BAC Information

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BAC

Clone NameB6Ng01-190C23
Chromosome13 (Build37)
Map Location 78,301,196 - 78,421,062
singlet/doubletdoublet
Overlap gene1110033M05Rik, Nr2f1, EG666856, LOC268676, LOC100042683
Upstream gene2210408I21Rik, LOC675063, D13Mgi7, 1700013G10Rik
Downstream geneLOC622365, LOC100043052, EG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190C23.bB6Ng01-190C23.g
ACCGA014003GA014004
length1,1281,215
definitionB6Ng01-190C23.b B6Ng01-190C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,301,196 - 78,302,332)(78,419,867 - 78,421,062)
sequence
gaattctgttaagaattattagaatttattcaggccctttaagacttacc
agtgaaacacctactcaccaattccttccactgaataaattgaatttttc
cagaaatgtgtaagcaaatagagaaatgacctcatttttcagtgtagata
cagtgctataggaggctctgtctccagaggatgacttcaatattggatct
tagttccaagaacaagttcacaaggccagagaagagggggcgaagacatc
attgtgaagggcacctggcaagaaatgagttctccagtagggacagctcc
cacagctaagtcacatgcacaaacttgtagctttctgctctctggccaac
caagtgcagccatagcatctttattgttatatctcccagattgtgatact
gtcacaaagctgttgctaggcaacaaatgtggttaccaggtctcagcgaa
tagctgaagggggaaggcaaagtgttgcaccattgtagagtaaccatagc
aatgacctactattacagactaaagaattatcattaacaatgttaaagta
tcagaggccctgaattcagagacttccaagcagattctgcataattgagt
gattgcagttgagatttcaactgtttcctaatgtctatgagggaggattt
gtaattatttttattttaattaaaaaattgattatgaagttattggttaa
attatatatgctatcacaaatattttttttcttaagcccatattatttct
tcgtgtattcccatgcctacatgctacctgcttcctttttcacaaactaa
aggttccatttggtttgaagaatagtgtataatattcaacccaatattaa
aaccacagagagaaactgtagtaaaataacctggtaaattgaaaatctaa
cgtttttctgaattccccgactgaagagggggcctaaatgctctttcagt
ggttctgctttgaaacaggtttgtctggcttttctagatttgttctaaaa
tctgtaagcatgtggcccgctagatactttcaggccctggtctctttttg
aatcgtcttcataaatattctcagtgattgatccagtgacctccacctga
gaacagtcgttgtcaacatcagagacta

gaattcctacccaaagcaaaattaacaatagcaataaagatgtccaaagg
aagacaagaagctctgaggaatcctaacttcccttcctgtttcagaaaat
catagcagtcaatatcacaacatatactaataagttagctcctggcctgg
agagatgacttagcggtttagagcacttggctgctcttctggagattctg
agttcaattcctagcaaccacatgatggttcacaaccacctgtaatagga
ttcctcttccgaggaaacatgaaaacatatattttacttataaagtaaat
aaatattttaaataaatgaattagctcctaataaataacatataaataac
aaataaataagaactaataaattaccatgtctctgaaaactattacactg
cttctggtatcctatgtgagcacttcaaatttaagaagcttataactgac
ccaagaattttcttgccattatttttaatcttctttattattttattata
tttgctatttttccaaaatctctttttccataaatttttcaagactataa
ctttgataggtggtggtggcacatgcctttaatccagcacttgggagaca
gaggcaagaagatctctgaggctgagaccagcccggaatacagagttcca
gggcagacagccagggctacacagagaaaccttgtctcaaaagaaaacat
ccaatttccgaacctctatctctaaaaaagaaaaatcaatctaaatgtat
tttatataatacctaaattgccaagttgacttggttagttcatttacata
ggtggtttgtataatattccttgagtttttataaacttccaaagccaaga
catagagggagaaaaaaagcaaagaagaggattttgtgaggggttcctgt
ctaagccaactgttggcagaaggcttttgtgtgaactgtttccaagatct
cagtctgaaagacagccaaaggttcaacaaagaataggccccaaatggct
cactacctttcaactttgaccctttgcccagctgtctcacaactttgtaa
cttaaaattctttttgaagtgaaggcttatcattctgtttacaaataatg
ttacttaattttctcaggagcagctggggaagaacataccctaagtcaca
cacatccatgaagtccctcccaggaaatcccatgggccacacgagatttc
ctctaaccaattaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_78301196_78302332
seq2: B6Ng01-190C23.b_47_1174

