BAC Information

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BAC

Clone NameB6Ng01-193J04
Chromosome13 (Build37)
Map Location 16,846,344 - 17,016,614
singlet/doubletdoublet
Overlap gene5033411D12Rik
Upstream geneLOC665157, Inhba, LOC625181, LOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193J04.bB6Ng01-193J04.g
ACCGA016508GA016509
length932880
definitionB6Ng01-193J04.b B6Ng01-193J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,846,344 - 16,847,281)(17,016,061 - 17,016,614)
sequence
gaattcacagggtcagtagtaagcatatggcatgttgcaagtgcattgca
actgtttactgctttaatgtcctgcaggtttacaaagctccactttcact
cacctctaattttattctattaaattcattgaaaacatcctacgtgatgg
ttttggtttggcttatgtcaaagacttgttgctttatgttgaagcctgtg
ttgctatttggaaagaaccatcaggaacgtataaaaggtggcttctcgta
agaggattgagagagcaagctggagccattctctccttttctgtgcatcc
aagctctgtgaaggtaccattccctgctctgtcacttcccctatgaggat
gcactatacgtccacaaacccaaagaaacccactctcccaatcccagata
aaggcctcggaaatatgagaacaaaataaacatcattctttggagctgac
ttatacaggtagttttgtgttgtttctcgcactatagtgtgcctataaat
cactaaggaggcatttctgatttactaagtcagaagagagctctaggttt
ctatgtttctcacctcagtcttcacacacccccaactgggtggccatatt
cttacctgttttatggcgaagttgaatgttgaactcagaacttgggacaa
actaagcaagcatcttacctctgaactatgccctgaggctgcacttaaaa
caaagaaacaataactaaaactaatatcaaataatctaataaccaaaaac
aaaaacaaaaacaaaaactaaaaaccaaaacaaaaccaaccaaccttatc
taagggcaagagattaggataacaaccttctcaagcaaacaattgtttgc
ttcccggcttggcagtttaattttacaacaccactgctttttcttaagaa
gctaagatgatatttttggctaaggacagaga

gaattcaggcatttctgggaaaatgactgatggaaggatgtattaggttt
gttttctttttttcttttttcttgtttctgtgataaaatactagacaaag
gtaacttaagagagaaagtgttcatttgacttacagttcagggtacagtc
catcacagcctggcagtccaaatggcaggagcctgaagcagcctcctaca
gtgcaccacagtctggaagctgagatgtattagtggatgtctaccttact
tctccttttctaaaagggccaggatcctaaactatggaatggaaccactc
agcgggcaggttttcccatatcaaataacctgcttaaaacatagtcatat
gccacaaaggcatgttcagtggctaacctagacaatttcttacacatggg
tctagagacttgttcatttgttatagaccatgtccagttaataaaactat
ccatcaaccatcacagagggcaatttggtagtctttgtactaacaagtat
attatgaagaattaaaaatgggagaaaaatgggagaaaaagcttagaaca
ttgaatcaatgtcagataccaggttaagtactatacatatatgattttat
tctgaaatttgtaccaattgctaggaggcagctttattaatcatttctat
tttataagtgaagaataaaaaactactcttttccccccaaaattttcatc
atagatgatagatcattaattcaaatctcaacttttttttgacaccacac
ctctagttttaattcacaactacactgctttcttggaaagatgtggccca
tagaatttgcatgttttttaatatttcagatgctgggggggaagtttggg
ctttgtacacaatttcttaaaccctgtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_16846344_16847281
seq2: B6Ng01-193J04.b_47_978

seq1  GAATTCACAGGGTCAGTAGTAAGCATATGGCATGTTGCAAGTGCATTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGGTCAGTAGTAAGCATATGGCATGTTGCAAGTGCATTGCA  50

seq1  ACTGTTTACTGCTTTAATGTCCTGCAGGTTTACAAAGCTCCACTTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTACTGCTTTAATGTCCTGCAGGTTTACAAAGCTCCACTTTCACT  100

seq1  CACCTCTAATTTTATTCTATTAAATTCATTGAAAACATCCTACGTGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTAATTTTATTCTATTAAATTCATTGAAAACATCCTACGTGATGG  150

seq1  TTTTGGTTTGGCTTATGTCAAAGACTTGTTGCTTTATGTTGAAGCCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTGGCTTATGTCAAAGACTTGTTGCTTTATGTTGAAGCCTGTG  200

seq1  TTGCTATTTGGAAAGAACCATCAGGAACGTATAAAAGGTGGCTTCTCGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTTGGAAAGAACCATCAGGAACGTATAAAAGGTGGCTTCTCGTA  250

seq1  AGAGGATTGAGAGAGCAAGCTGGAGCCATTCTCTCCTTTTCTGTGCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTGAGAGAGCAAGCTGGAGCCATTCTCTCCTTTTCTGTGCATCC  300

seq1  AAGCTCTGTGAAGGTACCATTCCCTGCTCTGTCACTTCCCCTATGAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGTGAAGGTACCATTCCCTGCTCTGTCACTTCCCCTATGAGGAT  350

seq1  GCACTATACGTCCACAAACCCAAAGAAACCCACTCTCCCAATCCCAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATACGTCCACAAACCCAAAGAAACCCACTCTCCCAATCCCAGATA  400

