BAC Information

Click to search

BAC

Clone NameB6Ng01-193C16
Chromosome13 (Build37)
Map Location 29,018,396 - 29,019,492
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik
Downstream geneSox4, LOC100041135, Cdkal1, E2f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193C16.bB6Ng01-193C16.g
ACCGA016215GA016216
length8061,117
definitionB6Ng01-193C16.b B6Ng01-193C16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccactctgtggatgtaaactgtctcccttgggctcctgtgcttaa
acactttgtctctagatgctggctgtggttttagaggctgtgagatcctt
aggaagtagaaccttcctggaagaagtgggccactttgaggtacatttgc
agcctggctgtacttcctggcccactgagatgtgagcaagcagctttctg
ttcccactgccacctcctaccagctcatctcattgcatcacttcttcatt
tggtggactgtactctcatactcaaggcaaaataaaccctccctttctta
aggtgtttcttactaggtgatgggtcacactgatacagagtgagcacata
cagtgagatgatacacgtgtgagtataccccctgaggatgcctctagagg
ggagtcagttggtggggagttgtggagtgattccatgctgatgatagatg
acactgtcccatagtttaggaatccagaaacaaacaaacaaacaaaaagg
tgtaggagaaagcccattaagtaccagctttcttcttgctcctgctctct
gacaaccatgacaccaagggcttaccatcctcctcgccatgatgaaatga
accatctgaaggcatttactaaaataaatccttatatcttacattgtttt
ttaaaggtctcgtgtcacagaagcatgaaaaatagccaatatagaaaatc
agttgccaagaaagggggtagggtgggggtcattgccatgacttaagtac
caccatgtggtacctcttaggccttcagaatctgaaaggtggaggagttt
ggttgt
gaattctccattcaaagaaggacatgaagaacagaaagagaaaaatacgc
ctttctttttcttcctctaaatttgccagccttatttctgtctcctaagg
cagctccttaagtagaatgttctatgcacacatgtacacaactctagaca
aggaaggagtgtacaggaagcaaaagagcatagaagtctcctttacgctc
aatggtaagtgaagaaggcaggcaagcaggcagctgtgaaggaagggttt
cactatgcggagttccagggctgcatgagaggcagcaggggcaagagagg
gtggaaagacctttcatgtgttctaaatagatccttcaggagacagtatg
gtgaatgaacaggagcagaacggtactggacctctgagtgtgacccctaa
cctcggaggtggggacaggagttcaaggtaagcaacataggtatgcataa
cgccttctcaaacaaaggctgtctgccacagcatcttagacaggaatgcc
caggggctcctactttagtaggagttcaaggaactaaagaagaaacaatg
tcatgaatctgtcacttggtggcacagagagctgagggacagtctagaat
ggccccttatcataacctaccctgtgaattaacaacggtatcctctatca
aaagagggaaaccagagctagcaagcaatgaggcttggtggtagagtgtg
ggtctaacatgagtgaaacccaaagtttaatcatcagggccattaagaaa
ataaaaaaaaaaagtgtgcgggtgtattagcatggcctggcagcctggag
gagtttgttttgggtttgtgagtttgggatccacttgaaatgtctgaaaa
gccctgctagttctagtgttccaagtaggagctgtggacactctgctgta
gatgacaggagtctaaaggctcctgcatcatttttaaaaacattgcaagt
gaatgagcattacccttagctgcatgctcttcctcatggaagggtggttg
agaaagaagaagaaccgaagggtgcttgatattccaggagcggcttgtca
gcgagtgccaagaagaatgcaggaataatagcagatgcgctctaggaagc
tgagccattccagtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29018396_29019492
seq2: B6Ng01-193C16.g_63_1179

seq1  GAATTCTCCATTCAAAGAAGGACATGAAGAACAGAAAGAGAAAAATACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTCAAAGAAGGACATGAAGAACAGAAAGAGAAAAATACGC  50

seq1  CTTTCTTTTTCTTCCTCTAAATTTGCCAGCCTTATTTCTGTCTCCTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTCTTCCTCTAAATTTGCCAGCCTTATTTCTGTCTCCTAAGG  100

seq1  CAGCTCCTTAAGTAGAATGTTCTATGCACACATGTACACAACTCTAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTTAAGTAGAATGTTCTATGCACACATGTACACAACTCTAGACA  150

seq1  AGGAAGGAGTGTACAGGAAGCAAAAGAGCATAGAAGTCTCCTTTACGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAGTGTACAGGAAGCAAAAGAGCATAGAAGTCTCCTTTACGCTC  200