seq1  GAATTCTGTTAAGAATTATTAGAATTTATTCAGGCCCTTTAAGACTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTAAGAATTATTAGAATTTATTCAGGCCCTTTAAGACTTACC  50

seq1  AGTGAAACACCTACTCACCAATTCCTTCCACTGAATAAATTGAATTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAACACCTACTCACCAATTCCTTCCACTGAATAAATTGAATTTTTC  100

seq1  CAGAAATGTGTAAGCAAATAGAGAAATGACCTCATTTTTCAGTGTAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGTGTAAGCAAATAGAGAAATGACCTCATTTTTCAGTGTAGATA  150

seq1  CAGTGCTATAGGAGGCTCTGTCTCCAGAGGATGACTTCAATATTGGATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTATAGGAGGCTCTGTCTCCAGAGGATGACTTCAATATTGGATCT  200

seq1  TAGTTCCAAGAACAAGTTCACAAGGCCAGAGAAGAGGGGGCGAAGACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCAAGAACAAGTTCACAAGGCCAGAGAAGAGGGGGCGAAGACATC  250

seq1  ATTGTGAAGGGCACCTGGCAAGAAATGAGTTCTCCAGTAGGGACAGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAAGGGCACCTGGCAAGAAATGAGTTCTCCAGTAGGGACAGCTCC  300

seq1  CACAGCTAAGTCACATGCACAAACTTGTAGCTTTCTGCTCTCTGGCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTAAGTCACATGCACAAACTTGTAGCTTTCTGCTCTCTGGCCAAC  350

seq1  CAAGTGCAGCCATAGCATCTTTATTGTTATATCTCCCAGATTGTGATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCAGCCATAGCATCTTTATTGTTATATCTCCCAGATTGTGATACT  400

seq1  GTCACAAAGCTGTTGCTAGGCAACAAATGTGGTTACCAGGTCTCAGCGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAAGCTGTTGCTAGGCAACAAATGTGGTTACCAGGTCTCAGCGAA  450

seq1  TAGCTGAAGGGGGAAGGCAAAGTGTTGCACCATTGTAGAGTAACCATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAAGGGGGAAGGCAAAGTGTTGCACCATTGTAGAGTAACCATAGC  500

seq1  AATGACCTACTATTACAGACTAAAGAATTATCATTAACAATGTTAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTACTATTACAGACTAAAGAATTATCATTAACAATGTTAAAGTA  550

seq1  TCAGAGGCCCTGAATTCAGAGACTTCCAAGCAGATTCTGCATAATTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGCCCTGAATTCAGAGACTTCCAAGCAGATTCTGCATAATTGAGT  600

seq1  GATTGCAGTTGAGATTTCAACTGTTTCCTAATGTCTATGAGGGAGGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAGTTGAGATTTCAACTGTTTCCTAATGTCTATGAGGGAGGATTT  650

seq1  GTAATTATTTTTATTTTAATTAAAAAATTGATTATGAAGTTATTGGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATTTTTATTTTAATTAAAAAATTGATTATGAAGTTATTGGTTAA  700

seq1  ATTATATATGCTATCACAAATATTTTTTTTCTTAAGCCCATATTATTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATGCTATCACAAATATTTTTTTTCTTAAGCCCATATTATTTCT  750

seq1  TCGTGTATTCCCATGCCTACATGCTACCTGCTTCCTTTTTCACAAACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTATTCCCATGCCTACATGCTACCTGCTTCCTTTTTCACAAACTAA  800