seq1  AAGGCCTCGGAAATATGAGAACAAAATAAACATCATTCTTTGGAGCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTCGGAAATATGAGAACAAAATAAACATCATTCTTTGGAGCTGAC  450

seq1  TTATACAGGTAGTTTTGTGTTGTTTCTCGCACTATAGTGTGCCTATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAGGTAGTTTTGTGTTGTTTCTCGCACTATAGTGTGCCTATAAAT  500

seq1  CACTAAGGAGGCATTTCTGATTTACTAAGTCAGAAGAGAGCTCTAGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGGAGGCATTTCTGATTTACTAAGTCAGAAGAGAGCTCTAGGTTT  550

seq1  CTATGTTTCTCACCTCAGTCTTCACACACCCCCAACTGGGTGGCCATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTTCTCACCTCAGTCTTCACACACCCCCAACTGGGTGGCCATATT  600

seq1  CTTACCTGTTTTATGGCGAAGTTGAATGTTGAACTCAGAACTTGGGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTGTTTTATGGCGAAGTTGAATGTTGAACTCAGAACTTGGGACAA  650

seq1  ACTAAGCAAGCATCTTACCTCTGAACTATGCCCTGAGGCTGCACTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCAAGCATCTTACCTCTGAACTATGCCCTGAGGCTGCACTTAAAA  700

seq1  CAAAAGAAAACAAAAACAAAAAC-AAAAACAAA-AAACAAAAAACAAAAA  748
      ||||   |||||| ||| ||||| || | |||| || | || ||| ||||
seq2  CAAA--GAAACAATAACTAAAACTAATATCAAATAATCTAATAACCAAAA  748

seq1  ACAAAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAACCA  798
      |||||||   |||||||||||  ||||| ||||    | ||||| |||||
seq2  ACAAAAA--CAAAAACAAAAACTAAAAACCAAA----ACAAAACCAACCA  792

seq1  ACCTTATCTAAGGGCAAGAGAATAAGGATAACAACCTTCTCCAAGCAAAC  848
      |||||||||||||||||||| || |||||||||||||||| |||||||||
seq2  ACCTTATCTAAGGGCAAGAG-ATTAGGATAACAACCTTCT-CAAGCAAAC  840

seq1  AA-TGTTTGCTTCCCGGCTTTGCCAGTTT-ATTTTACCACCACACTGCTT  896
      || ||||||||||||||| ||| |||||| ||||||| ||  ||||||||
seq2  AATTGTTTGCTTCCCGGC-TTGGCAGTTTAATTTTACAACACCACTGCTT  889

seq1  TTTCCTTAAG-AGCTAAGATGATA-TTTTGGCTAAGGACAGAGA  938
      ||| |||||| ||||||||||||| |||||||||||||||||||
seq2  TTT-CTTAAGAAGCTAAGATGATATTTTTGGCTAAGGACAGAGA  932


seq1: chr13_17016061_17016614
seq2: B6Ng01-193J04.g_65_618 (reverse)

seq1  TCAATGTTCTAAGCTTTTTCTCCCATTTTTCTCCCATTTTTAATTCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTCTAAGCTTTTTCTCCCATTTTTCTCCCATTTTTAATTCTTCA  50

seq1  TAATATACTTGTTAGTACAAAGACTACCAAATTGCCCTCTGTGATGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACTTGTTAGTACAAAGACTACCAAATTGCCCTCTGTGATGGTTG  100

seq1  ATGGATAGTTTTATTAACTGGACATGGTCTATAACAAATGAACAAGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAGTTTTATTAACTGGACATGGTCTATAACAAATGAACAAGTCTC  150

seq1  TAGACCCATGTGTAAGAAATTGTCTAGGTTAGCCACTGAACATGCCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCATGTGTAAGAAATTGTCTAGGTTAGCCACTGAACATGCCTTTG  200

seq1  TGGCATATGACTATGTTTTAAGCAGGTTATTTGATATGGGAAAACCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATGACTATGTTTTAAGCAGGTTATTTGATATGGGAAAACCTGCC  250

seq1  CGCTGAGTGGTTCCATTCCATAGTTTAGGATCCTGGCCCTTTTAGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAGTGGTTCCATTCCATAGTTTAGGATCCTGGCCCTTTTAGAAAAG  300

seq1  GAGAAGTAAGGTAGACATCCACTAATACATCTCAGCTTCCAGACTGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTAAGGTAGACATCCACTAATACATCTCAGCTTCCAGACTGTGGT  350

seq1  GCACTGTAGGAGGCTGCTTCAGGCTCCTGCCATTTGGACTGCCAGGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTAGGAGGCTGCTTCAGGCTCCTGCCATTTGGACTGCCAGGCTGT  400

seq1  GATGGACTGTACCCTGAACTGTAAGTCAAATGAACACTTTCTCTCTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACTGTACCCTGAACTGTAAGTCAAATGAACACTTTCTCTCTTAAG  450

seq1  TTACCTTTGTCTAGTATTTTATCACAGAAACAAGAAAAAAGAAAAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTGTCTAGTATTTTATCACAGAAACAAGAAAAAAGAAAAAAAGA  500

seq1  AAACAAACCTAATACATCCTTCCATCAGTCATTTTCCCAGAAATGCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACCTAATACATCCTTCCATCAGTCATTTTCCCAGAAATGCCTGA  550

seq1  ATTC  554
      ||||
seq2  ATTC  554


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