BAC Information

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BAC

Clone NameB6Ng01-193M14
Chromosome13 (Build37)18 (Build37)
Map Location 62,404,941 - 62,405,44125,494,273 - 25,494,773
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962
Downstream geneLOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193M14.bB6Ng01-193M14.g
ACCGA016658GA016659
length496912
definitionB6Ng01-193M14.b B6Ng01-193M14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,404,941 - 62,405,441)(25,494,273 - 25,494,773)
sequence
actcggacaaccggattcttctacggaaagcattattgcttcatcagaag
gaagaccccgaacccggaaaattgagctgcttatatacccctccgtgtga
tgtgtcagcacctggtttgctgctcactcatcaccccactgctacgccct
gagatgggcagtgacttggcacaaatttactctagcacctgcacacatta
cttgtttaccagttaggcactgtggaagccagcgccatcttgtaatggcg
attgctcacggctttccacaaatgtgatctatatgggagagcctatgtat
gtcacaggcatcttcaaaagcataaaagaattcatactgtagagaaagcc
tatgaatgtatttaatattcatactcttaattatgaacatatttgtattg
gtaagaaactgtctgaatataaaccatgtggtttagttttatctcaacac
aaaaaatctcctaatgcagcatggagcacacactggagtaagacag
gaattctgtggactgtgtcttgtgtattctgtatagggattttttttttc
ctttttctttctttttggctaatatccagttttttttcttttaagattta
tttatttatatgtaagtacactgtagctatcctcagatactccacaagag
gacatcagatttcattacagatggttgtgagccaccatgtggttgctggg
atttgaacttgggaccttaggaagagcagtcggggctcttaaccactgag
ccatcacgccagccgctaatatccagttattaatgagtacataccattca
tgtccttttgggtgtgagtacataccatgcatgtccttttgggtgtgagt
tacctcactcagaatgatattttctagatccgtccatttgcctgcaaaac
tcaggatgtcctagttcttaatagctgagtagtattccattgtacataaa
tgaaccaccttttctgtatccattcttctgtcgtgggacatctaggttgt
ttccagcttctggctatcacaaataaggcaactatgaacatagtggaaca
cctgcccctttggcatagtggggggcatcttttgggtatattcccaagag
tgttatagctgggtcttcaggtagatctatttccaattttctgaggaacc
tccagattgatttccagagtggttgtaccagtttgccatctcaccagcaa
tggaggaatgttcctctttatccacgtcctctccaatatgtgttgtcacc
ttaggttttgatcttagccattctgactggtgtacagtgaaatctcaggt
ccttttgattggcacttctctgatcactaaggactatgaaacatttcttt
aggtgtttctcagccatttgagattcctcacttgtgaattctcagacagt
ggactgtggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62404941_62405441
seq2: B6Ng01-193M14.b_48_549 (reverse)

seq1  CTGTCTTACTCCAGTGTGTGCTCCTTGCTGCATTAGGAGA-TAAGTGTGC  49
      |||||||||||||||||||||||| ||||||||||||||| |   |||| 
seq2  CTGTCTTACTCCAGTGTGTGCTCCATGCTGCATTAGGAGATTTTTTGTGT  50

seq1  TGGGAT-AGGCTTTACCACATGGTTTATATTCAGACAGTTTCTTACCAAT  98
      || ||| |  ||  ||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAAACTAAACCACATGGTTTATATTCAGACAGTTTCTTACCAAT  100

seq1  ACAAATATGTTCATAATTAAGAGTATGAATATTAAATACATTCATAGGCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATGTTCATAATTAAGAGTATGAATATTAAATACATTCATAGGCT  150

seq1  TTCTCTACAGTATGAATTCTTTTATGCTTTTGAAGATGCCTGTGACATAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACAGTATGAATTCTTTTATGCTTTTGAAGATGCCTGTGACATAC  200

seq1  ATAGGCTCTCCCATATAGATCACATTTGTGGAAAGCCGTGAGCAATCGCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTCTCCCATATAGATCACATTTGTGGAAAGCCGTGAGCAATCGCC  250

seq1  ATTACAAGATGGCGCTGGCTTCCACAGTGCCTAACTGGTAAACAAGTAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGATGGCGCTGGCTTCCACAGTGCCTAACTGGTAAACAAGTAAT  300

seq1  GTGTGCAGGTGCTAGAGTAAATTTGTGCCAAGTCACTGCCCATCTCAGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGGTGCTAGAGTAAATTTGTGCCAAGTCACTGCCCATCTCAGGG  350

