BAC Information

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BAC

Clone NameB6Ng01-188C03
Chromosome13 (Build37)
Map Location 37,208,793 - 37,209,861
singlet/doubletsinglet
Overlap genenone
Upstream geneLyrm4, Fars2, LOC100041590, LOC666758, Nrn1, F13a1
Downstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188C03.bB6Ng01-188C03.g
ACCGA012519GA012520
length1,2291,093
definitionB6Ng01-188C03.b B6Ng01-188C03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcattgaagaattgagttggaatttt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatattgatcctgccaatccatgagcatgggagatctttccatct
tcttgagatcttctttattttctttcttcagagacttgaagtttttatca
tacagatctttcacttccttagttagagtcacggccgagatatttatatt
atttgtgactattgagaagggtgtgttccctaatttctttctcagcctgt
ttatctttgtgtagaagaaaggcccattgacttggtttgagttaattaat
atcccagctacttccaccgaagctgtttatcaaggttaagagttcccttc
ggtgggactttaaggtcacttaattaatacccaatcattatcattccgcc
caaaggggaactttggaacttctctccaatggatccttgaactcccttag
tggtcgattgacttcgtggctcatactac
gaattctaattcaactctctgcatacataatttaagccacacgtgaaggt
tgatgctgaaatcctaattcccactacccccaaatgtgaccttatttaaa
gaaatgacctttaaagagaggcactaagatgaagctctaattcagcctga
tttgtctcagagagttgtgagggatacatatgctaagagaaaagatcaca
tggccacagagggagcttgtccacctgaaagcaaatgggattggacacag
gagtagccaaccatgttcttgccttcatcttggccttcaatttccagaac
catgaagaatacatgtatatcaagtcttgtagttggtggcacttgtatgg
cagcccaagctcaggaatcaaatgtcatggagcagaaaaggaatttgcta
aaaagtgtcatataccagaaggaatttcatttttctggtatgtcaagaat
gccagaaacacatattgatgtttctttaaggcttttgaggaagctagagt
caaatttctacattatgtgtttttctttggttttaggaaggattaatcaa
ccataataataacaacaaacaaaacttggtatgtagtatgatggtttgta
tatggaggcttgttctgagaagtgtgtcactagacattttcatcattgta
caaacatcacagtaaatgtatacaaacattggcagatgggttaagcattc
cttgtgctctctctctctctttcatgtctgtctatgtatgtgtgtttgta
tgtgatgcttttgcatgtgtgtgaacatatttaccaatatacattaagca
tgagtacacatgtaggtcagggtaggaagttcagatgtcctcctctattc
accttctaacctttatttctcagggcctgaaactcataacaaaccttccc
tgtttcattcttttcaaatgcagagaattccaggagtgaagccatcacac
ataaatctccaagttgacctctttcattctaatcaagaaccatcataagt
gtgaagatggatattgcatgttatgccaccttttagcaaattactggcta
tgatgctatcacatggactaggaaattttcaacctccattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_37208793_37209861
seq2: B6Ng01-188C03.g_65_1157

seq1  GAATTCTAATTCAACTCTCTGCATACATAATTTAAGCCACACGTGAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTCAACTCTCTGCATACATAATTTAAGCCACACGTGAAGGT  50

seq1  TGATGCTGAAATCCTAATTCCCACTACCCCCAAATGTGACCTTATTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGAAATCCTAATTCCCACTACCCCCAAATGTGACCTTATTTAAA  100

seq1  GAAATGACCTTTAAAGAGAGGCACTAAGATGAAGCTCTAATTCAGCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACCTTTAAAGAGAGGCACTAAGATGAAGCTCTAATTCAGCCTGA  150

seq1  TTTGTCTCAGAGAGTTGTGAGGGATACATATGCTAAGAGAAAAGATCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCAGAGAGTTGTGAGGGATACATATGCTAAGAGAAAAGATCACA  200

seq1  TGGCCACAGAGGGAGCTTGTCCACCTGAAAGCAAATGGGATTGGACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACAGAGGGAGCTTGTCCACCTGAAAGCAAATGGGATTGGACACAG  250

seq1  GAGTAGCCAACCATGTTCTTGCCTTCATCTTGGCCTTCAATTTCCAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCCAACCATGTTCTTGCCTTCATCTTGGCCTTCAATTTCCAGAAC  300

