BAC Information

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BAC

Clone NameB6Ng01-191I02
Chromosome4 (Build37)13 (Build37)
Map Location 134,804,911 - 134,805,426110,265,989 - 110,267,119
singlet/doubletsingletsinglet
Overlap geneClic4
Upstream geneGrrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3
Downstream geneLOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191I02.bB6Ng01-191I02.g
ACCGA014979GA014980
length1,0311,140
definitionB6Ng01-191I02.b B6Ng01-191I02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(134,804,911 - 134,805,426)(110,265,989 - 110,267,119)
sequence
gaattcacagtttcctaagtgctaggattacaggtgcacaccatcatggc
tttcactgtattgtgccccgccttgagcaaatgctacctactcttgaaat
atgctcagctactggatgaattttttttaataatagaaaaatttaaataa
cctaatgttcacattattgggtatatttaaacaccaaaaatgagtgcatg
gttccaaatatacacaatacaagttcacaatattgtctattaattgttac
aagtagaaggatcaaaatacagatttctcaaaaagcttaaaaagtcagca
ggtacatggacaaaaatgaaaaaaatttagtatccctaaccatcagggaa
tgtatattaagttcacaataacaagtgcataagaatgattatgaataatg
tgagctgggtggtggtggcacacacctttaatcctagcccttgagagaga
ggcaaagggatctctgagttcaaggtcagcctggtctatagagtacatcc
caagacatccagggctacacagagaaaaccctgtctcaaacaattaaaag
aaaaaaagaaaaggaaagatgtgggatgtaagggaaaaagaatctttgga
tcagcatcaccattcctgggaatcattaggaagtgtctctaaaacacaaa
ttaagcatctcacatgattcaacgttctaggcatacaggatgaaatcagt
gtgtagaagatccatatgcactcttttttaaacaatgtatttattttaca
tatgtgaatacattttcacagtcttcagatacaccagaagaaggcatcag
accccattacattaccatgtggttgctgggaattgaactcaggacctctg
gaagagcagtcagtgctcttaacctctgagccatctctccagcctgccat
acaactcttgatttagtacctcagtatttacaatagccaggttacagatt
atattgaaatgtcaatcaacagaagaatttaaaaatgcacacactgaagt
ggcacataggaggagacagaagaatggaatg
gaattcaaaaacatcaccatgccagagacctcatttgtctgagccctaaa
caaatgagtggaaggaaatgatcaaacacagctcacagttgcttgaaaat
ttttcaacaactggagatttcataggacaagggtcgcctttaagaagagc
ttgacgtgtcactgggggacaatccttgctttgccatttctatacttttc
tacaaatgcatttccctttgccccaaatgtttcatctttgtattctcctg
tcctctggggatgtctagaatagaaacccattagcccagatggctgagca
ccctttgctttccgtacattttcttcatcaaactaaagtactatgttgaa
cagagaaataaggccttgtggccccacatggctggtcttccttggtaaag
tgactggcctctggcttagatggatatggttgttccagcgtgtgctggtt
aggtttttgctccctccacacaagatagggccatttgggagtgtggaacg
ccaattgataaaatgctttcatcagattgacctgtaaacaaatttgtgag
gcattatcttgacaaatgattgatatgagagggcctggctcactctaggt
ggtgccaccctagggcagctggtcctgggttgtttaagaaagctatgagg
aaggaacctcctccgtggttactgtttcagtccttgccctgactgcctat
catgatggactatagctataaactatcaaaactgtagaatcctgtttcta
ttcataagaagaaccctttccctccccaagttgctcttggtcatggtgtt
aatcacagtgatagaaacctaactatgacataggtaagttaccaaaggca
atttcaatttgtgttctattgtatttcttccttaggagaaattagcatga
aggataaatgccaattgctctgggaaagttatcatagccccctattccaa
gtgcttttatttatgatggttctaatcttgcctccaatccgaccatgttt
tctgaatagtgtgtctgaggcactacgaataaaagccactagattgaaca
ttcttgctgccagccttggattaggtcactcctcttgacgtctgttcctt
cctcttataaattagatgaggacatgattttttataaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134804911_134805426
seq2: B6Ng01-191I02.b_874_1064

