BAC Information

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BAC

Clone NameB6Ng01-187K01
Chromosome13 (Build37)
Map Location 5,185,032 - 5,317,794
singlet/doubletdoublet
Overlap genenone
Upstream geneAkr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187K01.bB6Ng01-187K01.g
ACCGA012157GA012158
length1,151857
definitionB6Ng01-187K01.b B6Ng01-187K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,185,032 - 5,186,189)(5,316,944 - 5,317,794)
sequence
gaattcctactgaattcccagttgtttcaagtgttttctgtgacattgga
acacactggcaaaggcttagctatgtcagaattcaatcttaaaaggcact
tataatgaggtaatactaaaagagagcacatggatccgtacactagacta
atgcagggatagggtatgagtatatgggttatgagaacaccaaagttcca
ggaggtgtatttccgtgaaactctttgcctcgtgagtgctcccaggcctc
tcagcctgccaagcaaacttcactgtagtgtgtgtagcacatgctgacaa
actctttgcttagaaaaacagatgttttctgtgcatatttatacagaaag
ataagtagacaatttgtacctgagaagcatcatttatattttctcttcct
gttcatttacagataaatgtacacaaggttgcacacataggttgctggtg
tccttttgtaaattagaagtaggcccatgataccaggcaactatgattta
tcacttgctcaacacactatcatattagtactaattgtacactttatcca
atctacctacctctcaaaaaaaatcaacattcaacaatggtctaattttc
catttcacagagaattaaaacaataaaatatgtcctctagtgaatgaact
tgttctcagttgtctaactcctccttcatcattgtcttccacaacttcct
gtcttccacacaaaggatgtctgtgtacattacaggtctgtgtcacagct
cttcccatgacctttttttttttctagcatcacctttattactttcactc
attctcttgacatgatgaacatccacaaagaatcagttcttgtttcagca
tgatgactcacttcctgcaacaagaagttgaggcaaagaagttacaagtt
tgaattctattcctggcaacttagtatgactttgacttaaaataaatatt
ctatatagaaagcttagtaccacagttattatgcttaaagccctggacat
aaccccttcataccataaaccaaatggagagatagagatgaaaacgatcc
tatttattagttccagatgagagactatcaaatccaaagccattggccta
ctaagaaccttatctacactgactgccctattttggagaaatctcccttc
a

gaattccttctaggcttttcctctgtttcttcatggaacttctgttgtgg
gctgggtgaagctcgcatgcactgaacctaggagaagctttcaggggttt
cctgtgagggaagacttttatttcttggtatatgtagtcatatacactgg
ggctacagcagctctgggcaaaatccctctactgctatactcatagacca
gagaaacttccaaaagacattgtattgaattatcaaagaagaaaaataag
caggtcttcccttgacataactgttgcttggtctttctgttacattttat
gagatttggtgtttttaagaaaatggagaaatcttttgtaagcaagagag
gggtgtgtgagttggagtgcttgccaacatcacctcctagtctccattaa
gtactccgaatgttgggggcattccaaggggcccatctcctttatacaaa
ctttgtttatcatagggcttcctctgtgaaagaattatgttttgttctct
gtgctattcgaataaaaagtgctggcttcaccattcagctgtttcacaca
atttaataaaaacaacatcaacaattcaaacaaacaataaaatgaaatgg
gaaaatctttgaagatctgagaataagagtttaacaaaagtgttaggtcc
tttgaaaattagattattagccttcaataaagtgttatcatctatgcaga
aaataaatatggccaccctagtaaaatatagtttggagagatgttgttta
cagtcaaccagcacacagtttgtattttcagataattatatgtacagttg
gaaatcattttttgttggattgtattaaaaaccaaaaggaaaaggcctgg
tagattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5185032_5186189
seq2: B6Ng01-187K01.b_44_1194

seq1  GAATTCCTACTGAATTCCCAGTTGTTTCAAGTGTTTTCTGTGACATTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTGAATTCCCAGTTGTTTCAAGTGTTTTCTGTGACATTGGA  50

seq1  ACACACTGGCAAAGGCTTAGCTATGTCAGAATTCAATCTTAAAAGGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGGCAAAGGCTTAGCTATGTCAGAATTCAATCTTAAAAGGCACT  100

seq1  TATAATGAGGTAATACTAAAAGAGAGCACATGGATCCGTACACTAGACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAGGTAATACTAAAAGAGAGCACATGGATCCGTACACTAGACTA  150