seq1  CATGAAGAATACATGTATATCAAGTCTTGTAGTTGGTGGCACTTGTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGAATACATGTATATCAAGTCTTGTAGTTGGTGGCACTTGTATGG  350

seq1  CAGCCCAAGCTCAGGAATCAAATGTCATGGAGCAGAAAAGGAATTTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAAGCTCAGGAATCAAATGTCATGGAGCAGAAAAGGAATTTGCTA  400

seq1  AAAAGTGTCATATACCAGAAGGAATTTCATTTTTCTGGTATGTCAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTCATATACCAGAAGGAATTTCATTTTTCTGGTATGTCAAGAAT  450

seq1  GCCAGAAACACATATTGATGTTTCTTTAAGGCTTTTGAGGAAGCTAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAACACATATTGATGTTTCTTTAAGGCTTTTGAGGAAGCTAGAGT  500

seq1  CAAATTTCTACATTATGTGTTTTTCTTTGGTTTTAGGAAGGATTAATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCTACATTATGTGTTTTTCTTTGGTTTTAGGAAGGATTAATCAA  550

seq1  CCATAATAATAACAACAAACAAAACTTGGTATGTAGTATGATGGTTTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATAATAACAACAAACAAAACTTGGTATGTAGTATGATGGTTTGTA  600

seq1  TATGGAGGCTTGTTCTGAGAAGTGTGTCACTAGACATTTTCATCATTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGGCTTGTTCTGAGAAGTGTGTCACTAGACATTTTCATCATTGTA  650

seq1  CAAACATCACAGTAAATGTATACAAACATTGGCAGATGGGTTAAGCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCACAGTAAATGTATACAAACATTGGCAGATGGGTTAAGCATTC  700

seq1  CTTGTGCTCTCTCTCTCTCTTTCATGTCTGTCTATGTATGTGTGTTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTCTCTCTCTCTCTTTCATGTCTGTCTATGTATGTGTGTTTGTA  750

seq1  TGTGATGC-TTTGCATGTGTGTGAACATA-TTACCAATATACA-TAAGCA  797
      |||||||| |||||||||||||||||||| ||||||||||||| ||||||
seq2  TGTGATGCTTTTGCATGTGTGTGAACATATTTACCAATATACATTAAGCA  800

seq1  TGAGTACACATGTAGGTCAGGGTAGGAAG-TCAGATGTCCTCCTCTA-TC  845
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  TGAGTACACATGTAGGTCAGGGTAGGAAGTTCAGATGTCCTCCTCTATTC  850

seq1  ACCTTCT-ACCTT--ATTCCCA-GGCCTGAAACTCATAACAAACCT--CC  889
      ||||||| |||||   ||| || |||||||||||||||||||||||  ||
seq2  ACCTTCTAACCTTTATTTCTCAGGGCCTGAAACTCATAACAAACCTTCCC  900

seq1  TGTTTCAGTC-TTTCAAATGCAGAG-ATTCCAGGAGTG-AGCCATCACAC  936
      ||||||| || |||||||||||||| |||||||||||| |||||||||||
seq2  TGTTTCATTCTTTTCAAATGCAGAGAATTCCAGGAGTGAAGCCATCACAC  950

seq1  AT-AATCTCCAAG-TGACCT-TTTCA-TCTAATCAAGAACCAGCATAAGT  982
      || |||||||||| |||||| ||||| ||||||||||||||| |||||||
seq2  ATAAATCTCCAAGTTGACCTCTTTCATTCTAATCAAGAACCATCATAAGT  1000

seq1  GTG-AGATGGATATTGCATGTTATGCCACTTTATAGCAAATTACT-GCTA  1030
      ||| ||||||||||||||||||||||||| || |||||||||||| ||||
seq2  GTGAAGATGGATATTGCATGTTATGCCACCTTTTAGCAAATTACTGGCTA  1050

seq1  TGATGCTATCACATG--ATAAG-AATTTTCAA-CTCCATTATT  1069
      |||||||||||||||   || | ||||||||| ||||||||||
seq2  TGATGCTATCACATGGACTAGGAAATTTTCAACCTCCATTATT  1093