BAC Information

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BAC

Clone NameB6Ng01-193P23
Chromosome13 (Build37)
Map Location 6,452,977 - 6,599,554
singlet/doubletdoublet
Overlap genePitrm1, Pfkp
Upstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
Downstream geneLOC100039532, LOC667611, EG623516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193P23.bB6Ng01-193P23.g
ACCGA016809GA016810
length1,017795
definitionB6Ng01-193P23.b B6Ng01-193P23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,598,554 - 6,599,554)(6,452,977 - 6,453,768)
sequence
gaattcctaatgtagcagggacagctgcctgccattgtcccaggaacctc
agctgtatttgagggagctgagaatgaacctcagtgctaggaaagcgagg
ggagagtagtgtggacatgtagctcagtggttagagtatttgcctagcag
ccctgaggcctcaggtttagtcccccacacttaaacagaagttcagtact
ttgtggccctttctccccattaattccccatttctatctgtttgaagagc
aaaacaatatgtgaaaagcttttgtctctctggccgtaagaatgaacgat
ggttacaaaggtttccatttccttggaaagacacggttaccacagcaact
tttataaaagtggacatttaattggggctggtttaccgtttcagaggttt
ggtgatttccaggatgcaagaatcaacaccagccactactgtaccttgca
tctgtcatatggaagggaagcaatttttagggttttgggctcttatgtca
ctgtggctaatgtctgagaagaatcaaatcaacttttctgcttgtttcag
tatcatggcttgtagtgccagatagacagatggggattccccagggtggc
ttccccaggcttctagattgcttctctgtgccatggtgttggtgctttgg
tggcaaagcctctgtagactggtgattatgtagacagacagactccctag
cctctgcagagagtcagcccagctgcaggcccatgtatgctttatggaag
gcaacctgggcattgctctgagcagtgtggaatgtgtgtgtattgcatat
attttctatatacttaatattgtattatttaatatatatatttacttaat
acacacattaaatatatttaaatacatttgtaaaaacatatacatacaca
catatatacatgtgcatatatccaaaaggcatgtaatttaggaaaaatgg
aaattttctaagagtaaattgattacacctgaggtaacctgtaagcctag
tacgtattttctctttt

gaattccaacaataattgtgtatttttaagagtctacagttcattagcct
aaatataattaaattgaaatgaatatataagaaaagagatataaagcata
aattttccattaagatgattttcggataataacaatagtaggacatggtg
atgaatgtttataacctatgcatttgggaagctgatgtaggagtacggct
ataaaatcaagaccaacctaaggtatagactgctttccagaacaatgtgg
cctatgcagcagactccacctcaaactacttttatttatttttaattttt
tattttatttttttaattaggtattttcttcatttacatttccaatgctt
cccaaaagtcccccataatctccctcccattcccctacccacccacaccc
acttcttggccctggcattcccctgtactgaggcatataatgtttgcaag
accaatgggcctctctttccattgatggccggactaggccatcttctggt
acgtatgcagctagagacacaagctctggggggtactagttagttcatat
tgttgttccacctatagggttgcagaaccctttagctccttgggtacttt
ctctagctcctccattggggggccctgtgatccatccaatagctgactgt
gagcatccacttatgtgtttgctaggccccagcatagcctcacaagagac
agctatatcagggtcctttcagcaaaatcttgctagtgtgtgcatgctgt
tagcatttggagggctgattatggggatggatccctggatatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6598554_6599554
seq2: B6Ng01-193P23.b_46_1062 (reverse)

seq1  -AAAAAGAAAATACGTATTA-GCTTACA-GTTA-CTCA-GTGTAATC-AT  44
       ||| |||||||||||| || ||||||| |||| |||| |||||||| ||
seq2  AAAAGAGAAAATACGTACTAGGCTTACAGGTTACCTCAGGTGTAATCAAT  50