seq1  ATGCAGGGATAGGGTATGAGTATATGGGTTATGAGAACACCAAAGTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGGATAGGGTATGAGTATATGGGTTATGAGAACACCAAAGTTCCA  200

seq1  GGAGGTGTATTTCCGTGAAACTCTTTGCCTCGTGAGTGCTCCCAGGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTATTTCCGTGAAACTCTTTGCCTCGTGAGTGCTCCCAGGCCTC  250

seq1  TCAGCCTGCCAAGCAAACTTCACTGTAGTGTGTGTAGCACATGCTGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGCCAAGCAAACTTCACTGTAGTGTGTGTAGCACATGCTGACAA  300

seq1  ACTCTTTGCTTAGAAAAACAGATGTTTTCTGTGCATATTTATACAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGCTTAGAAAAACAGATGTTTTCTGTGCATATTTATACAGAAAG  350

seq1  ATAAGTAGACAATTTGTACCTGAGAAGCATCATTTATATTTTCTCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGACAATTTGTACCTGAGAAGCATCATTTATATTTTCTCTTCCT  400

seq1  GTTCATTTACAGATAAATGTACACAAGGTTGCACACATAGGTTGCTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTACAGATAAATGTACACAAGGTTGCACACATAGGTTGCTGGTG  450

seq1  TCCTTTTGTAAATTAGAAGTAGGCCCATGATACCAGGCAACTATGATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGTAAATTAGAAGTAGGCCCATGATACCAGGCAACTATGATTTA  500

seq1  TCACTTGCTCAACACACTATCATATTAGTACTAATTGTACACTTTATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGCTCAACACACTATCATATTAGTACTAATTGTACACTTTATCCA  550

seq1  ATCTACCTACCTCTCAAAAAAAATCAACATTCAACAATGGTCTAATTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTACCTCTCAAAAAAAATCAACATTCAACAATGGTCTAATTTTC  600

seq1  CATTTCACAGAGAATTAAAACAATAAAATATGTCCTCTAGTGAATGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACAGAGAATTAAAACAATAAAATATGTCCTCTAGTGAATGAACT  650

seq1  TGTTCTCAGTTGTCTAACTCCTCCTTCATCATTGTCTTCCACAACTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAGTTGTCTAACTCCTCCTTCATCATTGTCTTCCACAACTTCCT  700

seq1  GTCTTCCACACAAAGGATGTCTGTGTACATTACAGGTCTGTGTCACAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCACACAAAGGATGTCTGTGTACATTACAGGTCTGTGTCACAGCT  750

seq1  CTTCCCATGACC-TTTTTTTTTTCTAGCATCACCTTTATTACTTTCACTC  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATGACCTTTTTTTTTTTCTAGCATCACCTTTATTACTTTCACTC  800

seq1  ATTCTCTTGACATGATGAACATCCACAAAGAATCAGTTCTTG-TTCAGCA  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTCTCTTGACATGATGAACATCCACAAAGAATCAGTTCTTGTTTCAGCA  850

seq1  TGATGACTCACTTCCTGCAACAAGAAGTTGAGGCAAAGAAGTTACAAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTCACTTCCTGCAACAAGAAGTTGAGGCAAAGAAGTTACAAGTT  900

seq1  TGAATTCTATCCTGGGCAACTTAGTATGACTTTGACTTAAAATAAATATT  948
      |||||||||| |  ||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTATTCCTGGCAACTTAGTATGACTTTGACTTAAAATAAATATT  950

seq1  CTATATTAGAAAGCTTAGTA-CACAGTTATTATGCTTAAAGCCTTGGACA  997
      ||||| |||||||||||||| |||||||||||||||||||||| ||||||
seq2  CTATA-TAGAAAGCTTAGTACCACAGTTATTATGCTTAAAGCCCTGGACA  999

seq1  TAAACCCCTCATACCATAAAACAAAAGGAGAGATAGAAGAAAGAAAAAGA  1047
      ||| ||| |||||||||||| |||| |||||||||||   | ||||| | 
seq2  TAACCCCTTCATACCATAAACCAAATGGAGAGATAGA--GATGAAAACG-  1046

seq1  ATCATATTTAATTAGTTTCCTAGATGAGAGACTATCAAATCCAAGGCCAT  1097
      ||| ||||| |||||||  | ||||||||||||||||||||||| |||||
seq2  ATCCTATTT-ATTAGTT--CCAGATGAGAGACTATCAAATCCAAAGCCAT  1093

