BAC Information

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BAC

Clone NameB6Ng01-191G09
Chromosome13 (Build37)
Map Location 34,184,317 - 34,347,742
singlet/doubletdoublet
Overlap geneLOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik
Upstream geneSerpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a
Downstream geneLOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191G09.bB6Ng01-191G09.g
ACCGA014899GA014900
length1,1561,171
definitionB6Ng01-191G09.b B6Ng01-191G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,184,317 - 34,185,479)(34,346,584 - 34,347,742)
sequence
gaattcaggaaaacctaaatctttgttcctgggccatggtcactcagaat
ggctccagaataagctcttcaagatgagagctgtgttttggtttggtttt
tgttttttatgccaaaactagaaaaacaaatactaaatctcagtgagatc
atacaatccagacttgaggttttcgaggagtgaaagtctcttaagggagg
gtttaagagacaggttgcaattcagtagagtcccctgtttgtagtctgga
tacctgctgcacaggtccatgaacagggtctatgggaacacacagcaatc
acctctgggagcataaacacatgtatccttcaggaagtcaggattgtgtc
ctgacaattgctaagaactaaccatctggcaatctcagtggctttggtaa
tgttctctatcattttccaaaggagagcatgggaagagtagaaatcctgg
caagcttatgggatgacctgggcagtgggcttagacactagcaatccacc
cacagcctactacagcttagccttttcagatgctaccaatcccagaattt
cctatgttgtgccctcttgaaggctttggtgggaagagttgcaacctttt
cctatgctatggttttttgcatgtaatatctttttgtggactgtttgaat
tgtctagtgcctgggaaaaactcaagtcagagggaaaagaattattacaa
taaggaaagaagacagcatatttaaataattggtggatgttaatatgatt
attgaaattaggggacctagagacattgtaaagcattgactgaacagcta
ggcacctggagtatcctcaagtagacatataagatttgaccgtgacacaa
cagattcagagatttcaatctttttttttttttttttttggtatttcgag
acagggtttctctgtatagctctggctgtcctggaactcactttgtagac
caggctggcctcgaactcagaaatccgctgcctctgccttccgagtgctg
ggattaaggcgtgcgccaccacgcccagctcaatcaatctttttagtgca
tcttcttataaattgaataagcatggtcagtaggattggctccaccaagt
tacgggttacttacacaacttgcattgaattcattccctcgaatccacat
gatagg
gaattcagaagttaaggcccacatgctaactcattggatagaaaggaaaa
ctgcaccttctgtggttgaagtgacttccttatgctagttgataagaaaa
acaatccttcttctgtagcaacagccacatgcttttacaaaaaagaggtg
caggagaagaaaggtgtctggatagttactagcagactttctgaggctgt
gaagagtcctccagccaactctttgtactgggggctttagagtactcgac
cttgtttaaggtaaagggatgtttgtttagcaaaagcaatggtaggagtg
cccttgacactgaaatgttgctgggattggaggctctggaatgctatgtg
ggcaccacagccatgtggactttctctccggtgcctgctttgggtcttgc
ttcctctttcaggatatgcagcctggcttgcttacactaacagatggcct
gtgcactccagtctgggtccaggagctgacacttctgacagaactaactc
tgtgtatcccagtgaccatgaacttccctctgcaggtgtcacttccttct
ttgtaatggcgatagtacctgatatctttatttataggttgtgagggctt
ctgaggttaagcatctatctacatgtgctgtgaaggtcctgggtgtgaat
tgcacctgattatagatgcttttttgagatcttgggcagatttcaaaacc
agagggccaaacaagtccatccttacttcagagcccatgacactgaggac
agaatagtcacaacagagtgcttcaggcataggaagtccagctccaagac
aaacacctctgtgcctcaccccgaagggttgcccatgatggagaagccag
ttagaatggcacacaggccaagtgtagggtcaacttcagtttacagaggt
aaatgaggaagtgcaaggctgccaaccccctggggtgattttccccttcc
ctggcgaaggtcactgcctcttctgacagggctgttccccactagcctag
cagacactgaggctgccacttataattacttgtcattatgaatccaattc
tgacagcagctgtgtaccttctctgcctgtttcctttgagtgtttctggc
gcgcagtctcatgagtcgcttgccagaatgctgtgtttcaaggaaagcac
tctctgaagaaagctgtgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_34184317_34185479
seq2: B6Ng01-191G09.b_45_1200

