BAC Information

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BAC

Clone NameB6Ng01-192D19
Chromosome13 (Build37)
Map Location 54,726,416 - 54,827,298
singlet/doubletdoublet
Overlap geneUbxd8, Rn4.5s-ps3, Rnf44, BC040758
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb
Downstream geneGprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192D19.bB6Ng01-192D19.g
ACCGA015526GA015527
length9271,113
definitionB6Ng01-192D19.b B6Ng01-192D19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,826,390 - 54,827,298)(54,726,416 - 54,727,519)
sequence
gaattcataagactggttgaagacaggcaggttgtcattgatgtcctaaa
aggaaaggcaggtctgagtgctagagacactagtagccccaggttcatcc
tccccagagccatctgagaacccagaaatatctctacagacagagccatc
gactccgcgtccctcggacaacactgaccactttccagatgtgcagacaa
ccctccaaaaaaaaaaaaaaaaaaaaaaaaccagagagtgctccttctgt
tagcctgacctcagcctagaactactgcaagtctattttccagaactgtt
tctgggtctctgtctgtgaccccatctagcttagcctgaggtcccatctc
tcagccccgtgacaccagctcagtgctcagtctgagctggactctgatgc
tttctgcccttgctcacgagcacaactagaaccctgtcttccatgttctc
ctcagtattgtcctgtgcctggggcatgccctgaataacccagccctccc
ttatctgtgggcatacatacatgctttggtggtcaggtttgtctatgtaa
ccataggacagagacctgggaacagaattctagcccttcagtgggtatac
catccctcttcctcctcctccgcctcctcctcctcctctgcctcctcctc
cttctcctcctccctttcctccctcctccctttctctttgtctttctttt
tctctccccactctctcctccttttgtctttttcaggggatagaggtcac
accaatgtaactcatctcctgagcctcctgacagttgacctcctttagac
aggcgcccactggctttcccttaacaagggtgcctgaatttctcgtaggt
catcctccctcttcacgggaagtgtctaagaacgcttgccctgcctctac
cgtggactctgggcttcttggggcttc
gaattctctaaggcatactaatcgtgtttctcagtccatttgatgtttcc
aagctccttttgtgtgtatgtgtaactcatggctctggcttgctttggaa
ccagatgagtagaataatgtagacattatgttttgagctatttctactgg
aaaacaataggtgtatagatttaaagaagagctgatgtaagtatgtggaa
agttacttttattggaatcagtgtccctgaatttccaaatatgtgtagat
ttctcccatgctttggttcactgcctctgggctggtggtttaccaccatg
gcaggaatggcatggtcagagagaaaggagcagatgtcctatgttccata
ggaggaaatgacctctttctgcttgcacagaaataagacatttacccctt
tctttgtttagttaaaaatgtattgtatttacttaaattgtgagggtctg
gggcacacatggcatgacacatacatcacattcaaataaacttgtgagat
gaggcctgatccttctgagcagtgaacttgggtcatcaggctcctcggga
agcgccttcatccgctgagccatcttgtcattcctgttagttcatgagac
agaatttcgctgggtagcccatgtgggccaggctcacctcagctagcact
gtgggatagagatgacgggtgtgtaccgcctactcgggggaaaaaaaatg
tggcaagtagagcatgactcgcattctctttatttaaggtaaagcctgga
ccctgagctgtagaagcaaatttatgtcattttggggactagggttatga
gtacctgataattctcatttgtccgtttaaaaatatcacagtggtcgggg
taatgatagcacacacctttaatcccagcactcgggaggcagaggcaggt
ggatttctgaattcgagaccagcctggtcttacagagtgagttccaggac
agccagggctacacagagaaacccttgtctcgaaaaacaaaaaaataaaa
atcacattgatctgttgattctgatttttccactcattccttggcaagaa
agctactaggtgagtttattaagtcctgggtgggagttctttacaatgga
gggggtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54826390_54827298
seq2: B6Ng01-192D19.b_46_972 (reverse)

seq1  GAAGCCCAAAG-AGGCCAGAG-CCACGGTAGAGGCAGGGCAGGCG-TCTT  47
      ||||||| ||| || |||||| ||||||||||||||||||| ||| ||||
seq2  GAAGCCCCAAGAAGCCCAGAGTCCACGGTAGAGGCAGGGCAAGCGTTCTT  50

seq1  AGACAC-TCCCGTG-AGAGGGAGGATGACCT-CGAG-AATTCA-GCACCC  92
      |||||| ||||||| |||||||||||||||| |||| |||||| ||||||
seq2  AGACACTTCCCGTGAAGAGGGAGGATGACCTACGAGAAATTCAGGCACCC  100