seq1  AGGTTCCATTTGGTTTGAAGAATAGTGTATAATATTCAACCCAATATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCATTTGGTTTGAAGAATAGTGTATAATATTCAACCCAATATTAA  850

seq1  AACCACAGAGAGAAACTGTAGTAAAATAACCTGGTAAATTGAAAATCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGAGAGAAACTGTAGTAAAATAACCTGGTAAATTGAAAATCTAA  900

seq1  CGTTTTTCTGAATTCCCCGACTGAAGAGGGGGCCTAAATGCTCTTTCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTCTGAATTCCCCGACTGAAGAGGGGGCCTAAATGCTCTTTCAGT  950

seq1  GGTTCTGCTTTGAAACAGGGTTTGTCTGGCTTTTCTAGATTTGTTCTAAA  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGTTCTGCTTTGAAACA-GGTTTGTCTGGCTTTTCTAGATTTGTTCTAAA  999

seq1  ATCTGTAAAGCATGTGGCCCGCCTAGGATACTTTCAAGGCCCCTGGTCTC  1050
      |||||| |||||||||||||| ||| ||||||||||  | ||||||||||
seq2  ATCTGT-AAGCATGTGGCCCG-CTA-GATACTTTCA--GGCCCTGGTCTC  1044

seq1  CTTTTGAATCCGTCCTTTCATTAAATATCTCCAGTGATTTGATCCCAGTG  1100
       |||||||| ||||  |||| |||||||   |||||| ||||| ||||||
seq2  TTTTTGAAT-CGTC--TTCA-TAAATATTCTCAGTGA-TTGAT-CCAGTG  1088

seq1  ACCTC--ACTGAG-ACAGTCGTGTCCAACATCAGAGACTA  1137
      |||||   ||||| ||||||||   |||||||||||||||
seq2  ACCTCCACCTGAGAACAGTCGTTGTCAACATCAGAGACTA  1128


seq1: chr13_78419867_78421062
seq2: B6Ng01-190C23.g_62_1276 (reverse)

seq1  CTTAATTG--TA-AGAAAATC---TGTGGCCCATGG---TTTCTGTGA-G  40
      ||||||||  || || |||||   ||||||||||||   || ||| || |
seq2  CTTAATTGGTTAGAGGAAATCTCGTGTGGCCCATGGGATTTCCTGGGAGG  50

seq1  GAC-TCATGG--TTGTGTGACTT-GGGTATG-TCTTCTCAAGCTGCTCCT  85
      ||| ||||||   |||||||||| ||||||| ||||| | ||||||||||
seq2  GACTTCATGGATGTGTGTGACTTAGGGTATGTTCTTCCCCAGCTGCTCCT  100

seq1  GAGAAA--TAAGT-ACATTATTTGTAAACAGAATTGATAAGCCTTCAC-T  131
      ||||||  ||||| ||||||||||||||||||| |||||||||||||| |
seq2  GAGAAAATTAAGTAACATTATTTGTAAACAGAA-TGATAAGCCTTCACTT  149

seq1  CAAAA--GATTTTAAGTTTACAAAG-TGTGAGACAGCTGGGCAAAGGGTC  178
      |||||   |||||||| |||||||| ||||||||||||||||||||||||
seq2  CAAAAAGAATTTTAAG-TTACAAAGTTGTGAGACAGCTGGGCAAAGGGTC  198

seq1  AAAGTTGAAAGGTAGTGAGCCATTTGGGGCCTATTCTTTTGTTGAACCTT  228
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGTTGAAAGGTAGTGAGCCATTTGGGGCCTATTC-TTTGTTGAACCTT  247

seq1  TGGCTGTCTTTCAGACTGAGATCTTGGAAACAGTTCACACAAAAGCCTTC  278
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCTTTCAGACTGAGATCTTGGAAACAGTTCACACAAAAGCCTTC  297

seq1  TGCCAACAGTTGGCTTAGACAGGAACCCCTCACAAAATCCTCTTCTTTGC  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACAGTTGGCTTAGACAGGAACCCCTCACAAAATCCTCTTCTTTGC  347