seq1  AGGACCTCTGGAAGAGCAGACAGTGCTCTTAACCACTGAGCCATCTCTCC  50
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  AGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCC  50

seq1  AGCC---------CCTCTT--TTTGGT---------TTTTCAAGA-CAGG  79
      ||||          |||||  ||| ||         ||| ||| | |  |
seq2  AGCCTGCCATACAACTCTTGATTTAGTACCTCAGTATTTACAATAGCCAG  100

seq1  GTTTCTCTGTGTAGACCTGGCTATCCTGGAACTCC--TCTATAGACCAGG  127
      ||| |       |||      |||  || ||   |  || | |||  || 
seq2  GTTAC-------AGA-----TTATATTGAAATGTCAATCAACAGA--AGA  136

seq1  CTGTCCTCAAACTCACAGAGATCTGCCTGCCTCTGCCTCTGCCTCTGCCT  177
       | |    |  | ||||  ||  || |                       
seq2  ATTTAAAAATGCACACACTGAAGTGGC-----------------------  163

seq1  CCAGAGCGCTGAGACTGCACACAGTGTCTCTCACAAGGAATGTCTGTTTT  227
       || || |  ||||| | | |             | ||||||        
seq2  ACATAG-GAGGAGACAGAAGA-------------ATGGAATG--------  191

seq1  GAAGCATACTGATCTTTCTACTTCACCACCTGTGTGAAACTAGAGACTTA  277
                                                        
seq2  --------------------------------------------------  191

seq1  ATCTCTCCGGTTCTCAGTTTTCTTCTCTGTAAAATGGGGGAAAACATGCA  327
                                                        
seq2  --------------------------------------------------  191

seq1  CTTTATGTTATAGGTATGTAACCAGTGAATAGATGAAAATCTCTAAACGT  377
                                                        
seq2  --------------------------------------------------  191

seq1  GGAATGTGATCAGTTAGAACACACTGAGACGCAGAGAGCATATGTATTCT  427
                                                        
seq2  --------------------------------------------------  191

seq1  ATGATCTATATGGAGAGGCTCATCCGAGTAAGAGGGAACAGCCTGAGATC  477
                                                        
seq2  --------------------------------------------------  191

seq1  AGAACACAGGACGATAGGTCACCACAGAAGAATGGAATG  516
                                             
seq2  ---------------------------------------  191

seq1: chr13_110265989_110267119
seq2: B6Ng01-191I02.g_66_1205

seq1  GAATTCAAAAACATCACCATGCCAGAGACCTCATTTGTCTGAGCCCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAACATCACCATGCCAGAGACCTCATTTGTCTGAGCCCTAAA  50

seq1  CAAATGAGTGGAAGGAAATGATCAAACACAGCTCACAGTTGCTTGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGTGGAAGGAAATGATCAAACACAGCTCACAGTTGCTTGAAAAT  100

seq1  TTTTCAACAACTGGAGATTTCATAGGACAAGGGTCGCCTTTAAGAAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACAACTGGAGATTTCATAGGACAAGGGTCGCCTTTAAGAAGAGC  150

seq1  TTGACGTGTCACTGGGGGACAATCCTTGCTTTGCCATTTCTATACTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGTGTCACTGGGGGACAATCCTTGCTTTGCCATTTCTATACTTTTC  200

seq1  TACAAATGCATTTCCCTTTGCCCCAAATGTTTCATCTTTGTATTCTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGCATTTCCCTTTGCCCCAAATGTTTCATCTTTGTATTCTCCTG  250

seq1  TCCTCTGGGGATGTCTAGAATAGAAACCCATTAGCCCAGATGGCTGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGGGATGTCTAGAATAGAAACCCATTAGCCCAGATGGCTGAGCA  300

seq1  CCCTTTGCTTTCCGTACATTTTCTTCATCAAACTAAAGTACTATGTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGCTTTCCGTACATTTTCTTCATCAAACTAAAGTACTATGTTGAA  350

