BAC Information

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BAC

Clone NameB6Ng01-187B17
Chromosome13 (Build37)
Map Location 106,885,900 - 106,887,034
singlet/doubletsinglet
Overlap genenone
Upstream gene4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a, EG668025
Downstream geneOlfr717-ps1, LOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187B17.bB6Ng01-187B17.g
ACCGA011771GA011772
length1,1831,126
definitionB6Ng01-187B17.b B6Ng01-187B17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactttacatcccaattgcagtccatttttctctactcacatcct
aatccttcccttgtaaatctttgccccctgccattctcctcagagaagaa
gaaatcccctttgggaaataccctactctgggacattagacccagaggaa
ctaagtgcatcctctcccactgaggcctgatcaggcagtccaggtagagg
aaagggatccaatggcaggcaacagagtctgagatagccctcactctaat
tgttaggggaaccatacgaagaccccaatgaacatctgctacaaatgtat
aggggacctacatacagcccttgcatgtgtttcattggtggtccagtctc
tgtgagcccccagtgggcccaggttagttgactttctaagtcttattgtg
gtgtccttgaccccctcaactcactcaattttaaccccccactctttcac
cagactctatgagctccacttggtgtggcaaagcaaactgtcattaatat
tgtccgaggttggctctcttacatgagataagtctcaagttgggacagtc
attggttggctgttctctccatttctgttccatctttatccctgtgaatc
ttgtaggtggtacaaatttggggttgaaggttttgtgggtgggttgtcat
ctcccttcctcaactggaattcctgcctgtctatacggggttgccacttc
agtctctatattcactgctggtagcaatctcagctagggtagcacccata
gaacccccccccccccatagcaccacccaaaagacactacccccagtgac
agacctccagttagccacttgagatgtcaccatcaattttccattcttat
tcccagctctctcttgtgaaatatccccttacattctgactcttccaccc
agttcccctctctaaaactcatcttctgatggattaatttgttttttttt
cttctgagtgaaatccacacacattccctcttttgggcctgtctaattac
ccaagtttcctttggggtctcgtggatttgcagcatgtaatcctgcaatt
ttaatgaactattaatctaatgaagttagtttctttcctgtgctgggaaa
gaaattctcaaatttatatccaattttctggcaaatctcatgaaatgttt
ttgatttaaaaagccgaaaatggtttcaaattg
gaattccataaagtatccagtactatggtttaaatatggaagtactgata
aaatgaacagactataaagaaagaagccataaccaaataaattctcaatg
atggtacaatttctcccatcaaggacatgcacagtaggaaaaaaaattag
atgctgttcttaaactctgcatcagaagtgagcccagaaattgatgtagt
tactttgcatgagaccatttcctgacaaagagatttctatgtgaatgcac
tgcttaacactcacagccttgcaacatgagcttggtatggaaacattcag
ttcaatatttacctcaaatactaccaatgaaacactaaaaccaccttgag
agtatctgaaacaaaggaagtcagtgagaaatcccatcttgtcacccatc
caattcatctttctctcttgctagagatgattccacactaataacttttt
tcatggcttggttagtcttcctaagacttctgattcttaacattcttgag
ggaaatatagtaagtacccttgctcttcaagggcaacgtgtggcataaag
caaaccaaaatactataatacagggaatgaactagaaaatgtaaagataa
ataaaacgtattcagtatgcggtcagtatgcggtcaaggatggtgaagtg
actactgagctgctagtctcagttcacagagactgtgattctgatttgac
ccaagcagttggggtcagattttgaacttaatatggtttaaatgtgtcaa
cacaacactgatatagctattgataaatcatcaaagcaatcatttgatag
cactgtcaaggagaagttgtttacctacatattttgtttcatatttaaag
tgttaaaaattattttaactgacatatgatactcattccattaaattatc
tttaaaagtgatacctctatttttttccagttaaaaattttattggatat
tttatttatttacatttcaatgtatccctttttctaatttcccctctgaa
aaccaccatcccgtcctccctacccctgcttctatgcgtgctcactaccg
ctcacccactcctactccactccctggcatcccctacacaggaagcatgg
agcctccaagactaagtcctctcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_106885900_106887034
seq2: B6Ng01-187B17.g_61_1186

seq1  GAATTCCATAAAGTATCCAGTACTATGGTTTAAATATGGAAGTACTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAGTATCCAGTACTATGGTTTAAATATGGAAGTACTGATA  50

seq1  AAATGAACAGACTATAAAGAAAGAAGCCATAACCAAATAAATTCTCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACAGACTATAAAGAAAGAAGCCATAACCAAATAAATTCTCAATG  100