seq1  CGTAGCAGTGGGGTGATGAGTGAGCAGCAAACCAGGTGCTGACACATCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGCAGTGGGGTGATGAGTGAGCAGCAAACCAGGTGCTGACACATCAC  400

seq1  ACGGAGGGGTATATAAGCAGCTCAATTTTCCGGGTTCGGGGTCTTCCTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGGGTATATAAGCAGCTCAATTTTCCGGGTTCGGGGTCTTCCTTC  450

seq1  TGATGAAGCAATAAAGCTTTGCCGTAGAAGAATCCGGTTGTCCGAGTGAA  498
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  TGATGAAGCAATAATGCTTT-CCGTAGAAGAATCCGGTTGTCCGAGTGAA  499

seq1  TTC  501
      |||
seq2  TTC  502

seq1: chr18_25494273_25494773
seq2: B6Ng01-193M14.g_61_633 (reverse)

seq1  CCCCACCATGCCACAGGGGCATATGTTCCACTATGTTCATAGTTGCCATA  50
      |||||| |||||| |||||||  |||||||||||||||||||||||| ||
seq2  CCCCACTATGCCAAAGGGGCAGGTGTTCCACTATGTTCATAGTTGCCTTA  50

seq1  TTTGTGGTAGCCAGAAGCTGGAAAGAACATAGATGTCCCACGACAGAAGA  100
      |||||| ||||||||||||||||| ||| |||||||||||||||||||||
seq2  TTTGTGATAGCCAGAAGCTGGAAACAACCTAGATGTCCCACGACAGAAGA  100

seq1  ATGGATACAGAAAATGTGGTTCATTTA--CACAATGGAATACTACTCAGC  148
      |||||||||||||| ||||||||||||   ||||||||||||||||||||
seq2  ATGGATACAGAAAAGGTGGTTCATTTATGTACAATGGAATACTACTCAGC  150

seq1  TATTAAGAACAAGGACATCCTGACTTTAGCAGGCAAATGGATGGAACTAG  198
      |||||||||| |||||||||||| ||| ||||||||||||| ||| ||||
seq2  TATTAAGAACTAGGACATCCTGAGTTTTGCAGGCAAATGGACGGATCTAG  200

seq1  AAAATATC---CTGAATGAAAGAACTCAAATCCAAAAGGACATGCATGGT  245
      ||||||||   |||| |||   |||||| | |||||||||||||||||||
seq2  AAAATATCATTCTGAGTGAGGTAACTCACACCCAAAAGGACATGCATGGT  250

seq1  ATGTACTCAC-------------------------------TAATTAGTG  264
      ||||||||||                               |||| | ||
seq2  ATGTACTCACACCCAAAAGGACATGAATGGTATGTACTCATTAATAACTG  300

seq1  GATATTAGCCAAAAAGGGGGGGGGGGGAGAGAAAGAAAGAAAGA---AAG  311
      |||||||||       ||  || | |  |    ||     ||||     |
seq2  GATATTAGC-------GGCTGGCGTGATGGCTCAGTGGTTAAGAGCCCCG  343

seq1  AAAG-------AAAGAAAGAAAGAAAGAAAGAAAGAAAGAA---------  345
      |  |        |||     |||    ||    || ||  |         
seq2  ACTGCTCTTCCTAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGC  393

seq1  --AGAA--AGAAAGAAAGAAA---GA-GAGAGAAAGAAGCGAAAGAGAAA  387
        | ||  |     || ||||   || |       |  | | |   | | 
seq2  TCACAACCATCTGTAATGAAATCTGATGTCCTCTTGTGGAGTATCTG-AG  442

seq1  GAAAGAGAGAG-GGAGGGAAGGAGGAAGGAAGA------AAAAGAAAGAA  430
      || ||  | || | |   |   |  ||  || |      |||||||| ||
seq2  GATAGCTACAGTGTACTTACATATAAATAAATAAATCTTAAAAGAAAAAA  492

seq1  AA---------AGAAAAAGAAAAAGAAAAA-GAAAAGAAAAGAACCAATA  470
      ||         ||  ||| | ||||||||| ||||| ||||   || |||
seq2  AACTGGATATTAGCCAAAAAGAAAGAAAAAGGAAAAAAAAAATCCCTATA  542

seq1  TAGAATACCCACGATACAGTCCACAGAATTC  501
       ||||||| || || ||||||||||||||||
seq2  CAGAATACACAAGACACAGTCCACAGAATTC  573