BAC Information

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BAC

Clone NameB6Ng01-193K20
Chromosome13 (Build37)
Map Location 81,921,144 - 82,081,699
singlet/doubletdoublet
Overlap geneCetn3
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik
Downstream geneLOC238756, LOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193K20.bB6Ng01-193K20.g
ACCGA016581GA016582
length1,1671,168
definitionB6Ng01-193K20.b B6Ng01-193K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,921,144 - 81,922,333)(82,080,556 - 82,081,699)
sequence
gaattcaaagatctgcttacatgtctcttgggtgctgggattaaacatgt
gtagcaccatgcccagttgagttcttcaacatttttctactttggttttg
ggagtgctatcatttagctattactttttagctttatcccaatcctttac
ttgtccaaattcctatctacactctagcttaactcatgcatagccaatta
cacagcgtccttcgttcacatataagcttacatacagtatttgccgtttc
taattcctagccccagtttattgtatttataccgataagcactgcaggtt
agctcagtagtttccaagttttccacaataatacctcattttatgcatca
aatatttatggagcacctaagttccagatattttgtttggtacaaatact
cgtgtaaacagaaccctggccttgaagacagtcagtctcgctcgcagtct
gatgatctaagtaaactttaagaggcttggtgggcagtgaagataagacg
cacataaacactttatagcactagaaaatgagaagcagaagcaagcacac
atttccaatcgcacagaagaaaagggtggtttggctagtctcattgtaaa
tgacctaacaaaacagcaaaacgagaagcctaatccataatccagcctgc
cttaaaatcacttgggagatgtacgggggagaacgcttagcttggtcctc
actgaactaagaataaagaatgtcgcctttagatttaagtttctcaggtg
caccggccacctaaaattgtacatcttttcgcagacctggttccccaata
aactgctccctcgttctgagcaggctgcttgggctggccttttcccttcc
ctcggtcgacgccgtgcatgtcacgcgtggggcctcgccttgcctgcctg
agtctcgcgtggtgactctaatacgcgcgcaagggagtcgggaaagacct
ggccatccaggagccagactgacaaccaggccaaaaatgtgtacttgaat
gaacatgaatgctgacatgaaaaagaagagccagcgacgcttccgtccca
atagccgctgttgcaatttcagcatcgcgcccagaactgtctggtgggtg
gtcccgaagccgtgagtgtggccttgtgacggatcgtataagtccgagtg
acaattctctgtcggaa

gaattctcttttaccggataattagaatcctagaccctgggaatgtcaga
gctgtgaggcccattgttgaacatccttcactttatggatgtagaaatca
gaaacatggagttgctaagcaaattttccagaacttaatgactagaacgt
ggcaggtacgaggcaagaaccgtcttcttcagaatctcttctcaaactag
aaatgagaacagtcacccagagagctgtaagaaggtggctgggtccattt
ccaaagcccttggttctttttgtctaagataggactaaggaatttgtatt
tgtaacaagtttcaggtagtggtttccaaggtataatgtccttgatggca
ctgggactgtctgaatgtaagcatttttctgatggcactttttatgtgaa
caaagcaacctcatcccagagtcaccacattcctttagcatcttctcatc
agctctctgaaagggctggagtgacatccacggtgacagttgggaaggta
gggcactcatgtaagggactcctgaggagtcacagtcatcccaaacatca
gtgactcataacacagtccagctaagtgccacttacaaggaggtccgctg
cccttccccatgagttatcaatgcctacatcaatacaggagtttgagtcc
tttcccagtctctgaagtaaaatagcacttaatggtcctaaagaaccaaa
gtgcaagtcatcattgcttatgtcatcttagcaaatatgtcttaagacca
ggagaagacatctgtgtaagtgaacttgacctcacctgtgattgaggctc
tggctcacagcaggagtatatgtgagatggactcaacaggggcacacacc
agtttacatctacaaggtagagttcaaaaaaccttataataccacagtca
tatgagtggaaatctgatttcttccctttcttttttcttctggtttggag
gaatgaactgatgaggattaatatatacaccatacatatttatatatgtt
atgatgcataatcatatatacatggtattatataggagagaaaatattca
ttgttatgttttctatcaagtctagaaaataaatgaactgacttcgaaac
cgatttatttattcctgtgtgtcaaccctgatgtttttggtaattgtcac
ctattttattttcataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81921144_81922333
seq2: B6Ng01-193K20.b_49_1215