seq1  TTGCATACTAAGGAACTATTCTACCACTGACTGCCCCTATTTTGAAGGAA  1147
      | || ||||||| | ||  |||| ||||||||| |||||||||| | |||
seq2  TGGCCTACTAAGAACCTTATCTA-CACTGACTG-CCCTATTTTGGA-GAA  1140

seq1  ATCTCCCTTCA  1158
      |||||||||||
seq2  ATCTCCCTTCA  1151


seq1: chr13_5316944_5317794
seq2: B6Ng01-187K01.g_67_923 (reverse)

seq1  GAATCT-CCAGGCCTTTTCCTTTTTGTTTTTAATAACAACCAACAAAAA-  48
      |||||| ||||||||||||||||| ||||||||||  | |||||||||| 
seq2  GAATCTACCAGGCCTTTTCCTTTTGGTTTTTAATACAATCCAACAAAAAA  50

seq1  -TAATTCCAACTGTACATATAATAATCTG-AAATACAAACTGTGTGCTGG  96
        | ||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  TGATTTCCAACTGTACATATAATTATCTGAAAATACAAACTGTGTGCTGG  100

seq1  TTG-CTGT-AACAACATCTCTCCAAACTATATTTTACTAGGGTGGCCATA  144
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGTAAACAACATCTCTCCAAACTATATTTTACTAGGGTGGCCATA  150

seq1  TTTATTTTCTGCATAGATGATAACACTTTATTGAAGGCTAATAATCTAAT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCTGCATAGATGATAACACTTTATTGAAGGCTAATAATCTAAT  200

seq1  TTTCAAAGGACCTAACACTTTTGTTAAACTCTTATTCTCAGATCTTCAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGGACCTAACACTTTTGTTAAACTCTTATTCTCAGATCTTCAAA  250

seq1  GATTTTCCCATTTCATTTTATTGTTTGTTTGAATTGTTGATGTTGTTTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCCCATTTCATTTTATTGTTTGTTTGAATTGTTGATGTTGTTTTT  300

seq1  ATTAAATTGTGTGAAACAGCTGAATGGTGAAGCCAGCACTTTTTATTCGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTGTGTGAAACAGCTGAATGGTGAAGCCAGCACTTTTTATTCGA  350

seq1  ATAGCACAGAGAACAAAACATAATTCTTTCACAGAGGAAGCCCTATGATA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACAGAGAACAAAACATAATTCTTTCACAGAGGAAGCCCTATGATA  400

seq1  AACAAAGTTTGTATAAAGGAGATGGGCCCCTTGGAATGCCCCCAACATTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTTTGTATAAAGGAGATGGGCCCCTTGGAATGCCCCCAACATTC  450

seq1  GGAGTACTTAATGGAGACTAGGAGGTGATGTTGGCAAGCACTCCAACTCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACTTAATGGAGACTAGGAGGTGATGTTGGCAAGCACTCCAACTCA  500

seq1  CACACCCCTCTCTTGCTTACAAAAGATTTCTCCATTTTCTTAAAAACACC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCTCTCTTGCTTACAAAAGATTTCTCCATTTTCTTAAAAACACC  550

seq1  AAATCTCATAAAATGTAACAGAAAGACCAAGCAACAGTTATGTCAAGGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCATAAAATGTAACAGAAAGACCAAGCAACAGTTATGTCAAGGGA  600

seq1  AGACCTGCTTATTTTTCTTCTTTGATAATTCAATACAATGTCTTTTGGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGCTTATTTTTCTTCTTTGATAATTCAATACAATGTCTTTTGGAA  650

seq1  GTTTCTCTGGTCTATGAGTATAGCAGTAGAGGGATTTTGCCCAGAGCTGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGGTCTATGAGTATAGCAGTAGAGGGATTTTGCCCAGAGCTGC  700

seq1  TGTAGCCCCAGTGTATATGACTACATATACCAAGAAATAAAAGTCTTCCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCCAGTGTATATGACTACATATACCAAGAAATAAAAGTCTTCCC  750

seq1  TCACAGGAAACCCCTGAAAGCTTCTCCTAGGTTCAGTGCATGCGAGCTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGAAACCCCTGAAAGCTTCTCCTAGGTTCAGTGCATGCGAGCTTC  800

seq1  ACCCAGCCCACAACAGAAGTTCCATGAAGAAACAGAGGAAAAGCCTAGAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCCACAACAGAAGTTCCATGAAGAAACAGAGGAAAAGCCTAGAA  850

seq1  GGAATTC  851
      |||||||
seq2  GGAATTC  857


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