BAC Information

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BAC

Clone NameB6Ng01-189P09
Chromosome13 (Build37)
Map Location 66,535,636 - 66,723,021
singlet/doubletdoublet
Overlap gene2410141K09Rik, C330014B19Rik
Upstream geneEG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915
Downstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189P09.bB6Ng01-189P09.g
ACCGA013843GA013844
length1,058599
definitionB6Ng01-189P09.b B6Ng01-189P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,535,636 - 66,536,681)(66,722,454 - 66,723,021)
sequence
gaattcaatgactctgaagcctcaggtagtattgatgtcatgagcatatg
tcatcctggaaaatagaatataacctatatatttagtcaaatttcaaact
tgaagatgtggataaagaactgcacagaagcatatgcttattgtacaaaa
acatgataggtggctgatgtggtatctatacctactaataggacaaaaag
gatttcacagagaaattttatctcgaacaacaaaatccaaaataataaaa
ttaaaaatataaaaccaccaggcttgtaaaataggttagcattgaatagc
aaatgtgtctactgtatcgtatgtgatttggggacagagaccaaatggtg
aatgtatgggtgcctgagaaaaaagaccctgactcccctgcaaatgccac
gcaaggaaacaaaaatgatagaaagaactcatagttctgcactgaagttc
ctacaaagaattatacattaactgcagttctgtattcatcttgcagaaac
atgcagtacaccagtttaaattgcaacattaataaaattttgctaaaatt
ttgaattatgaaaattatgaatcagtttaaaccacaacgctgtagacaca
aagaacagcatttttcctctcaaagagaaatgcagaggcaaagctggatc
agagactgagggaatggccaatgaaaacttgcccaaatagagacatatcc
cattttatttgtaacaactagaaactgcaaacaatccagacgtccctcac
ccgaaatacgtatacagaaaatgtggttttatttacaaaatggaatacta
ataagctattaaaaacaaggacatcatgaattttccaggccaatggatac
aggtagaaactatcatccttgagtgaggtaacccagaaacaaaatgacat
gaatatatgtacttcactttacagtgaacattaattcataaaggacagga
tatccacacctattattcccatagaacccaaagaagctaacaagaagaaa
agcctaaatgaagcattgttggatctcattccaaaagggggaataaaacc
agtcagag
gaattcatacaggggaaaacccttatcaatgtagtgaatgtgacaaatgc
ttcactcacaaatatgatcttataattcatcagagaattcatacaggaga
gaaacctaataaatgtagggaatgtgacaaatgctttagtaacaaatgca
gtcttagaaatcatcagagaattcatacaggagagaagccttaaaagttt
agtgaatgtgacaaacactttacccacaaacacagtcttagtattcatca
ggtaattcatacaggagagaaaccttataaatgtaatgaatgtgatgaat
tctttagacttaaatgtagtttttacactcatcaaagaatgcacacacta
gagaatatctaaaaatgaagcaaataagacaaacccttcaccaagaaaga
tcatcttagaactcatcaaagaatacatacaggagggtgatctttcaaat
gtaaatgttcaaagtctttactgttaggtcatctctgacatcagagacta
cacacaggagagaaacctcatgagaacagacctttacctgaaagttagtt
ctaagaaaatatctagaaatttatagtgaggaaggggtggggtggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66535636_66536681
seq2: B6Ng01-189P09.b_44_1101

seq1  GAATTCAATGACTCTGAAGCCTCAGGTAGTATTGATGTCATGAGCATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGACTCTGAAGCCTCAGGTAGTATTGATGTCATGAGCATATG  50

seq1  TCATCCTGGAAAATAAAATAT-ACCTATATATTTAGTGAAATTTCAAAAT  99
      ||||||||||||||| ||||| ||||||||||||||| |||||||||| |
seq2  TCATCCTGGAAAATAGAATATAACCTATATATTTAGTCAAATTTCAAACT  100

seq1  TGAAGATGTGGATAAAGAACTGCACAGAAGCATATGCTTATTGTACAAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGTGGATAAAGAACTGCACAGAAGCATATGCTTATTGTACAAAA  150

seq1  ACATGATAGGTGGCTGATGTGGTATCTATACCTACTAACAGGACAAAAAG  199
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACATGATAGGTGGCTGATGTGGTATCTATACCTACTAATAGGACAAAAAG  200

seq1  GATTTCACAGAGAAATTTTATCTCGAACAACAAAATCCAAAATAATAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACAGAGAAATTTTATCTCGAACAACAAAATCCAAAATAATAAAA  250

seq1  TTAAAAATATAAAACCACCAGGCTTGCAAAATAACTTAGCATTGAATAGT  299
      |||||||||||||||||||||||||| ||||||  |||||||||||||| 
seq2  TTAAAAATATAAAACCACCAGGCTTGTAAAATAGGTTAGCATTGAATAGC  300

seq1  AAATGTGTCTACTGTATCTTATGTGATTTAGGGACAGAGACCAAATGGTG  349
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  AAATGTGTCTACTGTATCGTATGTGATTTGGGGACAGAGACCAAATGGTG  350

seq1  AATGTATGGGTGCCTGAGAAGAATGACCCTCACTCCCCTACAAATGCCAC  399
      |||||||||||||||||||| || |||||| |||||||| ||||||||||
seq2  AATGTATGGGTGCCTGAGAAAAAAGACCCTGACTCCCCTGCAAATGCCAC  400

seq1  CCAAGGAAACAAAAATGATAGAAAGAACCCATAGTTCTGCACTGAAGTTC  449
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCAAGGAAACAAAAATGATAGAAAGAACTCATAGTTCTGCACTGAAGTTC  450

seq1  CTACAAAGCATTATACATTAACTGCAGTTCTGTATTCATCTTGCAGAAAC  499
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGAATTATACATTAACTGCAGTTCTGTATTCATCTTGCAGAAAC  500