seq1  GAATTCAGGAAAACCTAAATCTTTGTTCCTGGGCCATGGTCACTCAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAAACCTAAATCTTTGTTCCTGGGCCATGGTCACTCAGAAT  50

seq1  GGCTCCAGAATAAGCTCTTCAAGATGAGAGCTGTGTTTTGGTTTGGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAGAATAAGCTCTTCAAGATGAGAGCTGTGTTTTGGTTTGGTTTT  100

seq1  TGTTTTTTATGCCAAAACTAGAAAAACAAATACTAAATCTCAGTGAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTATGCCAAAACTAGAAAAACAAATACTAAATCTCAGTGAGATC  150

seq1  ATACAATCCAGACTTGAGGTTTTCGAGGAGTGAAAGTCTCTTAAGGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATCCAGACTTGAGGTTTTCGAGGAGTGAAAGTCTCTTAAGGGAGG  200

seq1  GTTTAAGAGACAGGTTGCAATTCAGTAGAGTCCCCTGTTTGTAGTCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGAGACAGGTTGCAATTCAGTAGAGTCCCCTGTTTGTAGTCTGGA  250

seq1  TACCTGCTGCACAGGTCCATGAACAGGGTCTATGGGAACACACAGCAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCTGCACAGGTCCATGAACAGGGTCTATGGGAACACACAGCAATC  300

seq1  ACCTCTGGGAGCATAAACACATGTATCCTTCAGGAAGTCAGGATTGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGGGAGCATAAACACATGTATCCTTCAGGAAGTCAGGATTGTGTC  350

seq1  CTGACAATTGCTAAGAACTAACCATCTGGCAATCTCAGTGGCTTTGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATTGCTAAGAACTAACCATCTGGCAATCTCAGTGGCTTTGGTAA  400

seq1  TGTTCTCTATCATTTTCCAAAGGAGAGCATGGGAAGAGTAGAAATCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTATCATTTTCCAAAGGAGAGCATGGGAAGAGTAGAAATCCTGG  450

seq1  CAAGCTTATGGGATGACCTGGGCAGTGGGCTTAGACACTAGCAATCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTATGGGATGACCTGGGCAGTGGGCTTAGACACTAGCAATCCACC  500

seq1  CACAGCCTACTACAGCTTAGCCTTTTCAGATGCTACCAATCCCAGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTACTACAGCTTAGCCTTTTCAGATGCTACCAATCCCAGAATTT  550

seq1  CCTATGTTGTGCCCTCTTGAAGGCTTTGGTGGGAAGAGTTGCAACCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTTGTGCCCTCTTGAAGGCTTTGGTGGGAAGAGTTGCAACCTTTT  600

seq1  CCTATGCTATGGTTTTTTGCATGTAATATCTTTTTGTGGACTGTTTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCTATGGTTTTTTGCATGTAATATCTTTTTGTGGACTGTTTGAAT  650

seq1  TGTCTAGTGCCTGGGAAAAACTCAAGTCAGAGGGAAAAGAATTATTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGTGCCTGGGAAAAACTCAAGTCAGAGGGAAAAGAATTATTACAA  700

seq1  TAAGGAAAGAAGACAGCATATTTAAATAATTGGTGGATGTTAATATGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAGAAGACAGCATATTTAAATAATTGGTGGATGTTAATATGATT  750

seq1  ATTGAAATTAGGGGACCTAGAGACATTGTAAAGCATTGACTGAACAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATTAGGGGACCTAGAGACATTGTAAAGCATTGACTGAACAGCTA  800

