BAC Information

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BAC

Clone NameB6Ng01-190L24
Chromosome13 (Build37)
Map Location 110,352,307 - 110,510,415
singlet/doubletdoublet
Overlap genePde4d
Upstream geneEG668144, LOC621663, LOC100040968
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190L24.bB6Ng01-190L24.g
ACCGA014428GA014429
length1,1591,076
definitionB6Ng01-190L24.b B6Ng01-190L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,352,307 - 110,353,459)(110,509,315 - 110,510,415)
sequence
gaattcatataacttcaagtttagataacaccaactctggcactcattgc
atagaaccagagaactgggaaaataggtttttttttaaattaatttatca
catttgatccactgacaccaacactagccaaactattactattacctcac
agtctggtgtctcctttttaatcaagccccacccaccaaaataaaccaga
tcttttcttacattgacacagatgactccaagtcactaaaggaatttatg
aaccaatatctagttctctgcttctaattcgacattttgttgggtgcata
tgtattcattaaattaattaagtaaaatctccttcaccaaagtatcttag
gagagtatcaataactaactttacaaattaaagggcttactatgtctgtt
agttaaggttttattgctgtgaacagaccatgaccaaggcaacttctata
aaaaacatttcactgggattgacttacagggtcagtttcagtccattatc
atcatggcaggaaacatggcagtgtgcaggcaggcactggctctgaagga
gctgagagttctacctctttacccataggaagcccgggagcaaactgtct
tcaggcagctaggagtagggtctcaaagtctactcccacagtgacacact
tcctccaacaaggccacacctcctaataatgccacaccctgggccaagca
tatacaaaccaccacactatgtcttttcaaatgcataaggcaggagagaa
tgggagaaggggtcagatagaaacagaactgagtgaaatagtgtgtatgg
caggggcagggggaactaatgcatacctggacctttactttactgtaagt
cttagacctggcagtatcacactccagaaacttctagagtgtttctgttg
taatgatgtctcagcaagataccctttggacttctcttttggtgcatttg
ttacatgtttttaattccatgatggcaattctccatctgtgagggatatc
tggttctttgaggtcgccagagttctttggcaataaatctatgcttaaag
gggatgatccaggtagctatgccattggggtcaacaatagaaagttacct
atcctgatctcccagttgacggtcactactcagctataaaaaggatgacc
ttatgaatt

gaattctctatatatggatatctccatgtcctttcaaatctttgggtttt
ttatttcttcatactgaggcatgtcattgccatattagctattaactcag
gctaagcttgaactcccacactcaaaaaatgatcctcctgcttcagcctc
cacagtacagcaggggttgtggaccaattgcctgctctgaactccttttt
aggcatatggctatgctggtgagagagttgttaggtatatggctatgcca
gtgagagagatctgggagagtttaccaagcaaacacctgctgcagctggc
aaaagatgcacattacagctcagcagcctgcagaatctcacaagcatcaa
agccacaattttactggacaaggtcgtactggtgccctcttagtgagttt
tgtcaaacaccaagagccgactgctctgatctcagctcagtttcaagttc
aatgacgtgtacaggtgaggataagagggagaaaatgagaaacatttagg
taagatgagtttagccatattagacgagtctgtagtatagacagtaatca
aggaagcaccaacaatgccaatcacttaaaattgcacatttacgctttct
agtgcaagaataatgacctggtaatactcttcattcaaacaagcaggcca
gttaatcctgaagcaagaagcctgtctccagctactaatcaggataatga
tctaatgtcagcgttgatgataactaacgagttgactaagtatttggttg
aggttttattgcctggtaaggcttgcgttcgattttttttttttttggca
cagattaatatttaacttaatccttttaacaatcccagggagaagctagt
actatcatcttcaaagacatggaatcggaggtttatttcagtttaataat
tacaacatgatctagcactagcgtcaaagcacaagaggtcaaagggttta
ttgtttcttttatttttttgcacatatcctgatagtgcaggctagctagc
tctcagataactgactgctgttgatgtagaatttatcgacactgaactgt
ctatacgagagaaggactgccaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110352307_110353459
seq2: B6Ng01-190L24.b_45_1203

seq1  GAATTCATATAACTTCAAGTTTAGATAACACCAACTCTGGCACTCATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAACTTCAAGTTTAGATAACACCAACTCTGGCACTCATTGC  50

seq1  ATAGAACCAGAGAACTGGGAAAATAGGTTTTTTTTTAAATTAATTTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACCAGAGAACTGGGAAAATAGGTTTTTTTTTAAATTAATTTATCA  100

seq1  CATTTGATCCACTGACACCAACACTAGCCAAACTATTACTATTACCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATCCACTGACACCAACACTAGCCAAACTATTACTATTACCTCAC  150

seq1  AGTCTGGTGTCTCCTTTTTAATCAAGCCCCACCCACCAAAATAAACCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGTGTCTCCTTTTTAATCAAGCCCCACCCACCAAAATAAACCAGA  200

