BAC Information

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BAC

Clone NameB6Ng01-188I07
Chromosome13 (Build37)
Map Location 99,196,542 - 99,366,835
singlet/doubletdoublet
Overlap geneLOC100039665, LOC100039854
Upstream geneLOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740, Rgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827
Downstream geneLOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188I07.bB6Ng01-188I07.g
ACCGA012798GA012799
length9391,214
definitionB6Ng01-188I07.b B6Ng01-188I07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,366,424 - 99,366,835)(99,196,542 - 99,197,693)
sequence
gaattcttagggtcctagagccctctcaagaggaacccagacacacacat
tgctgtgctcgctctatagtgcgtatatgttggggtgaaggaacagaggc
gtgcagtgttcacctcagatcctaccccgaaaaatgctgtaagtttgagc
ttctgctgtcatcagcaagcaagagaactgacaagtgcatctcatgcaac
tttgttgagtattgtcagaactggaaaacacacacacacacacacacaca
cacacacacacacatacacacacatacacacacacatacacacacataca
cacacatatacacacacacacatacacacacacacacacacacacacaca
catacacacacatacacacacacacacacacacacacacacacgcctgtg
tgcaccccccccccccccagtctacatcgaatgtctccttcagttgctct
ccaccttattttctgagatagaatctctcattgaaattgaatctcttttt
gattccactagactggctggggaacaagccctagaaatcttcccatctcc
agtgtcctcagtgcagggaaaacagacccatactaccacatctagctttt
atttgtgcactggagaccaaacagaggtcttcatgcctgtacagtaagca
ctcaggtttggacaacaagcactttgccgtctgagtcatcttcccagtcc
ctcactttttgtcatcgttaggatttccattgttgtgaagaccatgacgc
aaacttggaaaggaaggatttatttagcttatacgactacatttcagtcc
atcagctaaggaagttaaaagaggaactcagtcacagagggggcgtctgg
gacacaggagctgatgaagagccatggaatagatgctgcttactgtcttg
ctcctcacagcttgctcagcctgcttttcttacagaacc
acctttagggcctctcgcggctgcctgtgccgctcgacattctggtgatc
tttaactgggtccgaggacttctagattggaatgaatgtgtaccataata
ctgtaaagctgttgcgctattgtgctctcatttccagtgagttttttaca
gttccaggccccatgatccagggggttgggatggaaaatcccatgtcttc
gtaaaaacgtttttgaggttcgatgtattcgagagttgctgaaattttat
gatgctgtgtaggataagcccccacccctttcctctgctgggcaattaat
tccatatgtggggggaagaatactgtgcctgaaatgtctccattctgggg
catttttgtattgtttctttgaggtgggattatatattcgtgtgttccgc
ctagaatggatcaatcactgtatctcttgtattgatcttcaagcttttat
ttttcgctttctatttttatttgttgtttccttaaatatttctaaatttc
acttttcctctctcactgaactcatttccagtttatacttttaatttctg
aagtttctttcttttctttataaagcttctttgggggagaggatgttcct
ttcttgatttgtgaaaaatatacctttcttcatctccccaaagatttgac
tattttgtgttgtatttaattttgtttccccaagattcatattttttcca
tatggacttttttcttttgttaatgttttttttttccttaaaatatctgc
tggttctacattttctcatattaaagtaaaatatgtactgtttccagttc
actcactacctgtcaatcgtgaaaagaaaggaatgacctaaggctcccgt
tatgacatcgtatccagatgaaattgagagcaatcattgcctatatttat
taagcacatattctttggatttaatgccgatgactgtaatacaggctaca
gcagacgaaaactgaagcttacagtgttacataacttatccaggaccata
gagccatatccaggctatctatatatccaggaccttatagccagcgtgga
ggggaatgtgagctaatgacttataagctgtactgcctcctagtagatga
accttggtactttaggattgccattacctgatcattctgtccatccactc
tagatctcgatcgaaggaatatttagaggctcattcgtaccaggtaggaa
ctgatatggggcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_99366424_99366835
seq2: B6Ng01-188I07.b_48_587 (reverse)

seq1  AGATTTCTAGGGCTTGTTCCCCAGCCAGTCTAGTGGAATCAAAAAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTAGGGCTTGTTCCCCAGCCAGTCTAGTGGAATCAAAAAGAGAT  50