seq1  TTGTTAAGGG-AAGCCAGT-GGCGCCTGTCT-AAGGA-GTC-ACTGTCAG  137
      |||||||||| |||||||| ||||||||||| ||||| ||| ||||||||
seq2  TTGTTAAGGGAAAGCCAGTGGGCGCCTGTCTAAAGGAGGTCAACTGTCAG  150

seq1  GA-GCTCAGGAGATGAGTTACA-TGGTGTGACCTCTAT-CCCTGAAAAAG  184
      || ||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  GAGGCTCAGGAGATGAGTTACATTGGTGTGACCTCTATCCCCTGAAAAAG  200

seq1  AC-AAAGGAGGAGAGAGTGGGGAGAG-AAAAGAAAGACAAAGAGAAAGGG  232
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAAAAGGAGGAGAGAGTGGGGAGAGAAAAAGAAAGACAAAGAGAAAGGG  250

seq1  AGGAGGGAGGAAAGGGAGGAGGAGAAGGAGGAGGAGGCAGAGGAGGAGGA  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGGAAAGGGAGGAGGAGAAGGAGGAGGAGGCAGAGGAGGAGGA  300

seq1  GGAGGCGGAGGAGGAGGAAGAGGGATGGTATACCCACTGAAGGGCTAGAA  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCGGAGGAGGAGGAAGAGGGATGGTATACCCACTGAAGGGCTAGAA  350

seq1  TTCTGTTCCCAGGTCTCTGTCCTATGGTTACATAGACAAACCTGACCACC  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCCCAGGTCTCTGTCCTATGGTTACATAGACAAACCTGACCACC  400

seq1  AAAGCATGTATGTATGCCCACAGATAAGGGAGGGCTGGGTTATTCAGGGC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGTATGTATGCCCACAGATAAGGGAGGGCTGGGTTATTCAGGGC  450

seq1  ATGCCCCAGGCACAGGACAATACTGAGGAGAACATGGAAGACAGGGTTCT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCAGGCACAGGACAATACTGAGGAGAACATGGAAGACAGGGTTCT  500

seq1  AGTTGTGCTCGTGAGCAAGGGCAGAAAGCATCAGAGTCCAGCTCAGACTG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGCTCGTGAGCAAGGGCAGAAAGCATCAGAGTCCAGCTCAGACTG  550

seq1  AGCACTGAGCTGGTGTCACGGGGCTGAGAGATGGGACCTCAGGCTAAGCT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGCTGGTGTCACGGGGCTGAGAGATGGGACCTCAGGCTAAGCT  600

seq1  AGATGGGGTCACAGACAGAGACCCAGAAACAGTTCTGGAAAATAGACTTG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGTCACAGACAGAGACCCAGAAACAGTTCTGGAAAATAGACTTG  650

seq1  CAGTAGTTCTAGGCTGAGGTCAGGCTAACAGAAGGAGCACTCTCTGGTTT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTCTAGGCTGAGGTCAGGCTAACAGAAGGAGCACTCTCTGGTTT  700

seq1  TTTTTTTTTTTTTTTTTTTTTGGAGGGTTGTCTGCACATCTGGAAAGTGG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTGGAGGGTTGTCTGCACATCTGGAAAGTGG  750

seq1  TCAGTGTTGTCCGAGGGACGCGGAGTCGATGGCTCTGTCTGTAGAGATAT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTGTCCGAGGGACGCGGAGTCGATGGCTCTGTCTGTAGAGATAT  800

seq1  TTCTGGGTTCTCAGATGGCTCTGGGGAGGATGAACCTGGGGCTACTAGTG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTTCTCAGATGGCTCTGGGGAGGATGAACCTGGGGCTACTAGTG  850

seq1  TCTCTAGCACTCAGACCTGCCTTTCCTTTTAGGACATCAATGACAACCTG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGCACTCAGACCTGCCTTTCCTTTTAGGACATCAATGACAACCTG  900

seq1  CCTGTCTTCAACCAGTCTTATGAATTC  909
      |||||||||||||||||||||||||||
seq2  CCTGTCTTCAACCAGTCTTATGAATTC  927

seq1: chr13_54726416_54727519
seq2: B6Ng01-192D19.g_64_1176

seq1  GAATTCTCTAAGGCATACTAATCGTGTTTCTCAGTCCATTTGATGTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGGCATACTAATCGTGTTTCTCAGTCCATTTGATGTTTCC  50

seq1  AAGCTCCTTTTGTGTGTATGTGTAACTCATGGCTCTGGCTTGCTTTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTTTTGTGTGTATGTGTAACTCATGGCTCTGGCTTGCTTTGGAA  100

