BAC Information

Click to search

BAC

Clone NameB6Ng01-191E21
Chromosome13 (Build37)
Map Location 71,429,331 - 71,490,725
singlet/doubletdoublet
Overlap genenone
Upstream geneEG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC627230, LOC100042360, Irx1, LOC100042828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191E21.bB6Ng01-191E21.g
ACCGA014831GA014832
length1,1111,092
definitionB6Ng01-191E21.b B6Ng01-191E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,429,331 - 71,430,444)(71,489,627 - 71,490,725)
sequence
gaattccacaagaacactgagctacacaactgtaatatatatgtagaggg
cctaggtcagacctatagaggctccctgatgcctgcctgtgagcccactt
gtgtcccactcagttgattccttaggccttgttcttgtcatgtctttgat
ccctctgactcctcccatctttcttactgctcctccacagagctccacct
gatatttgcctgtggcattatgcaactgttctcaccatcagttactagat
gaagtctcttagatgatgattatgctaggttctgggctcaggacattcta
cagccatgttttattggtttctttctccattttgattcactattatattt
ttattgttgtgtcttctttctctttcttcctttcttccttccttccttcc
ttccttccttccttccttccttccttccttcctttctttctttctttctt
tctttctttcttttctttctttcatgtgtgagtgtctacaggtatgtatg
tacaggtaccacgtgcctggtagctctgtgaaccagaagagggtatcaga
tcccttggaactggagttacaagccatgtgtgaatatgaggcatactgca
aacctaccccattcctctgaaagagctgcaagagctcttaaacactgagc
catttctatatttcctcttgtggctttatctttttttttttttaaattca
ctttacaacccaatatcagcccctcctctcctcccagtacccctcatgca
ggtcctctgtacattttagcttcccctctcattgttgtcacacacacaca
ctcacctcccccccaccccccgagatccagttgctgtgggaccagtaaca
tctccttccactgaggctagacaaggtggtccatttagggtcacagaatt
cacaggcaggcaggcaggtaataggctcagggacagccctactccagttg
ttggtgagccagcattactcttgtggttctaataaatttaaagttaacat
aagtcttagaactacaatttttttttcacctggtgacaactggttggatt
tttccaatgattagattccatattgacattattttaaaaggtaatttagc
aatttgactga

gaattctgttccaggagcggatactgtgtgtgctgcatagaactcagcct
aactacagatgtgtaggacccgtacaaacaggatcagagggacttagagt
ggttcagtattatagcccttacctaggcacacaagggtgaggttctgtgt
tccaggtatgaaagctcttacctcccctaaaaaggctagaattctttctt
gagtcacataaaagatgtgatgtataacattgaagggatgcattctcaat
aggaaaaccaaagtaattaatatgtataaactgttaatcatccccaaatt
aaactctgatgtagtaaaaaatccaaagccaatataggatgtttgggtgg
agatagtcgatagacataaattatccacttgaaaggtaagtagatagata
acagagatctaatttctgtagatgacctgtctccatccagaagaatcagg
ctggacactgggttatgttgtgtggtccagtcatgcagattactttccta
ttttcaactctaatgaaaagaataattatgacttattttgtctggagaaa
aaaaatgacacaaatcccaaattctaccaaagaaaatcatagagtagctt
gcaaatcacaaatgcttcgaaaagcaagacacaaatgtgcggcggtttgg
gtttgtgatcaaccaccgggaaggatttagcaccccacttcgccaaatga
gcatcacttaatcttattaagaggtgagaagatatttgataaactgcagc
tattatatctaatcactgtgttaaggaaaagagacacgggcgcttattca
cagaaacactgagcccattagaattcagtctgaaacaccataattaccag
gagaatctggtgaaaatgtaattagtgctaagagcaggtgagctgtgcca
actcccagccaatattgttcctggggtctcagccagaacagtgcaaagaa
aaaaagaaagtaaggacctcggagaatgaatctcaagcagccatcaccgt
agtgagctggctacatggggggtccagagaggctacggagagcttctgaa
gtgggggtgctcagtgtactctgtgcttctgatagcaactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71429331_71430444
seq2: B6Ng01-191E21.b_44_1154

seq1  GAATTCCACAAGAACACTGAGCTACACAACTGTAATATATATGTAGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAGAACACTGAGCTACACAACTGTAATATATATGTAGAGGG  50

seq1  CCTAGGTCAGACCTATAGAGGCTCCCTGATGCCTGCCTGTGAGCCCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTCAGACCTATAGAGGCTCCCTGATGCCTGCCTGTGAGCCCACTT  100

seq1  GTGTCCCACTCAGTTGATTCCTTAGGCCTTGTTCTTGTCATGTCTTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCACTCAGTTGATTCCTTAGGCCTTGTTCTTGTCATGTCTTTGAT  150