seq1  CAGAGAAATAAGGCCTTGTGGCCCCACATGGCTGGTCTTCCTTGGTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATAAGGCCTTGTGGCCCCACATGGCTGGTCTTCCTTGGTAAAG  400

seq1  TGACTGGCCTCTGGCTTAGATGGATATGGTTGTTCCAGCGTGTGCTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCCTCTGGCTTAGATGGATATGGTTGTTCCAGCGTGTGCTGGTT  450

seq1  AGGTTTTTGCTCCCTCCACACAAGATAGGGCCATTTGGGAGTGTGGAACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTGCTCCCTCCACACAAGATAGGGCCATTTGGGAGTGTGGAACG  500

seq1  CCAATTGATAAAATGCTTTCATCAGATTGACCTGTAAACAAATTTGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGATAAAATGCTTTCATCAGATTGACCTGTAAACAAATTTGTGAG  550

seq1  GCATTATCTTGACAAATGATTGATATGAGAGGGCCTGGCTCACTCTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATCTTGACAAATGATTGATATGAGAGGGCCTGGCTCACTCTAGGT  600

seq1  GGTGCCACCCTAGGGCAGCTGGTCCTGGGTTGTTTAAGAAAGCTATGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCACCCTAGGGCAGCTGGTCCTGGGTTGTTTAAGAAAGCTATGAGG  650

seq1  AAGGAACCTCCTCCGTGGTTACTGTTTCAGTCCTTGCCCTGACTGCCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCTCCTCCGTGGTTACTGTTTCAGTCCTTGCCCTGACTGCCTAT  700

seq1  CATGATGGACTATAGCTATAAACTATCAAAACTGTAGAATCCTGTTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGGACTATAGCTATAAACTATCAAAACTGTAGAATCCTGTTTCTA  750

seq1  TTCATAAGAAGAACCC-TTCCCTCCCCAAGTTGCTCTTGGTCATGGTGTT  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCATAAGAAGAACCCTTTCCCTCCCCAAGTTGCTCTTGGTCATGGTGTT  800

seq1  AATCACAGTGATAGAAACCTAACTATGACATAGGTAAGTTACCAAAGGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGTGATAGAAACCTAACTATGACATAGGTAAGTTACCAAAGGCA  850

seq1  ATTTCAATTTGTGTTCTATTGTATTTCTTCCTTAGGAGAAA-TAGCATGA  898
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTTCAATTTGTGTTCTATTGTATTTCTTCCTTAGGAGAAATTAGCATGA  900

seq1  AGGATAAATGCCAATTGCTCTGGG-AAGTTATCATAG-CCCCTATTCCAA  946
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  AGGATAAATGCCAATTGCTCTGGGAAAGTTATCATAGCCCCCTATTCCAA  950

seq1  GTGCTTTTATTTATGAT-GTTCTAATCTTGCCCTCAATCCGACCATGTTT  995
      ||||||||||||||||| ||||||||||||||  ||||||||||||||||
seq2  GTGCTTTTATTTATGATGGTTCTAATCTTGCCTCCAATCCGACCATGTTT  1000

seq1  CTTGATAGGTGTGTCTGAAGGCACTACGA--TAAAGCACTTAGATTTGAA  1043
        |||   ||||||||| |||||||||||   |||||   |||| |||||
seq2  TCTGAATAGTGTGTCTG-AGGCACTACGAATAAAAGCCACTAGA-TTGAA  1048

seq1  CCATC-TGCTG-CAG-CTTTGAATAGGTCAACTCTC-TGACGGTCTGTTT  1089
      |  || ||||| ||| ||| || |||||||   ||| |||| ||||||| 
seq2  CATTCTTGCTGCCAGCCTTGGATTAGGTCACTCCTCTTGAC-GTCTGTTC  1097

seq1  CCTTCTC-TATAAAATAGAGTGAGGACATGA-TTTTTATAAGGT  1131
      | | ||| |||||| |||| ||||||||||| ||||||||||||
seq2  CTTCCTCTTATAAATTAGA-TGAGGACATGATTTTTTATAAGGT  1140