seq1  TTTTTTTCTCCCTCTATGTCTTGGCTTTGGAAGTTTATAAAAACTCAAGG  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCCCTCTATGTCTTGGCTTTGGAAGTTTATAAAAACTCAAGG  397

seq1  AATATTATACAAACCACCTATGTAAATGAACTAACCAAGTCAACTTGGCA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATACAAACCACCTATGTAAATGAACTAACCAAGTCAACTTGGCA  447

seq1  ATTTAGGTATTATATAAAATACATTTAGATTGATTTTTCTTTTTTAGAGA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTATTATATAAAATACATTTAGATTGATTTTTCTTTTTTAGAGA  497

seq1  TAGAGGTTCGGAAATTGGATGTTTTCTTTTGAGACAAGGTTTCTCTGTGT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTTCGGAAATTGGATGTTTTCTTTTGAGACAAGGTTTCTCTGTGT  547

seq1  AGCCCTGGCTGTCTGCCCTGGAACTCTGTATTCCGGGCTGGTCTCAGCCT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCTGCCCTGGAACTCTGTATTCCGGGCTGGTCTCAGCCT  597

seq1  CAGAGATCTTCTTGCCTCTGTCTCCCAAGTGCTGGATTAAAGGCATGTGC  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTTCTTGCCTCTGTCTCCCAAGTGCTGGATTAAAGGCATGTGC  647

seq1  CACCACCACCTATCAAAGTTATAGTCTTGAAAAATTTATGGAAAAAGAGA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACCTATCAAAGTTATAGTCTTGAAAAATTTATGGAAAAAGAGA  697

seq1  TTTTGGAAAAATAGCAAATATAATAAAATAATAAAGAAGATTAAAAATAA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAAAATAGCAAATATAATAAAATAATAAAGAAGATTAAAAATAA  747

seq1  TGGCAAGAAAATTCTTGGGTCAGTTATAAGCTTCTTAAATTTGAAGTGCT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGAAAATTCTTGGGTCAGTTATAAGCTTCTTAAATTTGAAGTGCT  797

seq1  CACATAGGATACCAGAAGCAGTGTAATAGTTTTCAGAGACATGGTAATTT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGGATACCAGAAGCAGTGTAATAGTTTTCAGAGACATGGTAATTT  847

seq1  ATTAGTTCTTATTTATTTGTTATTTATATGTTATTTATTAGGAGCTAATT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCTTATTTATTTGTTATTTATATGTTATTTATTAGGAGCTAATT  897

seq1  CATTTATTTAAAATATTTATTTACTTTATAAGTAAAATATATGTTTTCAT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTAAAATATTTATTTACTTTATAAGTAAAATATATGTTTTCAT  947

seq1  GTTTCCTCGGAAGAGGAATCCTATTACAGGTGGTTGTGAACCATCATGTG  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCGGAAGAGGAATCCTATTACAGGTGGTTGTGAACCATCATGTG  997

seq1  GTTGCTAGGAATTGAACTCAGAATCTCCAGAAGAGCAGCCAAGTGCTCTA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAGGAATTGAACTCAGAATCTCCAGAAGAGCAGCCAAGTGCTCTA  1047

seq1  AACCGCTAAGTCATCTCTCCAGGCCAGGAGCTAACTTATTAGTATATGTT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCTAAGTCATCTCTCCAGGCCAGGAGCTAACTTATTAGTATATGTT  1097

seq1  GTGATATTGACTGCTATGATTTTCTGAAACAGGAAGGGAAGTTAGGATTC  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTGACTGCTATGATTTTCTGAAACAGGAAGGGAAGTTAGGATTC  1147

seq1  CTCAGAGCTTCTTGTCTTCCTTTGGACATCTTTATTGCTATTGTTAATTT  1178
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCTTCTTGTCTTCCTTTGGACATCTTTATTGCTATTGTTAATTT  1197

seq1  TGCTTTGGGTAGGAATTC  1196
      ||||||||||||||||||
seq2  TGCTTTGGGTAGGAATTC  1215


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