seq1  CCCTCTGACTCCTCCCATCTTTCTTACTGCTCCTCCACAGAGCTCCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGACTCCTCCCATCTTTCTTACTGCTCCTCCACAGAGCTCCACCT  200

seq1  GATATTTGCCTGTGGCATTATGCAACTGTTCTCACCATCAGTTACTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGCCTGTGGCATTATGCAACTGTTCTCACCATCAGTTACTAGAT  250

seq1  GAAGTCTCTTAGATGATGATTATGCTAGGTTCTGGGCTCAGGACATTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTCTTAGATGATGATTATGCTAGGTTCTGGGCTCAGGACATTCTA  300

seq1  CAGCCATGTTTTATTGGTTTCTTTCTCCATTTTGATTCACTATTATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGTTTTATTGGTTTCTTTCTCCATTTTGATTCACTATTATATTT  350

seq1  TTATTGTTGTGTCTTCTTTCTCTTTCTTCCTTTCTTCCTTCCTTCCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTGTGTCTTCTTTCTCTTTCTTCCTTTCTTCCTTCCTTCCTTCC  400

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTT  450

seq1  TCTTTCTTTCTTTTCTTTCTTTCATGTGTGAGTGTCTACAGGTATGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTTCTTTCTTTCATGTGTGAGTGTCTACAGGTATGTATG  500

seq1  TACAGGTACCACGTGCCTGGTAGCTCTGTGAACCAGAAGAGGGTATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTACCACGTGCCTGGTAGCTCTGTGAACCAGAAGAGGGTATCAGA  550

seq1  TCCCTTGGAACTGGAGTTACAAGCCATGTGTGAATATGAGGCATACTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGGAACTGGAGTTACAAGCCATGTGTGAATATGAGGCATACTGCA  600

seq1  AACCTACCCCATTCCTCTGAAAGAGCTGCAAGAGCTCTTAAACACTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACCCCATTCCTCTGAAAGAGCTGCAAGAGCTCTTAAACACTGAGC  650

seq1  CATTTCTATATTTCCTCTTGTGGCTTTATCTTTTTTTTTTTTTAAATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTATATTTCCTCTTGTGGCTTTATCTTTTTTTTTTTTTAAATTCA  700

seq1  CTTTACAACCCAATATCAGCCCCTCCTCTCCTCCCAGTACCCCTCATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAACCCAATATCAGCCCCTCCTCTCCTCCCAGTACCCCTCATGCA  750

seq1  GGTCCTCTGTACATTTTAGCTTCCCCTCTCATTGTTGTCACACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTGTACATTTTAGCTTCCCCTCTCATTGTTGTCACACACACACA  800

seq1  CTCACCTCCCCCCCACCCCCCGAGATCCAGTTGCTGTGGGACCAGTAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCCCCCCCACCCCCCGAGATCCAGTTGCTGTGGGACCAGTAACA  850

seq1  TCTCCTTCCACTGAGGCTAGACAAGGTGGTCCATTTAGGGTCACAGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCCACTGAGGCTAGACAAGGTGGTCCATTTAGGGTCACAGAATT  900

seq1  CACAGGCAGGCAGGCAGGTAATAGGCTCAGGGACAGGCCCTACTCCAGTT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACAGGCAGGCAGGCAGGTAATAGGCTCAGGGACA-GCCCTACTCCAGTT  949

seq1  GTTGGTGAGCCAGCATTACTCTTGTGGTTTCTTAATAAATTTTAAAGTT-  999
      |||||||||||||||||||||||||||||   ||||||| ||||||||| 
seq2  GTTGGTGAGCCAGCATTACTCTTGTGGTT--CTAATAAA-TTTAAAGTTA  996

seq1  ACAT-AGTCTTAG-ACTACATTTTTTTTTTCAC--TGTGAC-ACTGTTTG  1044
      |||| |||||||| |||||| ||||||||||||   ||||| |||| |||
seq2  ACATAAGTCTTAGAACTACAATTTTTTTTTCACCTGGTGACAACTGGTTG  1046

seq1  GAATATTTCCAATTGAATTTAAGAATCCATA-TGACAATTTATATAAAAG  1093
      | || ||||||| |||   | ||| |||||| |||| |||  | ||||||
seq2  G-ATTTTTCCAA-TGA---TTAGATTCCATATTGAC-ATTATTTTAAAAG  1090

seq1  TAAATTTAGCAATTTGACTGA  1114
        |||||||||||||||||||
seq2  GTAATTTAGCAATTTGACTGA  1111


seq1: chr13_71489627_71490725
seq2: B6Ng01-191E21.g_65_1156 (reverse)

seq1  AGAGTTGCTAATACAGAAAACACAGAAGTACCACTGAGCA-CCCCACTTC  49
      ||||||||||   ||| || ||||| |||| ||||||||| |||||||| 
seq2  AGAGTTGCTA--TCAG-AAGCACAG-AGTA-CACTGAGCACCCCCACTT-  44