seq1  CCAGATGAGTAGAATAATGTAGACATTATGTTTTGAGCTATTTCTACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGAGTAGAATAATGTAGACATTATGTTTTGAGCTATTTCTACTGG  150

seq1  AAAACAATAGGTGTATAGATTTAAAGAAGAGCTGATGTAAGTATGTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATAGGTGTATAGATTTAAAGAAGAGCTGATGTAAGTATGTGGAA  200

seq1  AGTTACTTTTATTGGAATCAGTGTCCCTGAATTTCCAAATATGTGTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTTATTGGAATCAGTGTCCCTGAATTTCCAAATATGTGTAGAT  250

seq1  TTCTCCCATGCTTTGGTTCACTGCCTCTGGGCTGGTGGTTTACCACCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCATGCTTTGGTTCACTGCCTCTGGGCTGGTGGTTTACCACCATG  300

seq1  GCAGGAATGGCATGGTCAGAGAGAAAGGAGCAGATGTCCTATGTTCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATGGCATGGTCAGAGAGAAAGGAGCAGATGTCCTATGTTCCATA  350

seq1  GGAGGAAATGACCTCTTTCTGCTTGCACAGAAATAAGACATTTACCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAATGACCTCTTTCTGCTTGCACAGAAATAAGACATTTACCCCTT  400

seq1  TCTTTGTTTAGTTAAAAATGTATTGTATTTACTTAAATTGTGAGGGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTAGTTAAAAATGTATTGTATTTACTTAAATTGTGAGGGTCTG  450

seq1  GGGCACACATGGCATGACACATACATCACATTCAAATAAACTTGTGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACACATGGCATGACACATACATCACATTCAAATAAACTTGTGAGAT  500

seq1  GAGGCCTGATCCTTCTGAGCAGTGAACTTGGGTCATCAGGCTCCTCGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTGATCCTTCTGAGCAGTGAACTTGGGTCATCAGGCTCCTCGGGA  550

seq1  AGCGCCTTCATCCGCTGAGCCATCTTGTCATTCCTGTTAGTTCATGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCTTCATCCGCTGAGCCATCTTGTCATTCCTGTTAGTTCATGAGAC  600

seq1  AGAATTTCGCTGGGTAGCCCATGTGGGCCAGGCTCACCTCAGCTAGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCGCTGGGTAGCCCATGTGGGCCAGGCTCACCTCAGCTAGCACT  650

seq1  GTGGGATAGAGATGACGGGTGTGTACCGCCTACTCGGGGGAAAAAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATAGAGATGACGGGTGTGTACCGCCTACTCGGGGGAAAAAAAATG  700

seq1  TGGCAAGTAGAGCATGACTCGCATTCTCTTTATTTAAGGTAAAGCCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTAGAGCATGACTCGCATTCTCTTTATTTAAGGTAAAGCCTGGA  750

seq1  CCCTGAGCTGTAGAAGCAAATTTATGTCATTTTGGGGACTAGGGTTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCTGTAGAAGCAAATTTATGTCATTTTGGGGACTAGGGTTATGA  800

seq1  GTACCTGATAATTCTCATTTGTCCGTTTAAAAATATCACAGTGGTC-GGG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTACCTGATAATTCTCATTTGTCCGTTTAAAAATATCACAGTGGTCGGGG  850

seq1  TAATGATAGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATAGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGT  900

seq1  GGATTTCTGAATTCGAGACCAGCCTGGTC-TACAGAGTGAGTTCCAGGAC  948
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGATTTCTGAATTCGAGACCAGCCTGGTCTTACAGAGTGAGTTCCAGGAC  950

seq1  AGCCAGGGCTACACAGAGAAACCC-TGTCTCGAAAAAC-AAAAAATAAAA  996
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  AGCCAGGGCTACACAGAGAAACCCTTGTCTCGAAAAACAAAAAAATAAAA  1000

seq1  ATCACATTGATCTGTTTGATTTCTGATTTTTCCACCTCA-TCCTGGCAAA  1045
      |||||||||||||| |||| |||||||||||||| |||| |||| |  ||
seq2  ATCACATTGATCTG-TTGA-TTCTGATTTTTCCA-CTCATTCCTTGGCAA  1047

seq1  GAAAGCTACTA-GTGAGTTTTATAAGTCTTGGGT--GAGTTC-TTAC-AT  1090
      ||||||||||| ||||||||  |||||| |||||  |||||| |||| ||
seq2  GAAAGCTACTAGGTGAGTTTATTAAGTCCTGGGTGGGAGTTCTTTACAAT  1097

seq1  TGAGGGTGTGTGTG--  1104
       ||||| |||||||  
seq2  GGAGGGGGTGTGTGTG  1113