seq1  TTACTCTTAG-AAATTTCCA-TTTTCCT-AATTACATGCC-TTTGGATAT  90
      |||||||||| ||||||||| ||||||| ||||||||||| |||||||||
seq2  TTACTCTTAGAAAATTTCCATTTTTCCTAAATTACATGCCTTTTGGATAT  100

seq1  ATGCACATGTATATATGTGTGTATGTATATG-TTTTAC-AATGTATTT-A  137
      ||||||||||||||||||||||||||||||| |||||| ||||||||| |
seq2  ATGCACATGTATATATGTGTGTATGTATATGTTTTTACAAATGTATTTAA  150

seq1  ATATATTT-ATGTGTGTA-TAAGT-AATATATATATTAAATAATACAATA  184
      |||||||| ||||||||| ||||| |||||||||||||||||||||||||
seq2  ATATATTTAATGTGTGTATTAAGTAAATATATATATTAAATAATACAATA  200

seq1  TTAAGTATATAGAAATTATATGCAATACACACACATTCCACACTGCTCAG  234
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTAAGTATATAGAAAATATATGCAATACACACACATTCCACACTGCTCAG  250

seq1  AGCAATGCCCAGGTTGCCTTCCATAAAGCATACATGGGCCTGCAGCTGGG  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGCCCAGGTTGCCTTCCATAAAGCATACATGGGCCTGCAGCTGGG  300

seq1  CTGACTCTCTGCAGAGGCTAGGGAGTCTGTCTGTCTACATAATCACCAGT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTCTGCAGAGGCTAGGGAGTCTGTCTGTCTACATAATCACCAGT  350

seq1  CTACAGAGGCTTTGCCACCAAAGCACCAACACCATGGCACAGAGAAGCAA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGGCTTTGCCACCAAAGCACCAACACCATGGCACAGAGAAGCAA  400

seq1  TCTAGAAGCCTGGGGAAGCCACCCTGGGGAATCCCCATCTGTCTATCTGG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGCCTGGGGAAGCCACCCTGGGGAATCCCCATCTGTCTATCTGG  450

seq1  CACTACAAGCCATGATACTGAAACAAGCAGAAAAGTTGATTTGATTCTTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAAGCCATGATACTGAAACAAGCAGAAAAGTTGATTTGATTCTTC  500

seq1  TCAGACATTAGCCACAGTGACATAAGAGCCCAAAACCCTAAAAATTGCTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATTAGCCACAGTGACATAAGAGCCCAAAACCCTAAAAATTGCTT  550

seq1  CCCTTCCATATGACAGATGCAAGGTACAGTAGTGGCTGGTGTTGATTCTT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCATATGACAGATGCAAGGTACAGTAGTGGCTGGTGTTGATTCTT  600

seq1  GCATCCTGGAAATCACCAAACCTCTGAAACGGTAAACCAGCCCCAATTAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGGAAATCACCAAACCTCTGAAACGGTAAACCAGCCCCAATTAA  650

seq1  ATGTCCACTTTTATAAAAGTTGCTGTGGTAACCGTGTCTTTCCAAGGAAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCACTTTTATAAAAGTTGCTGTGGTAACCGTGTCTTTCCAAGGAAA  700

seq1  TGGAAACCTTTGTAACCATCGTTCATTCTTACGGCCAGAGAGACAAAAGC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCTTTGTAACCATCGTTCATTCTTACGGCCAGAGAGACAAAAGC  750

seq1  TTTTCACATATTGTTTTGCTCTTCAAACAGATAGAAATGGGGAATTAATG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATATTGTTTTGCTCTTCAAACAGATAGAAATGGGGAATTAATG  800

seq1  GGGAGAAAGGGCCACAAAGTACTGAACTTCTGTTTAAGTGTGGGGGACTA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAGGGCCACAAAGTACTGAACTTCTGTTTAAGTGTGGGGGACTA  850

seq1  AACCTGAGGCCTCAGGGCTGCTAGGCAAATACTCTAACCACTGAGCTACA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGGCCTCAGGGCTGCTAGGCAAATACTCTAACCACTGAGCTACA  900