seq1  CAGAAGCTCTCCGTAGCCTCTCTGGAACCCCCATTGTAGCCAGCTCACTA  99
      |||||||||||||||||||||||||| |||||| ||||||||||||||| 
seq2  CAGAAGCTCTCCGTAGCCTCTCTGGACCCCCCA-TGTAGCCAGCTCACT-  92

seq1  ACGGTGATGGCTGCTTTGAGATTCATTCTCCGAGGTCCTTACTTTC-TTT  148
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  ACGGTGATGGCTGC-TTGAGATTCATTCTCCGAGGTCCTTACTTTCTTTT  141

seq1  TTTCTTTGCACTGTTCTGGCTGAGACCCCAGGAACAATATTGGCTGGGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGCACTGTTCTGGCTGAGACCCCAGGAACAATATTGGCTGGGAG  191

seq1  TTGGCACAGCTCACCTGCTCTTAGCACTAATTACATTTTCACCAGATTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACAGCTCACCTGCTCTTAGCACTAATTACATTTTCACCAGATTCT  241

seq1  CCTGGTAATTATGGTGTTTCAGACTGAATTCTAATGGGCTCAGTGTTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAATTATGGTGTTTCAGACTGAATTCTAATGGGCTCAGTGTTTCT  291

seq1  GTGAATAAGCGCCCGTGTCTCTTTTCCTTAACACAGTGATTAGATATAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAAGCGCCCGTGTCTCTTTTCCTTAACACAGTGATTAGATATAAT  341

seq1  AGCTGCAGTTTATCAAATATCTTCTCACCTCTTAATAAGATTAAGTGATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGTTTATCAAATATCTTCTCACCTCTTAATAAGATTAAGTGATG  391

seq1  CTCATTTGGCGAAGTGGGGTGCTAAATCCTTCCCGGTGGTTGATCACAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGGCGAAGTGGGGTGCTAAATCCTTCCCGGTGGTTGATCACAAA  441

seq1  CCCAAACCGCCGCACATTTGTGTCTTGCTTTTCGAAGCATTTGTGATTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCGCCGCACATTTGTGTCTTGCTTTTCGAAGCATTTGTGATTTG  491

seq1  CAAGCTACTCTATGATTTTCTTTGGTAGAATTTGGGATTTGTGTCATTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTACTCTATGATTTTCTTTGGTAGAATTTGGGATTTGTGTCATTTT  541

seq1  TTTTCTCCAGACAAAATAAGTCATAATTATTCTTTTCATTAGAGTTGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCAGACAAAATAAGTCATAATTATTCTTTTCATTAGAGTTGAAA  591

seq1  ATAGGAAAGTAATCTGCATGACTGGACCACACAACATAACCCAGTGTCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAGTAATCTGCATGACTGGACCACACAACATAACCCAGTGTCCA  641

seq1  GCCTGATTCTTCTGGATGGAGACAGGTCATCTACAGAAATTAGATCTCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATTCTTCTGGATGGAGACAGGTCATCTACAGAAATTAGATCTCTG  691

seq1  TTATCTATCTACTTACCTTTCAAGTGGATAATTTATGTCTATCGACTATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATCTACTTACCTTTCAAGTGGATAATTTATGTCTATCGACTATC  741

seq1  TCCACCCAAACATCCTATATTGGCTTTGGATTTTTTACTACATCAGAGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCAAACATCCTATATTGGCTTTGGATTTTTTACTACATCAGAGTT  791

seq1  TAATTTGGGGATGATTAACAGTTTATACATATTAATTACTTTGGTTTTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGGGATGATTAACAGTTTATACATATTAATTACTTTGGTTTTCC  841

seq1  TATTGAGAATGCATCCCTTCAATGTTATACATCACATCTTTTATGTGACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGAATGCATCCCTTCAATGTTATACATCACATCTTTTATGTGACT  891

seq1  CAAGAAAGAATTCTAGCCTTTTTAGGGGAGGTAAGAGCTTTCATACCTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAATTCTAGCCTTTTTAGGGGAGGTAAGAGCTTTCATACCTGG  941

seq1  AACACAGAACCTCACCCTTGTGTGCCTAGGTAAGGGCTATAATACTGAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAACCTCACCCTTGTGTGCCTAGGTAAGGGCTATAATACTGAAC  991

seq1  CACTCTAAGTCCCTCTGATCCTGTTTGTACGGGTCCTACACATCTGTAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAAGTCCCTCTGATCCTGTTTGTACGGGTCCTACACATCTGTAGT  1041

seq1  TAGGCTGAGTTCTATGCAGCACACACAGTATCCGCTCCTGGAACAGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGAGTTCTATGCAGCACACACAGTATCCGCTCCTGGAACAGAATT  1091

seq1  C  1099
      |
seq2  C  1092


| Home | SequenceCutter | Blast | Download |