAGCATCACAT  150

seq1  TTTCAGATAGTGGTCAACCATATTCTTAAAAGTAATTTTGAGTACTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATAGTGGTCAACCATATTCTTAAAAGTAATTTTGAGTACTTATA  200

seq1  AGTACGTAGTGAATCAGTGAATATTTATCCTCATTATCACTCTTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGTAGTGAATCAGTGAATATTTATCCTCATTATCACTCTTATTTTT  250

seq1  GTAATTCTCTATCTTACTTTTAATGCAAACAGAGAAATAAAAATTAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCTCTATCTTACTTTTAATGCAAACAGAGAAATAAAAATTAGAGA  300

seq1  TTTCTCATAGCAAAATTTGAGCCTGCTGTTTCACCCTGTTGTGTAAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATAGCAAAATTTGAGCCTGCTGTTTCACCCTGTTGTGTAAGTTC  350

seq1  TCAGCTGTGCAACATTGATTCTTGTGTACAGTCGACCATCTCACTCGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTGCAACATTGATTCTTGTGTACAGTCGACCATCTCACTCGCAT  400

seq1  GTTCTTGAATGACAGAAATGTTGTGAACACATACTTTAGATTCCTCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGAATGACAGAAATGTTGTGAACACATACTTTAGATTCCTCATCT  450

seq1  GAGTGAAATTATATGGTATTTGCTCCTTTGTTTCTCCTCTTAGCATGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAATTATATGGTATTTGCTCCTTTGTTTCTCCTCTTAGCATGATA  500

seq1  CTCTTTGTGGTAATACATTTTGTCAAATATTCCAAAATTTTCTTCTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTGGTAATACATTTTGTCAAATATTCCAAAATTTTCTTCTATTT  550

seq1  TATAGACTGACTAGAAAAATTCAGATAATAATTATGATAATGGAAACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACTGACTAGAAAAATTCAGATAATAATTATGATAATGGAAACATT  600

seq1  TATTTTTGTTTGCTATTTAACTTTTCATTGATTCTTTGTGAATTTCACGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTTTGCTATTTAACTTTTCATTGATTCTTTGTGAATTTCACGT  650

seq1  TATATATCCTAACCCCACTGCTCCTTTCCCTGTCCCTTTCTCCTGACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCCTAACCCCACTGCTCCTTTCCCTGTCCCTTTCTCCTGACTTT  700

seq1  TGTGCTTGCAACAGCCCCCACCACATACATAAACCAACCAACAAAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGCAACAGCCCCCACCACATACATAAACCAACCAACAAAACAAA  750

seq1  CAAAACCAAAAATCAAAAACAAAACAAAAAACTGAAAAACCAATCTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAAAAATCAAAAACAAAACAAAAAACTGAAAAACCAATCTTTTG  800

seq1  TGGATGCTGTAGTATGTCATAGTGTGTCCCACAGTGTACCCTTTTGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTGTAGTATGTCATAGTGTGTCCCACAGTGTACCCTTTTGTTCA  850

seq1  CACGTTTTTACTTGCAATTATTCAAATGAAAGCAATGAATCATTAGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTTTACTTGCAATTATTCAAATGAAAGCAATGAATCATTAGCCTG  900

seq1  GTTCAAGTCCTCTGGTTTCTGGTACACATCGATGCTAATTCTGATCAGAT  950
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGTCAAGTCCTCTGG-TTCTGGTACACATCGATGCTAATTCTGATCAGAT  949

seq1  ATTCTGTTGTTGGACTGTGTTATGGAGATTCTGAAGCTTTCCGTGTGTAG  1000
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  ATTCTGTTGTGGGACTGTGTTATGGAGATTCTGAAGC-TTCCGTGTGTAG  998

seq1  GACTAGCCCCTTCACTTGTTCATAACTGGGGTAGACGTTGAGGGGGCCAA  1050
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  GACTAGCCCCTTCACTTG-TCATAACTGGGGTAGACG-TGAGGGGGCCAA  1046

seq1  TTCAATGCCCTGGCTCT-GGGCCTGGATCATAG-CTGAGTGGTCAGCCTG  1098
      ||||||||| ||||||| ||||||| ||||||| |||| || |||| |||
seq2  TTCAATGCCTTGGCTCTGGGGCCTGAATCATAGCCTGATTGTTCAGGCTG  1096

seq1  CCAGTTTTCCTTTGCCTACA  1118
      |||| |||||||||||||||
seq2  CCAG-TTTCCTTTGCCTACA  1115


seq1: chr13_29329612_29330149
seq2: B6Ng01-185H08.g_554_1107 (reverse)

seq1  TTCCAT-AGAGAACGTCGGCA-CAACAAT-CAAAGAAAATGG-AAAATGC  46
      |||||| ||||||| |||||| || |||| |||||||||||| |||||||
seq2  TTCCATCAGAGAACATCGGCACCACCAATCCAAAGAAAATGGAAAAATGC  50

seq1  AAAAAGATCC-TAACTCAAAACAT--CCAGGAAATCC-AGGACACAATG-  91
      |||||||||| |||||||||||||  | ||||||||| | ||||||||| 
seq2  AAAAAGATCCTTAACTCAAAACATTCCGAGGAAATCCAAAGACACAATGA  100

seq1  AGAAGACCAAACC-TACGCATAATAGGAGTGGATG-AGAATGAAGATTTT  139
      ||||||||||||| ||||  ||||||||||||||| |||| |||||||||
seq2  AGAAGACCAAACCTTACGGGTAATAGGAGTGGATGAAGAAGGAAGATTTT  150

seq1  CAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAAC-T  188
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  CAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATCGAAGAAAACTT  200

seq1  TCCCAAATCTAAAGAAAGAG-ATGCCCATGAACATAC-AAGAAGCCTACA  236
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  TCCCAAATCTAAAGAAAGAGAATGCCCATGAACATACAAAGAAGCCTACA  250

seq1  GAAC-TCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAAT  285
      |||| || ||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCAAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAAT  300

seq1  -AATCAGAACAACAAATGCACTAAATAAAGAGAGAATACTAAAAGCAGTA  334
       |||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  AAATCAGAACAACAAATGCACTAAATAAAGATAGAATACTAGAAGCAGTA  350

seq1  AGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACC  384
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTAAACC  400

seq1  AGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTA  450

seq1  TACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCC  484
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACAGACACTAAGAGATCACAAATTCCAGCCCAGGCTACTATACCCAGCC  500

seq1  AAACTCTCAATTACCATAGATAGAGAAACCAAAGTATTCCACGACAAAAC  534
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAACTTTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAAC  550

seq1  TAAA  538
      ||||
seq2  TAAA  554


| Home | SequenceCutter | Blast | Download |