BAC Information

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BAC

Clone NameB6Ng01-186L10
Chromosome1 (Build37)13 (Build37)
Map Location 57,160,320 - 57,161,373103,444,046 - 103,444,119
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
Downstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186L10.bB6Ng01-186L10.g
ACCGA011483GA011484
length1,056967
definitionB6Ng01-186L10.b B6Ng01-186L10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,160,320 - 57,161,373)(103,444,046 - 103,444,119)
sequence
gaattctttacccacatcagagcttgcacatcagagcttgcactacaaga
gagggatgcttaggtttttctgcaaagcctgactgcatcaaagtagggac
cagaactgcaaagtccactctccacatcacaaggagcagaatggcactcg
ggactttgaaagtccagcatgaagctagtgcctgctccttgtgtgagctc
catgacaactgggctgtggacagacagggggacagcagcagtacagacag
ggagggctggaaggacagcaccacccacagtcatgcctccacccttagca
gcaacatcagcctcggaaaaatctagatttctttacaccttttaaatcca
agttgtgacatggaaaaagtggctgccattgtctctatgagaaggcccct
ttaaggccaagtcagattacccaatgttttaatagactttgctttctaat
tttccatagcccgttaccgtctgcttctaaaatccctgactctgggccgt
gttactcagcctctctgaaagggagcagatagcagtattctcttgtctta
agtggggtttgcaaagacatgggctgaaactcgtacagggagaattcctg
gcaggtttctctcagaaataatcctgagagagaatgaagaagacaatatt
ggacagtgatggaggttaaaccagggtgacattccaacaaatcaactgct
atataaagggatttgttgatgggcgaagctcttttaattgtcatgtccta
gaacagtgagcaagctactggatatagaccacttctgaggaaggacatca
ctttttgaggaagcaactcccattagttggcagcagtgcctggggagggt
ctctgctgtgttggaagtcttccagtggcgtaaaagcagagagtagaggt
ttgggccctgaagaggggcattacctgggccatactgcacctccgtacat
gcctactaccaccagatacattgcctcccttctgttgacagccctttctg
gaaacagctcctttaagaattctagttgtgttttgaggagtcggagtgtg
gttgga

gaattccaggacagccaggactacacagagaaaccctgtctcaaaaacaa
acaaaaacaaaaacaaaagcaaacaaaaatcaatgttgtgcttaaagcac
tagctggagcaataaggcaagagaaggaatttaaaaggatataaataaga
gaagaagtcaaaccaagtctgtttgctgataacataataccatacattcg
gatctccaaatttctaccaaaaaccttttagaaatgaaaaaacaaagtca
gcagtgtgccaggacagagaatcaaattgcacaaagagatagcttttcta
taaagtgataacagacagaaaaatgtaatgaaaaacactgctattcacaa
aaacctcaaaggaggtaaaatacctaggagtaaatctaactaaggagttg
aaggacctttacaaagaaaattttaaactttttaagaaagagataaagac
actaaaaagtaggaagacatttcatgctcatgtattggtagaattaatgt
gaaaatgacttccaccagtatattttcagagttaatgcaatcccaatcaa
aatacttatatccttgtatcgttcttcatagaaataggaaaaatatccta
aaattaatatggaatcacaaaagaaagatccagacagtcaaaataatcct
gagcaaaaagtatatgattatgggattcctatttcagatctgaagatata
ttcagagccatagttagaaacatgatagggtactagcatagaagcagaca
catagacccatggaacaaaattgaagacccaaacataagtatatatttca
accatttaatatttgacaagatgccaaaaacataagctgtaagagacagc
atcttcagcaaacagtcctgggaaaactggatgtccatatagagaagagt
ggaaattacaccagtatctatcatcttcacaagaactaattccaagggga
tcaaagacctaaatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_57160320_57161373
seq2: B6Ng01-186L10.b_45_1100

seq1  GAATTCTTTACCCACATCAGAGCTTGCACATCAGAGCTTGCACTACAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCCACATCAGAGCTTGCACATCAGAGCTTGCACTACAAGA  50

seq1  GAGGGATGCTTAGGTTTTTCTGCAAAGCCTGACTGCATCAAAGTAGGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGCTTAGGTTTTTCTGCAAAGCCTGACTGCATCAAAGTAGGGAC  100

seq1  CAGAACTGCAAAGTCCACTCTCCACATCACAAGGAGCAGAATGGCACTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGCAAAGTCCACTCTCCACATCACAAGGAGCAGAATGGCACTCG  150

seq1  GGACTTTGAAAGTCCAGCATGAAGCTAGTGCCTGCTCCTTGTGTGAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGAAAGTCCAGCATGAAGCTAGTGCCTGCTCCTTGTGTGAGCTC  200