seq1  GGCACCTGGAGTATCCTCAAGTAGACATATAAGATTTGACCGTGACACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTGGAGTATCCTCAAGTAGACATATAAGATTTGACCGTGACACAA  850

seq1  CAGATTCAGAGATTTCAATCTTTTTTTTTTTTTTTTTTTGGTATTTCGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCAGAGATTTCAATCTTTTTTTTTTTTTTTTTTTGGTATTTCGAG  900

seq1  ACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGTAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGTAGAC  950

seq1  CAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCT  1000
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  CAGGCTGGCCTCGAACTCAGAAATCCG-CTGCCTCTGCCTTCCGAGTGCT  999

seq1  GGGATTAAAGGCGTGCGCCACCACGCCCAGCTCAATC-ATCTTTTTAGTG  1049
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGATT-AAGGCGTGCGCCACCACGCCCAGCTCAATCAATCTTTTTAGTG  1048

seq1  CATC-TCTTATAAATATGAATAGGCATGGGTCAGTAAGATT-GCT-CACC  1096
      |||| |||||||||| |||||| |||| |||||||| |||| ||| ||||
seq2  CATCTTCTTATAAAT-TGAATAAGCAT-GGTCAGTAGGATTGGCTCCACC  1096

seq1  AAG-TACGGGTACCTTTACCACCAAACCTGGCCAATGGAATTCAATCCCT  1145
      ||| |||||||  |||    ||  ||| ||    || ||||||| |||||
seq2  AAGTTACGGGTTACTT----ACACAACTTG---CATTGAATTCATTCCCT  1139

seq1  CAGATCCCACATGATAGG  1163
      | ||  ||||||||||||
seq2  C-GAATCCACATGATAGG  1156

seq1: chr13_34346584_34347742
seq2: B6Ng01-191G09.g_66_1236 (reverse)

seq1  AATCACAGGCTTTCTTC--AGAGTGCCTTCC-TGAAACACAGCATCCTG-  46
      ||||||| |||||||||  ||||||| |||| ||||||||||||| ||| 
seq2  AATCACA-GCTTTCTTCAGAGAGTGCTTTCCTTGAAACACAGCATTCTGG  49

seq1  -CAGCGACTCA-ATGACTGCGGCCGCCAGAAACACTCAAAAGGAAACAGC  94
        |||||||||   |||||||  |||||||||||||| ||||||||||| 
seq2  CAAGCGACTCATGAGACTGCG--CGCCAGAAACACTC-AAAGGAAACAGG  96

seq1  CAGAGA--GTACACAGCTGCTGTCAGAATTGGA-TCAT-ATGAC-AGT-A  138
      ||||||  ||||||||||||||||||||||||| |||| ||||| ||| |
seq2  CAGAGAAGGTACACAGCTGCTGTCAGAATTGGATTCATAATGACAAGTAA  146

seq1  TTATAAGT-GCAGCCTCAGTGTCTGCTAGGCTAGT-GAGAACAGCCCTGT  186
      |||||||| |||||||||||||||||||||||||| | ||||||||||||
seq2  TTATAAGTGGCAGCCTCAGTGTCTGCTAGGCTAGTGGGGAACAGCCCTGT  196

seq1  CAG-AGAGGCAGTGACCTTCGCCCAGGGAAGGGG-AAATCACCCCAGGGG  234
      ||| ||||||||||||||||| |||||||||||| |||||||||||||||
seq2  CAGAAGAGGCAGTGACCTTCG-CCAGGGAAGGGGAAAATCACCCCAGGGG  245

seq1  GTTGGCAGCCTTGCACTTCCTCATTTACCTCTGTAAACTG-AGTTGACCC  283
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTGGCAGCCTTGCACTTCCTCATTTACCTCTGTAAACTGAAGTTGACCC  295

seq1  TACACTTGGCCTGTGTGCCATTCTAACTGGCTTCTCCATCATGGGCAACC  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGGCCTGTGTGCCATTCTAACTGGCTTCTCCATCATGGGCAACC  345