seq1  TGTCCACACTACTCTCCCCTCGCTTTCCTAGCACTGAGGTTCATTCTCAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACACTACTCTCCCCTCGCTTTCCTAGCACTGAGGTTCATTCTCAG  950

seq1  CTCCCTCAAATACAGCTGAGGTTCCTGGGACAATGGCAGGCAGCTGTCCC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCAAATACAGCTGAGGTTCCTGGGACAATGGCAGGCAGCTGTCCC  1000

seq1  TGCTACATTAGGAATTC  1001
      |||||||||||||||||
seq2  TGCTACATTAGGAATTC  1017


seq1: chr13_6452977_6453768
seq2: B6Ng01-193P23.g_64_858

seq1  GAATTCCAACAATAATTGTGTATTTTTAAGAGTCTACAGTTCATTAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAATAATTGTGTATTTTTAAGAGTCTACAGTTCATTAGCCT  50

seq1  AAATATAATTAAATTGAAATGAATATATAAGAAAAGAGATATAAAGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAATTAAATTGAAATGAATATATAAGAAAAGAGATATAAAGCATA  100

seq1  AATTTTCCATTAAGATGATTTTCGGATAATAACAATAGTAGGACATGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCATTAAGATGATTTTCGGATAATAACAATAGTAGGACATGGTG  150

seq1  ATGAATGTTTATAACCTATGCATTTGGGAAGCTGATGTAGGAGTACGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTTTATAACCTATGCATTTGGGAAGCTGATGTAGGAGTACGGCT  200

seq1  ATAAAATCAAGACCAACCTAAGGTATAGACTGCTTTCCAGAACAATGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCAAGACCAACCTAAGGTATAGACTGCTTTCCAGAACAATGTGG  250

seq1  CCTATGCAGCAGACTCCACCTCAAACTACTTTTATTTATTTTTAATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCAGCAGACTCCACCTCAAACTACTTTTATTTATTTTTAATTTTT  300

seq1  TATTTTATTTTTTTAATTAGGTATTTTCTTCATTTACATTTCCAATGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTTTTAATTAGGTATTTTCTTCATTTACATTTCCAATGCTT  350

seq1  CCCAAAAGTCCCCCATAATCTCCCTCCCATTCCCCTACCCACCCACACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAGTCCCCCATAATCTCCCTCCCATTCCCCTACCCACCCACACCC  400

seq1  ACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAATGTTTGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAATGTTTGCAAG  450

seq1  ACCAATGGGCCTCTCTTTCCATTGATGGCCGGACTAGGCCATCTTCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGGGCCTCTCTTTCCATTGATGGCCGGACTAGGCCATCTTCTGGT  500

seq1  ACGTATGCAGCTAGAGACACAAGCTCTGGGGGGTACTAGTTAGTTCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATGCAGCTAGAGACACAAGCTCTGGGGGGTACTAGTTAGTTCATAT  550

seq1  TGTTGTTCCACCTATAGGGTTGCAGAACCCTTTAGCTCCTTGGGTACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCCACCTATAGGGTTGCAGAACCCTTTAGCTCCTTGGGTACTTT  600

seq1  CTCTAGCTCCTCCATT-GGGGGCCCTGTGATCCATCCAATAGCTGACTGT  649
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCTAGCTCCTCCATTGGGGGGCCCTGTGATCCATCCAATAGCTGACTGT  650

seq1  GAGCATCCACTTATGTGTTTGCTAGGCCCCAGCATAGCCTCACAAGAGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCCACTTATGTGTTTGCTAGGCCCCAGCATAGCCTCACAAGAGAC  700

seq1  AGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTAGTGTGTGCATGCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTAGTGTGTGCATGCTGT  750

seq1  CAGCATTTGGA-GGCTGATTAT-GGGATGGATCCCTGGATATGGC  792
       |||||||||| |||||||||| ||||||||||||||||||||||
seq2  TAGCATTTGGAGGGCTGATTATGGGGATGGATCCCTGGATATGGC  795


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