seq1  TCTTTTCTTACATTGACACAGATGACTCCAAGTCACTAAAGGAATTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTACATTGACACAGATGACTCCAAGTCACTAAAGGAATTTATG  250

seq1  AACCAATATCTAGTTCTCTGCTTCTAATTCGACATTTTGTTGGGTGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATATCTAGTTCTCTGCTTCTAATTCGACATTTTGTTGGGTGCATA  300

seq1  TGTATTCATTAAATTAATTAAGTAAAATCTCCTTCACCAAAGTATCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCATTAAATTAATTAAGTAAAATCTCCTTCACCAAAGTATCTTAG  350

seq1  GAGAGTATCAATAACTAACTTTACAAATTAAAGGGCTTACTATGTCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTATCAATAACTAACTTTACAAATTAAAGGGCTTACTATGTCTGTT  400

seq1  AGTTAAGGTTTTATTGCTGTGAACAGACCATGACCAAGGCAACTTCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGGTTTTATTGCTGTGAACAGACCATGACCAAGGCAACTTCTATA  450

seq1  AAAAACATTTCACTGGGATTGACTTACAGGGTCAGTTTCAGTCCATTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATTTCACTGGGATTGACTTACAGGGTCAGTTTCAGTCCATTATC  500

seq1  ATCATGGCAGGAAACATGGCAGTGTGCAGGCAGGCACTGGCTCTGAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGCAGGAAACATGGCAGTGTGCAGGCAGGCACTGGCTCTGAAGGA  550

seq1  GCTGAGAGTTCTACCTCTTTACCCATAGGAAGCCCGGGAGCAAACTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGTTCTACCTCTTTACCCATAGGAAGCCCGGGAGCAAACTGTCT  600

seq1  TCAGGCAGCTAGGAGTAGGGTCTCAAAGTCTACTCCCACAGTGACACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAGCTAGGAGTAGGGTCTCAAAGTCTACTCCCACAGTGACACACT  650

seq1  TCCTCCAACAAGGCCACACCTCCTAATAATGCCACACCCTGGGCCAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAACAAGGCCACACCTCCTAATAATGCCACACCCTGGGCCAAGCA  700

seq1  TATACAAACCACCACACTATGTCTTTTCAAATGCATAAGGCAGGAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAACCACCACACTATGTCTTTTCAAATGCATAAGGCAGGAGAGAA  750

seq1  TGGGAGAAGGGGTCAGATAGAAACAGAACTGAGTGAAATAGTGTGTATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAAGGGGTCAGATAGAAACAGAACTGAGTGAAATAGTGTGTATGG  800

seq1  CAGGGGCAGGGGGAACTAATGCATACCTGGACCTTTACTTTACTGTAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCAGGGGGAACTAATGCATACCTGGACCTTTACTTTACTGTAAGT  850

seq1  CTTAGACCTGGCAGTATCACACTCCAGAAACTTCTAGAGTGTTTCTGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACCTGGCAGTATCACACTCCAGAAACTTCTAGAGTGTTTCTGTTG  900

seq1  TAATGATGTCTCAGCAAGATACCCTTTGGACTTCTCTTTTGGTGCATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGTCTCAGCAAGATACCCTTTGGACTTCTCTTTTGGTGCATTTG  950

seq1  TTACATG-TTTTAATTCCATGATGGCAATTCTCCATCTGTGAAGGGATAT  999
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  TTACATGTTTTTAATTCCATGATGGCAATTCTCCATCTGTG-AGGGATAT  999

seq1  CTGGTTCTTTGAGGTCGCCAAGAGTTCTTTGGCAATAAATCTATGCTTAA  1049
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGGTTCTTTGAGGTCGCC-AGAGTTCTTTGGCAATAAATCTATGCTTAA  1048

seq1  AGGGGATGATCCAGTTAGCTAATGCCATTTGGGGTCAAC-ATAGAAAG-T  1097
      |||||||||||||| ||||| |||||| ||||||||||| |||||||| |
seq2  AGGGGATGATCCAGGTAGCT-ATGCCA-TTGGGGTCAACAATAGAAAGTT  1096

seq1  AACTATCTTGATCTCCCAGTTGACGTTCACTACTCAGCTATTAAAAAGA-  1146
      | ||||| ||||||||||||||||| ||||||||||||||| |||| || 
seq2  ACCTATCCTGATCTCCCAGTTGACGGTCACTACTCAGCTATAAAAAGGAT  1146

seq1  ------ATGAATT  1153
            |||||||
seq2  GACCTTATGAATT  1159


seq1: chr13_110509315_110510415
seq2: B6Ng01-190L24.g_65_1140 (reverse)

seq1  GTTTTGTGCAAAGTCCTGTCTCTCCTTTATAGACAAGTTCAGTTGCTCTG  50
      |||||| ||  |||||| ||||||   ||||||| ||||||||  |   |
seq2  GTTTTG-GC--AGTCCT-TCTCTC--GTATAGAC-AGTTCAGTGTC---G  40