seq1  TCAATTTCAATGAGAGATTCTATCTCAGAAAATAAGGTGGAGAGCAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCAATGAGAGATTCTATCTCAGAAAATAAGGTGGAGAGCAACTG  100

seq1  AAGGAGACATTCGATGTAGACTGGGGGGGGGGGGGGTGCACACAGGCG--  148
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AAGGAGACATTCGATGTAGACTGGGGGGGGGGGGGGTGCACACAGGCGTG  150

seq1  --------------------------------------------------  148
                                                        
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTGTGTGTGTG  200

seq1  --------------------------------------------------  148
                                                        
seq2  TGTGTGTGTGTGTGTGTATGTGTGTGTGTGTATATGTGTGTGTATGTGTG  250

seq1  --------------------------TGTGTGTGTGTGTGTGTGTGTGTG  172
                                ||||||||||||||||||||||||
seq2  TGTATGTGTGTGTGTATGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTG  300

seq1  TGTGTGTGTGTGTTTTCCAGTTCTGACAATACTCAACAAAGTTGCATGAG  222
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTTTTCCAGTTCTGACAATACTCAACAAAGTTGCATGAG  350

seq1  ATGCACTTGTCAGTTCTCTTGCTTGCTGATGACAGCAGAAGCTCAAACTT  272
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTGTCAGTTCTCTTGCTTGCTGATGACAGCAGAAGCTCAAACTT  400

seq1  ACAGCATTTTTCGGGGTAGGATCTGAGGTGAACACTGCACGCCTCTGTTC  322
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATTTTTCGGGGTAGGATCTGAGGTGAACACTGCACGCCTCTGTTC  450

seq1  CTTCACCCCAACATATACGCACTATAGAGCGAGCACAGCAATGTGTGTGT  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCCAACATATACGCACTATAGAGCGAGCACAGCAATGTGTGTGT  500

seq1  CTGGGTTCCTCTTGAGAGGGCTCTAGGACCCTAAGAATTC  412
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCCTCTTGAGAGGGCTCTAGGACCCTAAGAATTC  540

seq1: chr13_99196542_99197693
seq2: B6Ng01-188I07.g_70_1214

seq1  TTCTAGATTGGAATGAATGTTTACCATAATACTGTAAAGCTGTTGCTCTA  50
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TTCTAGATTGGAATGAATGTGTACCATAATACTGTAAAGCTGTTGCGCTA  50

seq1  TTGTGCTCTCATTTCTAGTGACTTTTTTAGAATTAATGTAATTATGATTT  100
      ||||||||||||||| ||||| ||||||| | ||   |     |||||  
seq2  TTGTGCTCTCATTTCCAGTGAGTTTTTTACAGTTCCAGGCCCCATGATCC  100

seq1  ATGGTTTTGGTATGGTAAATAAGATGTCTTCTTAGAAGTGTTTTTGAGGT  150
      | ||  |||| |||| ||||   |||||||| || ||  |||||||||||
seq2  AGGGGGTTGGGATGGAAAATCCCATGTCTTCGTAAAAACGTTTTTGAGGT  150

seq1  TTGATGTATTCAAGAGTTCCTGAAATTTTATGATGCTGTGTTGGATAAGC  200
      | ||||||||| |||||| |||||||||||||||||||||| ||||||||
seq2  TCGATGTATTCGAGAGTTGCTGAAATTTTATGATGCTGTGTAGGATAAGC  200

seq1  CCTTACTCATTTCTACTGTTGGGCACTTAATTTGATTATAT-AGGCTAGG  249
      ||  || | ||||  ||| |||||| ||||||  | ||| |  ||  | |
seq2  CCCCACCCCTTTCCTCTGCTGGGCAATTAATTCCA-TATGTGGGGGGAAG  249

seq1  AATACTTCCCAGGAAATCAGTAAATTCTGGGGCATTTTTGTATTGTTTCT  299
      ||||||   |  |||||   |  |||||||||||||||||||||||||||
seq2  AATACTGTGCCTGAAATGTCTCCATTCTGGGGCATTTTTGTATTGTTTCT  299

seq1  TTGAAAAACAAAT-TATAGTCTGTGTGTTCCGCCTAGAATTCAGTCAATC  348
      ||||      | | |||| || ||||||||||||||||||  | ||||||
seq2  TTGAGGTGGGATTATATATTC-GTGTGTTCCGCCTAGAATGGA-TCAATC  347