seq1  GAATTCAAAGATCTGCTTACATGTCTCTTGGGTGCTGGGATTAAACATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATCTGCTTACATGTCTCTTGGGTGCTGGGATTAAACATGT  50

seq1  GTAGCACCATGCCCAGTTGAGTTCTTCAACATTTTTCTACTTTGGTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACCATGCCCAGTTGAGTTCTTCAACATTTTTCTACTTTGGTTTTG  100

seq1  GGAGTGCTATCATTTAGCTATTACTTTTTAGCTTTATCCCAATCCTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCTATCATTTAGCTATTACTTTTTAGCTTTATCCCAATCCTTTAC  150

seq1  TTGTCCAAATTCCTATCTACACTCTAGCTTAACTCATGCATAGCCAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAAATTCCTATCTACACTCTAGCTTAACTCATGCATAGCCAATTA  200

seq1  CACAGCGTCCTTCGTTCACATATAAGCTTACATACAGTATTTGCCGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCGTCCTTCGTTCACATATAAGCTTACATACAGTATTTGCCGTTTC  250

seq1  TAATTCCTAGCCCCAGTTTATTGTATTTATACCGATAAGCACTGCAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTAGCCCCAGTTTATTGTATTTATACCGATAAGCACTGCAGGTT  300

seq1  AGCTCAGTAGTTTCCAAGTTTTCCACAATAATACCTCATTTTATGCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTAGTTTCCAAGTTTTCCACAATAATACCTCATTTTATGCATCA  350

seq1  AATATTTATGGAGCACCTAAGTTCCAGATATTTTGTTTGGTACAAATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATGGAGCACCTAAGTTCCAGATATTTTGTTTGGTACAAATACT  400

seq1  CGTGTAAACAGAACCCTGGCCTTGAAGACAGTCAGTCTCGCTCGCAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAAACAGAACCCTGGCCTTGAAGACAGTCAGTCTCGCTCGCAGTCT  450

seq1  GATGATCTAAGTAAACTTTAAGAGGCTTGGTGGGCAGTGAAGATAAGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTAAGTAAACTTTAAGAGGCTTGGTGGGCAGTGAAGATAAGACG  500

seq1  CACATAAACACTTTATAGCACTAGAAAATGAGAAGCAGAAGCAAGCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAACACTTTATAGCACTAGAAAATGAGAAGCAGAAGCAAGCACAC  550

seq1  ATTTCCAATCGCACAGAAGAAAAGGGTGGTTTGGCTAGTCTCATTGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAATCGCACAGAAGAAAAGGGTGGTTTGGCTAGTCTCATTGTAAA  600

seq1  TGACCTAACAAAACAGCAAAACGAGAAGCCTAATCCATAATCCAGCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAACAAAACAGCAAAACGAGAAGCCTAATCCATAATCCAGCCTGC  650

seq1  CTTAAAATCACTTGGGAGATGTACGGGGGAGAACGCTTAGCTTGGTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATCACTTGGGAGATGTACGGGGGAGAACGCTTAGCTTGGTCCTC  700

seq1  ACTGAACTAAGAATAAAGAATGTCGCCTTTAGATTTAAGTTTCTCAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTAAGAATAAAGAATGTCGCCTTTAGATTTAAGTTTCTCAGGTG  750

seq1  CACCGGCCACCTAAAATTGTACATCTTTTCGCAGACCTGGTTCCCCAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGCCACCTAAAATTGTACATCTTTTCGCAGACCTGGTTCCCCAATA  800

seq1  AACTGCTCCCTCGTTCTGAGCAGGCTGCTTGGGCTGGCCTTTTCCCTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCCCTCGTTCTGAGCAGGCTGCTTGGGCTGGCCTTTTCCCTTCC  850