seq1  ATAATATTCTACATTCAAACAAGCAGTCCAGTTAATTCTGAGGAAGCTAG  100
      |||| |||||||| ||||   |||||| ||||||  ||||||  ||||||
seq2  ATAA-ATTCTACA-TCAA--CAGCAGT-CAGTTA--TCTGAG--AGCTAG  81

seq1  CCTAAGGCTGCACTATCAGGGATAATGGTGCAAAAAATAAAAAGAAACAA  150
      |   || ||||||||||| |||||   ||||||||||  |||||||||||
seq2  C--TAGCCTGCACTATCA-GGATA--TGTGCAAAAAAATAAAAGAAACAA  126

seq1  TAAACCCTTTTGACTCTTGTGCTTTGACGCTAGTGCTAGATCATTGTGTA  200
      ||||||||||   |||||||||||||||||||||||||||||||  ||||
seq2  TAAACCCTTTGACCTCTTGTGCTTTGACGCTAGTGCTAGATCATGTTGTA  176

seq1  ATTTATTTAACTGAAATAAACCTCCGATTCCATGTCTTTGAAGATGATAG  250
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTATTAAACTGAAATAAACCTCCGATTCCATGTCTTTGAAGATGATAG  225

seq1  TACTAGCTTCTCCCTGGGATTGTTAAAAGGATTAAGTTAAATATTAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCTTCTCCCTGGGATTGTTAAAAGGATTAAGTTAAATATTAATCT  275

seq1  GTGCCAAAAAAAAAAAAAATCGAACGCAAGCCTTACCAGGCAATAAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAAAAAAAAAAAAATCGAACGCAAGCCTTACCAGGCAATAAAACC  325

seq1  TCAACCAAATACTTAGTCAACTCGTTAGTTATCATCAACGCTGACATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAAATACTTAGTCAACTCGTTAGTTATCATCAACGCTGACATTAG  375

seq1  ATCATTATCCTGATTAGTAGCTGGAGACAGGCTTCTTGCTTCAGGATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATCCTGATTAGTAGCTGGAGACAGGCTTCTTGCTTCAGGATTAA  425

seq1  CTGGCCTGCTTGTTTGAATGAAGAGTATTACCAGGTCATTATTCTTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTGCTTGTTTGAATGAAGAGTATTACCAGGTCATTATTCTTGCAC  475

seq1  TAGAAAGCGTAAATGTGCAATTTTAAGTGATTGGCATTGTTGGTGCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCGTAAATGTGCAATTTTAAGTGATTGGCATTGTTGGTGCTTCC  525

seq1  TTGATTACTGTCTATACTACAGACTCGTCTAATATGGCTAAACTCATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTACTGTCTATACTACAGACTCGTCTAATATGGCTAAACTCATCTT  575

seq1  ACCTAAATGTTTCTCATTTTCTCCCTCTTATCCTCACCTGTACACGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAATGTTTCTCATTTTCTCCCTCTTATCCTCACCTGTACACGTCAT  625

seq1  TGAACTTGAAACTGAGCTGAGATCAGAGCAGTCGGCTCTTGGTGTTTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGAAACTGAGCTGAGATCAGAGCAGTCGGCTCTTGGTGTTTGAC  675

seq1  AAAACTCACTAAGAGGGCACCAGTACGACCTTGTCCAGTAAAATTGTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCACTAAGAGGGCACCAGTACGACCTTGTCCAGTAAAATTGTGGC  725

seq1  TTTGATGCTTGTGAGATTCTGCAGGCTGCTGAGCTGTAATGTGCATCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGCTTGTGAGATTCTGCAGGCTGCTGAGCTGTAATGTGCATCTTT  775

seq1  TGCCAGCTGCAGCAGGTGTTTGCTTGGTAAACTCTCCCAGATCTCTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCTGCAGCAGGTGTTTGCTTGGTAAACTCTCCCAGATCTCTCTCA  825

seq1  CTGGCATAGCCATATACCTAACAACTCTCTCACCAGCATAGCCATATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATAGCCATATACCTAACAACTCTCTCACCAGCATAGCCATATGCC  875

seq1  TAAAAAGGAGTTCAGAGCAGGCAATTGGTCCACAACCCCTGCTGTACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGAGTTCAGAGCAGGCAATTGGTCCACAACCCCTGCTGTACTGT  925

seq1  GGAGGCTGAAGCAGGAGGATCATTTTTTGAGTGTGGGAGTTCAAGCTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGAAGCAGGAGGATCATTTTTTGAGTGTGGGAGTTCAAGCTTAG  975

seq1  CCTGAGTTAATAGCTAATATGGCAATGACATGCCTCAGTATGAAGAAATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTAATAGCTAATATGGCAATGACATGCCTCAGTATGAAGAAATA  1025

seq1  AAAAACCCAAAGATTTGAAAGGACATGGAGATATCCATATATAGAGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCAAAGATTTGAAAGGACATGGAGATATCCATATATAGAGAATT  1075

seq1  C  1101
      |
seq2  C  1076


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