seq1  ACTGTATCTCTTGTATTGATCTTCAAGCTTTTATTTTTCGCTTTCTATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCTCTTGTATTGATCTTCAAGCTTTTATTTTTCGCTTTCTATTT  397

seq1  TTATTTGTTGTTTCCTTAAATATTTCTAAATTTCACTTTTCCTCTCTCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTGTTTCCTTAAATATTTCTAAATTTCACTTTTCCTCTCTCAC  447

seq1  TGAACTCATTTCCAGTTTATACTTTTAATTTCTAAAGTTTCTTTCTTTTC  498
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGAACTCATTTCCAGTTTATACTTTTAATTTCTGAAGTTTCTTTCTTTTC  497

seq1  TTTATAAAGCTTCTTTGGGGGAGAGGATGTTCCTTTCTTGATTTGTGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAGCTTCTTTGGGGGAGAGGATGTTCCTTTCTTGATTTGTGAAA  547

seq1  AATATACCTTTCTTCATCTCCCCAAAGATTTGACTATTTTGTGTTGTATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCTTTCTTCATCTCCCCAAAGATTTGACTATTTTGTGTTGTATT  597

seq1  TAATTTTGTTTCCCCAAGATTCTTA-TTTTTCCATATGGACTTTTTTCTT  647
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  TAATTTTGTTTCCCCAAGATTCATATTTTTTCCATATGGACTTTTTTCTT  647

seq1  TTGTTAATGTTTTTTTTTTCCTTAAAATATCTGCTGGTTCTACATTTTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATGTTTTTTTTTTCCTTAAAATATCTGCTGGTTCTACATTTTCT  697

seq1  CATATTAAAGTAAAATATGTACTGTTTCCAGTTCACTCACTACCTGTCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAAAGTAAAATATGTACTGTTTCCAGTTCACTCACTACCTGTCAA  747

seq1  TCGTGAAAAGAAAGGAATGACCTAAGGCTCCCGTTATGACATCGTATCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAAAAGAAAGGAATGACCTAAGGCTCCCGTTATGACATCGTATCCA  797

seq1  GATGAAATTGAGAGCAATCATTGCCAATATTTATTAAGCACATATTCTTT  847
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATGAAATTGAGAGCAATCATTGCCTATATTTATTAAGCACATATTCTTT  847

seq1  -GATTTAATGCCGATAACTGTAATACAGGCTACAGCAGAGGAAAACTGAA  896
       |||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  GGATTTAATGCCGATGACTGTAATACAGGCTACAGCAGACGAAAACTGAA  897

seq1  GCTTACAGTGTTACATAACTTATCCAGGACCATAGAGCCATATCCAGGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGTGTTACATAACTTATCCAGGACCATAGAGCCATATCCAGGCT  947

seq1  ATCTATATATCCAGGACCTTATAGCCAGCGTGTA-GTGAATGTGAG-TTA  994
      |||||||||||||||||||||||||||||||| | | ||||||||| | |
seq2  ATCTATATATCCAGGACCTTATAGCCAGCGTGGAGGGGAATGTGAGCTAA  997

seq1  TTAGTTATAAAGCTGTACTGCCTCCTAGTAGATGAAC--TTGTAC-TTAG  1041
      | | |||| ||||||||||||||||||||||||||||  | |||| ||||
seq2  TGACTTAT-AAGCTGTACTGCCTCCTAGTAGATGAACCTTGGTACTTTAG  1046

seq1  CATTGGCCATAATTTATTCTTTCTGT-CTTTCACTCTATATTCTCGGTTC  1090
       ||| ||||| |  |  || |||||| | | ||||||| | ||||| |  
seq2  GATT-GCCATTACCTGATCATTCTGTCCATCCACTCTAGA-TCTCGAT--  1092

seq1  CAGAAGAAATAATTTAGAGG-TAATTCGTAACGAGGTAGGAACTGATGGG  1139
        |||| ||| ||||||||| | |||||| || ||||||||||||||  |
seq2  -CGAAGGAAT-ATTTAGAGGCTCATTCGT-ACCAGGTAGGAACTGATATG  1139

seq1  GGGGGGGGGGCGG  1152
      ||| ||       
seq2  GGGCGG-------  1145