seq1  CTCGGTCGACGCCGTGCATGTCACGCGTGGGGCCTCGCCTTGCCTGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTCGACGCCGTGCATGTCACGCGTGGGGCCTCGCCTTGCCTGCCTG  900

seq1  AGTCTCGCGTGGTGACTCTAATACGCGCGCAAGGGAGTCGGGAAAGAACC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGTCTCGCGTGGTGACTCTAATACGCGCGCAAGGGAGTCGGGAAAG-ACC  949

seq1  TGGCCAATCCAGGGAGCCAGACTGACAACCAGGGCCAAAAAATGTGTACT  1000
      ||||| ||||| |||||||||||||||||||||  | |||||||||||||
seq2  TGGCC-ATCCA-GGAGCCAGACTGACAACCAGG--CCAAAAATGTGTACT  995

seq1  TGATTG-ACATGAATGCTGACCAATGAAAAAAGAAGAG-CAGCGACGCTT  1048
      ||| || ||||||||||||||  ||| ||||||||||| |||||||||||
seq2  TGAATGAACATGAATGCTGAC--ATG-AAAAAGAAGAGCCAGCGACGCTT  1042

seq1  CCGCCCCAATAGGCCGGCTGTTGGCAATTTCAGCCAATCGCGCCCAGAAA  1098
      ||| ||||||||  | |||||| |||||||||||  ||||||||||||| 
seq2  CCGTCCCAATAG--CCGCTGTT-GCAATTTCAGC--ATCGCGCCCAGAA-  1086

seq1  CTTGTCTGGTGGGTGGTCCCCGAGGCGTGGAGGTTGGTGGCTGTTGAGCG  1148
        ||||||||||||||||||  || ||| |||  ||  | ||  ||| ||
seq2  -CTGTCTGGTGGGTGGTCCCGAAGCCGT-GAG--TGTGGCCTTGTGA-CG  1131

seq1  GTTCCCGTGGTA-AAGTCCCCGAGTGGAACATCTCTGTCGGAA  1190
      | ||     ||| ||||  |||||||  |  ||||||||||||
seq2  GATC-----GTATAAGT--CCGAGTGACAATTCTCTGTCGGAA  1167


seq1: chr13_82080556_82081699
seq2: B6Ng01-193K20.g_65_1232 (reverse)

seq1  TTTATGAAAAT-AAATAGGTGACAATATACAAAAACATCAGGGTTGACAC  49
      ||||||||||| ||||||||||||||   |||||||||||||||||||||
seq2  TTTATGAAAATAAAATAGGTGACAATTACCAAAAACATCAGGGTTGACAC  50

seq1  A----GATAATTAAATTCGTTTCGAAGTCAG-TCATTTATTTTCTAGAC-  93
      |     |||| |||||  ||||||||||||| ||||||||||||||||| 
seq2  ACAGGAATAAATAAATCGGTTTCGAAGTCAGTTCATTTATTTTCTAGACT  100

seq1  TGATAG-AAACATA--CATGA----TATCTCTCTCTATAT-ATA-CATGT  134
      |||||| |||||||   ||||    | |||||| |||||| ||| |||||
seq2  TGATAGAAAACATAACAATGAATATTTTCTCTC-CTATATAATACCATGT  149

seq1  ATATATGA-TATGCATCAT-ACATATATAAATATGTAT-GTGTATATATT  181
      |||||||| |||||||||| |||||||||||||||||| |||||||||||
seq2  ATATATGATTATGCATCATAACATATATAAATATGTATGGTGTATATATT  199

seq1  -ATCTTCATCAG-TCATT-CTCCAAACCAGAAG-AAAAAGAAAGGG-AGA  226
       ||| ||||||| ||||| |||||||||||||| |||||||||||| |||
seq2  AATCCTCATCAGTTCATTCCTCCAAACCAGAAGAAAAAAGAAAGGGAAGA  249

seq1  AATCAGA-TTCCACTCATATGACTGTGGTATTATAAGGTTTTTTGAACTC  275
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATTTCCACTCATATGACTGTGGTATTATAAGGTTTTTTGAACTC  299