seq1  ATGAGGTACACCGGTTTAAGCTGTAACATTAATAAAATTTGGCTAAAA-T  548
      |||  ||||||| ||||||  || |||||||||||||||| ||||||| |
seq2  ATGCAGTACACCAGTTTAAATTGCAACATTAATAAAATTTTGCTAAAATT  550

seq1  TTGAATTATGAAAATTATGAATCAGTTTAAACCACAACGCTGTAGACACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTATGAAAATTATGAATCAGTTTAAACCACAACGCTGTAGACACA  600

seq1  AAGAACAGCATTTGTCCTGTCAAAGAGAAATGCAGAGGCAAAGCTGGATC  648
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  AAGAACAGCATTTTTCCTCTCAAAGAGAAATGCAGAGGCAAAGCTGGATC  650

seq1  AGAGACTGAGGGAATGGCCAATGAAAACTTGCCCAAGTAGAGAAATATCC  698
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  AGAGACTGAGGGAATGGCCAATGAAAACTTGCCCAAATAGAGACATATCC  700

seq1  CATTTTATTTGTAACAACTAGAAACTGCAAACAATCCAGATGTCGCTCAC  748
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  CATTTTATTTGTAACAACTAGAAACTGCAAACAATCCAGACGTCCCTCAC  750

seq1  CCGAAATACGTATACAGAAAATGTGG-TTTATTTACAAAATGGAATACTA  797
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  CCGAAATACGTATACAGAAAATGTGGTTTTATTTACAAAATGGAATACT-  799

seq1  AATAAGCTATTAAAAACAAGGACATCATGAATTTTCCAGGCCAATGGATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTATTAAAAACAAGGACATCATGAATTTTCCAGGCCAATGGATA  849

seq1  CAGGTAGAAACTATCATCC-TGAGTGAGGCAACCCAGAAACAAAATGACA  896
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  CAGGTAGAAACTATCATCCTTGAGTGAGGTAACCCAGAAACAAAATGACA  899

seq1  TGAATATATGTAC-TCACTTACAAGTAAACATTAA-TCATAAAGTACAGG  944
      ||||||||||||| ||||||   ||| |||||||| |||||||| |||||
seq2  TGAATATATGTACTTCACTTTACAGTGAACATTAATTCATAAAGGACAGG  949

seq1  ATATCCACA-CTA-TATT-CCATAGAA-CCAAAGAAGCTAAACAAGAAGA  990
      ||||||||| ||| |||| |||||||| ||||||||||| ||||||||||
seq2  ATATCCACACCTATTATTCCCATAGAACCCAAAGAAGCT-AACAAGAAGA  998

seq1  AAAGCCCTAATG-AGCATTGTTAAATCTCATTC--AAAAGGGGAATAAAA  1037
      ||||||  |||| |||||||||  |||||||||  ||| |||||||||||
seq2  AAAGCCTAAATGAAGCATTGTTGGATCTCATTCCAAAAGGGGGAATAAAA  1048

seq1  -CAGTCAGAG  1046
       |||||||||
seq2  CCAGTCAGAG  1058

seq1: chr13_66722454_66723021
seq2: B6Ng01-189P09.g_101_668 (reverse)

seq1  TCCCCCACCCCACCCCTTCCTCACTATAAATTTCTAGATATTTTCTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCCCACCCCTTCCTCACTATAAATTTCTAGATATTTTCTTAGA  50

seq1  ACTAACTTTCAGGTAAAGGTCTGTTCTCATGAGGTTTCTCTCCTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTTTCAGGTAAAGGTCTGTTCTCATGAGGTTTCTCTCCTGTGTGT  100

seq1  AGTCTCTGATGTCAGAGATGACCTAACAGTAAAGACTTTGAACATTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGATGTCAGAGATGACCTAACAGTAAAGACTTTGAACATTTACA  150

seq1  TTTGAAAGATCACCCTCCTGTATGTATTCTTTGATGAGTTCTAAGATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGATCACCCTCCTGTATGTATTCTTTGATGAGTTCTAAGATGAT  200

seq1  CTTTCTTGGTGAAGGGTTTGTCTTATTTGCTTCATTTTTAGATATTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGGTGAAGGGTTTGTCTTATTTGCTTCATTTTTAGATATTCTCT  250

seq1  AGTGTGTGCATTCTTTGATGAGTGTAAAAACTACATTTAAGTCTAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGCATTCTTTGATGAGTGTAAAAACTACATTTAAGTCTAAAGAA  300

seq1  TTCATCACATTCATTACATTTATAAGGTTTCTCTCCTGTATGAATTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACATTCATTACATTTATAAGGTTTCTCTCCTGTATGAATTACCT  350

seq1  GATGAATACTAAGACTGTGTTTGTGGGTAAAGCGTTTGTCACATTCACTA  400
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATGAATACTAAGACTGTGTTTGTGGGTAAAGTGTTTGTCACATTCACTA  400

seq1  AACTTTTAAGGCTTCTCTCCTGTATGAATTCTCTGATGATTTCTAAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAAGGCTTCTCTCCTGTATGAATTCTCTGATGATTTCTAAGACT  450

seq1  GCATTTGTTACTAAAGCATTTGTCACATTCCCTACATTTATTAGGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTTACTAAAGCATTTGTCACATTCCCTACATTTATTAGGTTTCT  500

seq1  CTCCTGTATGAATTCTCTGATGAATTATAAGATCATATTTGTGAGTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTATGAATTCTCTGATGAATTATAAGATCATATTTGTGAGTGAAG  550

seq1  CATTTGTCACATTCACTA  568
      ||||||||||||||||||
seq2  CATTTGTCACATTCACTA  568