seq1  CATGACAACTGGGCTGTGGACAGACAGGGGGACAGCAGCAGTACAGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAACTGGGCTGTGGACAGACAGGGGGACAGCAGCAGTACAGACAG  250

seq1  GGAGGGCTGGAAGGACAGCACCACCCACAGTCATGCCTCCACCCTTAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCTGGAAGGACAGCACCACCCACAGTCATGCCTCCACCCTTAGCA  300

seq1  GCAACATCAGCCTCGGAAAAATCTAGATTTCTTTACACCTTTTAAATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCAGCCTCGGAAAAATCTAGATTTCTTTACACCTTTTAAATCCA  350

seq1  AGTTGTGACATGGAAAAAGTGGCTGCCATTGTCTCTATGAGAAGGCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGACATGGAAAAAGTGGCTGCCATTGTCTCTATGAGAAGGCCCCT  400

seq1  TTAAGGCCAAGTCAGATTACCCAATGTTTTAATAGACTTTGCTTTCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCCAAGTCAGATTACCCAATGTTTTAATAGACTTTGCTTTCTAAT  450

seq1  TTTCCATAGCCCGTTACCGTCTGCTTCTAAAATCCCTGACTCTGGGCCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAGCCCGTTACCGTCTGCTTCTAAAATCCCTGACTCTGGGCCGT  500

seq1  GTTACTCAGCCTCTCTGAAAGGGAGCAGATAGCAGTATTCTCTTGTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCAGCCTCTCTGAAAGGGAGCAGATAGCAGTATTCTCTTGTCTTA  550

seq1  AGTGGGGTTTGCAAAGACATGGGCTGAAACTCGTACAGGGAGAATTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGTTTGCAAAGACATGGGCTGAAACTCGTACAGGGAGAATTCCTG  600

seq1  GCAGGTTTCTCTCAGAAATAATCCTGAGAGAGAATGAAGAAGACAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTTCTCTCAGAAATAATCCTGAGAGAGAATGAAGAAGACAATATT  650

seq1  GGACAGTGATGGAGGTTAAACCAGGGTGACATTCCAACAAATCAACTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTGATGGAGGTTAAACCAGGGTGACATTCCAACAAATCAACTGCT  700

seq1  ATATAAAGGGATTTGTTGATGGGCGAAGCTCTTTTAATTGTCATGTCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGGGATTTGTTGATGGGCGAAGCTCTTTTAATTGTCATGTCCTA  750

seq1  GAACAGTGAGCAAGCTACTGGATATAGACCACTTCTGAGGAAGGACATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGAGCAAGCTACTGGATATAGACCACTTCTGAGGAAGGACATCA  800

seq1  CTTTTTGAGGAAGCAACTCCCATTAGTTGGCAGCAGTGCCTGGGGAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGAGGAAGCAACTCCCATTAGTTGGCAGCAGTGCCTGGGGAGGGT  850

seq1  CTCTGCTGTGTTGGAAGTC-TCCAGTGGCGTAAAAGCAGAGAGTAAGAGG  899
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  CTCTGCTGTGTTGGAAGTCTTCCAGTGGCGTAAAAGCAGAGAGT-AGAGG  899

seq1  TTT-GGCCCTGAAGAGGGGCATTACCT-GGCCATACTGCACCTCCGTACA  947
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGGGCCCTGAAGAGGGGCATTACCTGGGCCATACTGCACCTCCGTACA  949

seq1  TGCCCTACTACCACCAGATACATTGCCTCCC-TCTGTTTGAACAGCCC-T  995
      || |||||||||||||||||||||||||||| ||||||   ||||||| |
seq2  TG-CCTACTACCACCAGATACATTGCCTCCCTTCTGTT--GACAGCCCTT  996

seq1  TCTGGAAACAGCTCCTTTAAG-ATTCTAGTTTGTGTTTTGAGGAGTTGGA  1044
      ||||||||||||||||||||| ||||||| |||||||||||||||| |||
seq2  TCTGGAAACAGCTCCTTTAAGAATTCTAG-TTGTGTTTTGAGGAGTCGGA  1045

seq1  GTGT-GTTGGA  1054
      |||| ||||||
seq2  GTGTGGTTGGA  1056


seq1: chr13_103444046_103444119
seq2: B6Ng01-186L10.g_71_145

seq1  TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAA---AAACA  47
      |||||||||||||||| ||| |||||||||||||||||||||   |||||
seq2  TTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCAAAAACAAACA  50

seq1  AAAACAAAAACAAAAAAGCAAACAAAA  74
      |||||||||||  ||||||||||||||
seq2  AAAACAAAAAC--AAAAGCAAACAAAA  75


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