seq1  AATGGTAAGTGAAGAAGGCAGGCAAGCAGGCAGCTGTGAAGGAAGGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAAGTGAAGAAGGCAGGCAAGCAGGCAGCTGTGAAGGAAGGGTTT  250

seq1  CACTATGCGGAGTTCCAGGGCTGCATGAGAGGCAGCAGGGGCAAGAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGCGGAGTTCCAGGGCTGCATGAGAGGCAGCAGGGGCAAGAGAGG  300

seq1  GTGGAAAGACCTTTCATGTGTTCTAAATAGATCCTTCAGGAGACAGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGACCTTTCATGTGTTCTAAATAGATCCTTCAGGAGACAGTATG  350

seq1  GTGAATGAACAGGAGCAGAACGGTACTGGACCTCTGAGTGTGACCCCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGAACAGGAGCAGAACGGTACTGGACCTCTGAGTGTGACCCCTAA  400

seq1  CCTCGGAGGTGGGGACAGGAGTTCAAGGTAAGCAACATAGGTATGCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGAGGTGGGGACAGGAGTTCAAGGTAAGCAACATAGGTATGCATAA  450

seq1  CGCCTTCTCAAACAAAGGCTGTCTGCCACAGCATCTTAGACAGGAATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTCTCAAACAAAGGCTGTCTGCCACAGCATCTTAGACAGGAATGCC  500

seq1  CAGGGGCTCCTACTTTAGTAGGAGTTCAAGGAACTAAAGAAGAAACAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCTCCTACTTTAGTAGGAGTTCAAGGAACTAAAGAAGAAACAATG  550

seq1  TCATGAATCTGTCACTTGGTGGCACAGAGAGCTGAGGGACAGTCTAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATCTGTCACTTGGTGGCACAGAGAGCTGAGGGACAGTCTAGAAT  600

seq1  GGCCCCTTATCATAACCTACCCTGTGAATTAACAACGGTATCCTCTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTTATCATAACCTACCCTGTGAATTAACAACGGTATCCTCTATCA  650

seq1  AAAGAGGGAAACCAGAGCTAGCAAGCAATGAGGCTTGGTGGTAGAGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGAAACCAGAGCTAGCAAGCAATGAGGCTTGGTGGTAGAGTGTG  700

seq1  GGTCTAACATGAGTGAAACCCAAAGTTTAATCATCAGGGCCATTAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAACATGAGTGAAACCCAAAGTTTAATCATCAGGGCCATTAAGAAA  750

seq1  AT-AAAAAAAAAAGTGTGCGGGTGTATTAGCATGGCCTGGCAGCCTGGAG  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAAAAGTGTGCGGGTGTATTAGCATGGCCTGGCAGCCTGGAG  800

seq1  GAGTTTGTTTTGGGTTTGTGAGTTTGGGATCCACTTGAAATGTCTGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTTTTGGGTTTGTGAGTTTGGGATCCACTTGAAATGTCTGAAAA  850

seq1  GCCCTGCTAGTTCTAGTGTT-CAAGTAGGAGCTGTGGACACTCTGCTGTA  898
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCCCTGCTAGTTCTAGTGTTCCAAGTAGGAGCTGTGGACACTCTGCTGTA  900

seq1  GATGACAGGAGTCT-AAGGCTCCTGCATCATTTT--AAAACAATGCAAGT  945
      |||||||||||||| |||||||||||||||||||  |||||| |||||||
seq2  GATGACAGGAGTCTAAAGGCTCCTGCATCATTTTTAAAAACATTGCAAGT  950

seq1  GAATGAGCA-TACCC-TAGCTGCATGCTCTTCCTCATGGAA-GGTGGT--  990
      ||||||||| ||||| ||||||||||||||||||||||||| ||||||  
seq2  GAATGAGCATTACCCTTAGCTGCATGCTCTTCCTCATGGAAGGGTGGTTG  1000

seq1  ---GAGAAGAGAGAACCGAGGGGTGC-TGATATTTCAGGAGCGGC-TGTC  1035
          |||||| |||||||| |||||| ||||||| |||||||||| ||||
seq2  AGAAAGAAGA-AGAACCGAAGGGTGCTTGATATTCCAGGAGCGGCTTGTC  1049

seq1  AGCGAG-GCCAAG-AGAA-GCAGGAA-AAAAGCAAGAGCGCTC-AGGAAG  1080
      |||||| |||||| |||| ||||||| || ||||   |||||| ||||||
seq2  AGCGAGTGCCAAGAAGAATGCAGGAATAATAGCAGATGCGCTCTAGGAAG  1099

seq1  CTGAGCCATT-CAGTCAG  1097
      |||||||||| |||||||
seq2  CTGAGCCATTCCAGTCAG  1117