seq1  CTTCGGGGTGAGGCACAGAGGTGTTTGTCTTGGAGCTGGACTTCCTATGC  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGGGTGAGGCACAGAGGTGTTTGTCTTGGAGCTGGACTTCCTATGC  395

seq1  CTGAAGCACTCTGTTGTGACTATTCTGTCCTCAGTGTCATGGGCTCTGAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCACTCTGTTGTGACTATTCTGTCCTCAGTGTCATGGGCTCTGAA  445

seq1  GTAAGGATGGACTTGTTTGGCCCTCTGGTTTTGAAATCTGCCCAAGATCT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGATGGACTTGTTTGGCCCTCTGGTTTTGAAATCTGCCCAAGATCT  495

seq1  CAAAAAAGCATCTATAATCAGGTGCAATTCACACCCAGGACCTTCACAGC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGCATCTATAATCAGGTGCAATTCACACCCAGGACCTTCACAGC  545

seq1  ACATGTAGATAGATGCTTAACCTCAGAAGCCCTCACAACCTATAAATAAA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAGATAGATGCTTAACCTCAGAAGCCCTCACAACCTATAAATAAA  595

seq1  GATATCAGGTACTATCGCCATTACAAAGAAGGAAGTGACACCTGCAGAGG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAGGTACTATCGCCATTACAAAGAAGGAAGTGACACCTGCAGAGG  645

seq1  GAAGTTCATGGTCACTGGGATACACAGAGTTAGTTCTGTCAGAAGTGTCA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCATGGTCACTGGGATACACAGAGTTAGTTCTGTCAGAAGTGTCA  695

seq1  GCTCCTGGACCCAGACTGGAGTGCACAGGCCATCTGTTAGTGTAAGCAAG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGACCCAGACTGGAGTGCACAGGCCATCTGTTAGTGTAAGCAAG  745

seq1  CCAGGCTGCATATCCTGAAAGAGGAAGCAAGACCCAAAGCAGGCACCGGA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGCATATCCTGAAAGAGGAAGCAAGACCCAAAGCAGGCACCGGA  795

seq1  GAGAAAGTCCACATGGCTGTGGTGCCCACATAGCATTCCAGAGCCTCCAA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTCCACATGGCTGTGGTGCCCACATAGCATTCCAGAGCCTCCAA  845

seq1  TCCCAGCAACATTTCAGTGTCAAGGGCACTCCTACCATTGCTTTTGCTAA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAACATTTCAGTGTCAAGGGCACTCCTACCATTGCTTTTGCTAA  895

seq1  ACAAACATCCCTTTACCTTAAACAAGGTCGAGTACTCTAAAGCCCCCAGT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATCCCTTTACCTTAAACAAGGTCGAGTACTCTAAAGCCCCCAGT  945

seq1  ACAAAGAGTTGGCTGGAGGACTCTTCACAGCCTCAGAAAGTCTGCTAGTA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGTTGGCTGGAGGACTCTTCACAGCCTCAGAAAGTCTGCTAGTA  995

seq1  ACTATCCAGACACCTTTCTTCTCCTGCACCTCTTTTTTGTAAAAGCATGT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCAGACACCTTTCTTCTCCTGCACCTCTTTTTTGTAAAAGCATGT  1045

seq1  GGCTGTTGCTACAGAAGAAGGATTGTTTTTCTTATCAACTAGCATAAGGA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTGCTACAGAAGAAGGATTGTTTTTCTTATCAACTAGCATAAGGA  1095

seq1  AGTCACTTCAACCACAGAAGGTGCAGTTTTCCTTTCTATCCAATGAGTTA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTCAACCACAGAAGGTGCAGTTTTCCTTTCTATCCAATGAGTTA  1145

seq1  GCATGTGGGCCTTAACTTCTGAATTC  1159
      ||||||||||||||||||||||||||
seq2  GCATGTGGGCCTTAACTTCTGAATTC  1171