seq1  TACCTTGTAGATGTAAACTGGTGTGTGCCCCTGTTGAGTCCATCTCACAT  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGTAGATGTAAACTGGTGTGTGCCCCTGTTGAGTCCATCTCACAT  349

seq1  ATACTCCTGCTGTGAGCCAGAGCCTCAATCACAGGTGAGGTCAAGTTCAC  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCTGCTGTGAGCCAGAGCCTCAATCACAGGTGAGGTCAAGTTCAC  399

seq1  TTACACAGATGTCTTCTCCTGGTCTTAAGACATATTTGCTAAGATGACAT  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGATGTCTTCTCCTGGTCTTAAGACATATTTGCTAAGATGACAT  449

seq1  AAGCAATGATGACTTGCACTTTGGTTCTTTAGGACCATTAAGTGCTATTT  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGATGACTTGCACTTTGGTTCTTTAGGACCATTAAGTGCTATTT  499

seq1  TACTTCAGAGACTGGGAAAGGACTCAAACTCCTGTATTGATGTAGGCATT  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGAGACTGGGAAAGGACTCAAACTCCTGTATTGATGTAGGCATT  549

seq1  GATAACTCATGGGGAAGGGCAGCGGACCTCCTTGTAAGTGGCACTTAGCT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTCATGGGGAAGGGCAGCGGACCTCCTTGTAAGTGGCACTTAGCT  599

seq1  GGACTGTGTTATGAGTCACTGATGTTTGGGATGACTGTGACTCCTCAGGA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTGTTATGAGTCACTGATGTTTGGGATGACTGTGACTCCTCAGGA  649

seq1  GTCCCTTACATGAGTGCCCTACCTTCCCAACTGTCACCGTGGATGTCACT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTACATGAGTGCCCTACCTTCCCAACTGTCACCGTGGATGTCACT  699

seq1  CCAGCCCTTTCAGAGAGCTGATGAGAAGATGCTAAAGGAATGTGGTGACT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTTTCAGAGAGCTGATGAGAAGATGCTAAAGGAATGTGGTGACT  749

seq1  CTGGGATGAGGTTGCTTTGTTCACATAAAAAGTGCCATCAGAAAAATGCT  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGAGGTTGCTTTGTTCACATAAAAAGTGCCATCAGAAAAATGCT  799

seq1  TACATTCAGACAGTCCCAGTGCCATCAAGGACATTATACCTTGGAAACCA  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCAGACAGTCCCAGTGCCATCAAGGACATTATACCTTGGAAACCA  849

seq1  CTACCTGAAACTTGTTACAAATACAAATTCCTTAGTCCTATCTTAGACAA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGAAACTTGTTACAAATACAAATTCCTTAGTCCTATCTTAGACAA  899

seq1  AAAGAACCAAGGGCTTTGGAAATGGACCCAGCCACCTTCTTACAGCTCTC  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCAAGGGCTTTGGAAATGGACCCAGCCACCTTCTTACAGCTCTC  949

seq1  TGGGTGACTGTTCTCATTTCTAGTTTGAGAAGAGATTCTGAAGAAGACGG  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGACTGTTCTCATTTCTAGTTTGAGAAGAGATTCTGAAGAAGACGG  999

seq1  TTCTTGCCTCGTACCTGCCACGTTCTAGTCATTAAGTTCTGGAAAATTTG  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCTCGTACCTGCCACGTTCTAGTCATTAAGTTCTGGAAAATTTG  1049

seq1  CTTAGCAACTCCATGTTTCTGATTTCTACATCCATAAAGTGAAGGATGTT  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAACTCCATGTTTCTGATTTCTACATCCATAAAGTGAAGGATGTT  1099

seq1  CAACAATGGGCCTCACAGCTCTGACATTCCCAGGGTCTAGGATTCTAATT  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGGGCCTCACAGCTCTGACATTCCCAGGGTCTAGGATTCTAATT  1149

seq1  ATCCGGTAAAAGAGAATTC  1144
      |||||||||||||||||||
seq2  ATCCGGTAAAAGAGAATTC  1168


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