seq1  ATGGTACAATTTCTCCCATCAAGGACATGCACAGTAGGAAAAAAAATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACAATTTCTCCCATCAAGGACATGCACAGTAGGAAAAAAAATTAG  150

seq1  ATGCTGTTCTTAAACTCTGCATCAGAAGTGAGCCCAGAAATTGATGTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTCTTAAACTCTGCATCAGAAGTGAGCCCAGAAATTGATGTAGT  200

seq1  TACTTTGCATGAGACCATTTCCTGACAAAGAGATTTCTATGTGAATGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGCATGAGACCATTTCCTGACAAAGAGATTTCTATGTGAATGCAC  250

seq1  TGCTTAACACTCACAGCCTTGCAACATGAGCTTGGTATGGAAACATTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAACACTCACAGCCTTGCAACATGAGCTTGGTATGGAAACATTCAG  300

seq1  TTCAATATTTACCTCAAATACTACCAATGAAACACTAAAACCACCTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATTTACCTCAAATACTACCAATGAAACACTAAAACCACCTTGAG  350

seq1  AGTATCTGAAACAAAGGAAGTCAGTGAGAAATCCCATCTTGTCACCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGAAACAAAGGAAGTCAGTGAGAAATCCCATCTTGTCACCCATC  400

seq1  CAATTCATCTTTCTCTCTTGCTAGAGATGATTCCACACTAATAACTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCATCTTTCTCTCTTGCTAGAGATGATTCCACACTAATAACTTTTT  450

seq1  TCATGGCTTGGTTAGTCTTCCTAAGACTTCTGATTCTTAACATTCTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTTGGTTAGTCTTCCTAAGACTTCTGATTCTTAACATTCTTGAG  500

seq1  GGAAATATAGTAAGTACCCTTGCTCTTCAAGGGCAACGTGTGGCATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATAGTAAGTACCCTTGCTCTTCAAGGGCAACGTGTGGCATAAAG  550

seq1  CAAACCAAAATACTATAATACAGGGAATGAACTAGAAAATGTAAAGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAAATACTATAATACAGGGAATGAACTAGAAAATGTAAAGATAA  600

seq1  ATAAAACGTATTCAGTATGCGGTCAGTATGCGGTCAAGGATGGTGAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACGTATTCAGTATGCGGTCAGTATGCGGTCAAGGATGGTGAAGTG  650

seq1  ACTACTGAGCTGCTAGTCTCAGTTCACAGAGACTGTGATTCTGATTTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGAGCTGCTAGTCTCAGTTCACAGAGACTGTGATTCTGATTTGAC  700

seq1  CCAAGCAGTTGGGGTCAGATTTTGAACTTAATATGGTTTAAATGTGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGTTGGGGTCAGATTTTGAACTTAATATGGTTTAAATGTGTCAA  750

seq1  CACAACACTGATATAGCTATTGATAAATCATCAAAGCAATCATTTGATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACTGATATAGCTATTGATAAATCATCAAAGCAATCATTTGATAG  800

seq1  CACTGTCAAGGAGAAGTTGTTTACCTACATATTTTGTTTCATATTTAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCAAGGAGAAGTTGTTTACCTACATATTTTGTTTCATATTTAAAG  850

seq1  TGTTAAAAATTATTTTAACTGACATATGATACTCATTCCATTAAATTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAAATTATTTTAACTGACATATGATACTCATTCCATTAAATTATC  900

seq1  TTTAAAAGTGATACCTCTATTTTTTTCCAGTTAAAAATTTTATTGGATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTGATACCTCTATTTTTTTCCAGTTAAAAATTTTATTGGATAT  950

seq1  TTTATTTATTTACATTTCAAATGTTATCCCTTTTTCTAATTTCCCCTCTG  1000
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  TTTATTTATTTACATTTC-AATG-TATCCCTTTTTCTAATTTCCCCTCTG  998

seq1  AAAACCACCATCCCGTCCTCCCTACCCCTGCTTCTATGAAGGTGCTCACC  1050
      ||||||||||||||||||||||||||||||||||||||   ||||||| |
seq2  AAAACCACCATCCCGTCCTCCCTACCCCTGCTTCTATG--CGTGCTCA-C  1045

seq1  TACCCGCTCACCCACTCCTACCTCCACTCCCTGGCATTCCCCTACACAGG  1100
      || ||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TA-CCGCTCACCCACTCCTA-CTCCACTCCCTGGCA-TCCCCTACACAGG  1092

seq1  -AGCATGGAGCCTTCCAGGACTAAGGTCCTCTCATA  1135
       ||||||||||| |||| |||||| |||||||||||
seq2  AAGCATGGAGCC-TCCAAGACTAA-GTCCTCTCATA  1126